BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00008981
         (1372 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002532079.1| exosome complex exonuclease rrp43, putative ...   442   e-122
ref|XP_002284088.1| PREDICTED: exosome complex component RRP43-l...   441   e-121
emb|CBI29839.3| unnamed protein product [Vitis vinifera]              432   e-118
ref|XP_002308947.1| predicted protein [Populus trichocarpa] gi|2...   429   e-118
ref|XP_004149399.1| PREDICTED: exosome complex component RRP43-l...   428   e-117

>ref|XP_002532079.1| exosome complex exonuclease rrp43, putative [Ricinus communis]
            gi|223528261|gb|EEF30313.1| exosome complex exonuclease
            rrp43, putative [Ricinus communis]
          Length = 303

 Score =  442 bits (1138), Expect = e-122
 Identities = 220/303 (72%), Positives = 253/303 (83%)
 Frame = +1

Query: 247  MGLEDVSGDLAGEMEVDAFRRLFPLRFYERHLLESIRPDARPLGRARDTTVALGAVASAD 426
            MGL +VSGDL+ EME DAFRRLFPL F+ERHL ESIRPD R LGRARDTT+ALGAV SAD
Sbjct: 1    MGLPNVSGDLSTEMEADAFRRLFPLLFHERHLAESIRPDGRSLGRARDTTLALGAVVSAD 60

Query: 427  GSALAKIGHTTMLAAIKMEVLTPSSGSPDEGCIAVDFHMPPICSPLVRPGRPAEAAPVIS 606
            GSA+AKIG TTM+AAIKMEV+TPSS SPDEGCIA+DFHMPPICSPLVRPGRPAEAAPV+S
Sbjct: 61   GSAIAKIGSTTMMAAIKMEVMTPSSESPDEGCIAIDFHMPPICSPLVRPGRPAEAAPVVS 120

Query: 607  KQLNEVIVSSGMVNLKELSLIPGKAAWMVYLDIYCXXXXXXXXXXXXXSAVSAFSHLNIP 786
            KQL++ I+SS M++LKELSL+ GKAAWM YLDIYC             SAV+AF++L IP
Sbjct: 121  KQLSDTIMSSAMIDLKELSLVSGKAAWMAYLDIYCLDADGSLFDAALFSAVAAFTNLQIP 180

Query: 787  AVSVNDDGRVVAVLGEQVEGNQVQETLNKTRRKLTLSCTPFSLTCILHKKYILADPTAEE 966
             VS+NDDG+VV V  E   G + +E +NK +RKLTL   PFSLTC+LHK YILADPTAEE
Sbjct: 181  IVSLNDDGKVVVVSDENEGGKREKEAVNKEKRKLTLRSLPFSLTCVLHKNYILADPTAEE 240

Query: 967  ESVMETLVTVVLDLSGRLVSFYKPGGPALVYTSTVQDCIALTRQRVKELQTVLNEAIADM 1146
            ES+METLVTVVLD S RLVSFYKPGGP L YTS VQDC+ALTRQRVKELQ +L+EA++ M
Sbjct: 241  ESIMETLVTVVLDSSARLVSFYKPGGPVLAYTSAVQDCVALTRQRVKELQNILDEALSGM 300

Query: 1147 ELD 1155
            ++D
Sbjct: 301  QID 303


>ref|XP_002284088.1| PREDICTED: exosome complex component RRP43-like [Vitis vinifera]
          Length = 303

 Score =  441 bits (1134), Expect = e-121
 Identities = 221/299 (73%), Positives = 254/299 (84%)
 Frame = +1

Query: 259  DVSGDLAGEMEVDAFRRLFPLRFYERHLLESIRPDARPLGRARDTTVALGAVASADGSAL 438
            +VSGDL+ EMEVDAFRRLFPLR++ER LL+SIRPDARPLGRARDT++ALGAVASADGSAL
Sbjct: 5    NVSGDLSSEMEVDAFRRLFPLRYHERFLLDSIRPDARPLGRARDTSLALGAVASADGSAL 64

Query: 439  AKIGHTTMLAAIKMEVLTPSSGSPDEGCIAVDFHMPPICSPLVRPGRPAEAAPVISKQLN 618
            AKIG TTMLAA+KMEV+TP   SPDEG IA++F+MPPICSPLVRPGRPAE APV+SKQL+
Sbjct: 65   AKIGCTTMLAAVKMEVMTPPKESPDEGSIAIEFYMPPICSPLVRPGRPAEEAPVVSKQLS 124

Query: 619  EVIVSSGMVNLKELSLIPGKAAWMVYLDIYCXXXXXXXXXXXXXSAVSAFSHLNIPAVSV 798
            + I+SSGM+NLKELSL+ GKAAWM YLDIYC             +AV+AFSHL IP VS+
Sbjct: 125  DTILSSGMINLKELSLVSGKAAWMAYLDIYCLDADGSLFDAALLAAVAAFSHLRIPVVSL 184

Query: 799  NDDGRVVAVLGEQVEGNQVQETLNKTRRKLTLSCTPFSLTCILHKKYILADPTAEEESVM 978
            N++GRVV V  E  EG   +E +NK +RKLTLS  PFSLTCILHK YILADPTAEEES+M
Sbjct: 185  NEEGRVVVVSEENEEGKSEKEPVNKGKRKLTLSSLPFSLTCILHKNYILADPTAEEESIM 244

Query: 979  ETLVTVVLDLSGRLVSFYKPGGPALVYTSTVQDCIALTRQRVKELQTVLNEAIADMELD 1155
            ETLVTVVLD SG+LVS YKPGGP L Y S VQDCIALTRQRVKEL+++LNEAI+DME+D
Sbjct: 245  ETLVTVVLDSSGQLVSLYKPGGPVLAYASAVQDCIALTRQRVKELKSILNEAISDMEVD 303


>emb|CBI29839.3| unnamed protein product [Vitis vinifera]
          Length = 311

 Score =  432 bits (1110), Expect = e-118
 Identities = 220/307 (71%), Positives = 253/307 (82%), Gaps = 8/307 (2%)
 Frame = +1

Query: 259  DVSGDLAGEMEVDAFRRLFPLRFYERHLLESIRPDARPLGRARDTTVALGAVASADGSAL 438
            +VSGDL+ EMEVDAFRRLFPLR++ER LL+SIRPDARPLGRARDT++ALGAVASADGSAL
Sbjct: 5    NVSGDLSSEMEVDAFRRLFPLRYHERFLLDSIRPDARPLGRARDTSLALGAVASADGSAL 64

Query: 439  AKIGHTTMLAAIKMEVLTPSSGSPDEGCIAVDFHMPPICSPLVRPGRPAEAAPVISKQLN 618
            AKIG TTMLAA+KMEV+TP   SPDEG IA++F+MPPICSPLVRPGRPAE APV+SKQL+
Sbjct: 65   AKIGCTTMLAAVKMEVMTPPKESPDEGSIAIEFYMPPICSPLVRPGRPAEEAPVVSKQLS 124

Query: 619  EVIVS--------SGMVNLKELSLIPGKAAWMVYLDIYCXXXXXXXXXXXXXSAVSAFSH 774
            + I+         SGM+NLKELSL+ GKAAWM YLDIYC             +AV+AFSH
Sbjct: 125  DTILRHVNVVTSFSGMINLKELSLVSGKAAWMAYLDIYCLDADGSLFDAALLAAVAAFSH 184

Query: 775  LNIPAVSVNDDGRVVAVLGEQVEGNQVQETLNKTRRKLTLSCTPFSLTCILHKKYILADP 954
            L IP VS+N++GRVV V  E  EG   +E +NK +RKLTLS  PFSLTCILHK YILADP
Sbjct: 185  LRIPVVSLNEEGRVVVVSEENEEGKSEKEPVNKGKRKLTLSSLPFSLTCILHKNYILADP 244

Query: 955  TAEEESVMETLVTVVLDLSGRLVSFYKPGGPALVYTSTVQDCIALTRQRVKELQTVLNEA 1134
            TAEEES+METLVTVVLD SG+LVS YKPGGP L Y S VQDCIALTRQRVKEL+++LNEA
Sbjct: 245  TAEEESIMETLVTVVLDSSGQLVSLYKPGGPVLAYASAVQDCIALTRQRVKELKSILNEA 304

Query: 1135 IADMELD 1155
            I+DME+D
Sbjct: 305  ISDMEVD 311


>ref|XP_002308947.1| predicted protein [Populus trichocarpa] gi|222854923|gb|EEE92470.1|
            predicted protein [Populus trichocarpa]
          Length = 318

 Score =  429 bits (1104), Expect = e-118
 Identities = 224/318 (70%), Positives = 252/318 (79%), Gaps = 15/318 (4%)
 Frame = +1

Query: 247  MGLEDVSGDLAGEMEVDAFRRLFPLRFYERHLLESIRPDARPLGRARDTTVALGAVASAD 426
            MG+ D SGDL+ EMEVDAFRRLFPLR++ERHL ESIRPDARPLGRARDTT+ALGAVASA 
Sbjct: 1    MGVPDASGDLSSEMEVDAFRRLFPLRYFERHLSESIRPDARPLGRARDTTLALGAVASAH 60

Query: 427  GSALAKIGHTTMLAAIKMEVLTPSSGSPDEGCIAVDFHMPPICSPLVRPGRPAEAAPVIS 606
            GSALAKIG TTMLAAIKMEV+TPS+ SP+EG IA+DFHMPPICSP+VRPGRPAEAAPVIS
Sbjct: 61   GSALAKIGSTTMLAAIKMEVMTPSTESPEEGSIAIDFHMPPICSPIVRPGRPAEAAPVIS 120

Query: 607  KQLNEVI---VSSGMVNLKELSLIPGKAAWMVYLDIYCXXXXXXXXXXXXXSAVSAFSH- 774
            KQL++ I   V+SGM+NLKELSL+ GKAAWM YLDIYC             SAV AFSH 
Sbjct: 121  KQLSDTISRQVNSGMINLKELSLVSGKAAWMAYLDIYCLDADGALFDAALLSAVGAFSHS 180

Query: 775  -----------LNIPAVSVNDDGRVVAVLGEQVEGNQVQETLNKTRRKLTLSCTPFSLTC 921
                       + IP VS+NDDG++V V  E       +E +NK +RKLTLS  PFSLTC
Sbjct: 181  AFIYYRSLICAVQIPIVSLNDDGKIVLVSEEDDGTKLEEEPVNKEKRKLTLSSIPFSLTC 240

Query: 922  ILHKKYILADPTAEEESVMETLVTVVLDLSGRLVSFYKPGGPALVYTSTVQDCIALTRQR 1101
            ILHK YILADPTAEEES+METLVTVVLD S RLVSFYKPGGP L  TS VQDC+ALTRQR
Sbjct: 241  ILHKNYILADPTAEEESIMETLVTVVLDSSSRLVSFYKPGGPVLAQTSAVQDCVALTRQR 300

Query: 1102 VKELQTVLNEAIADMELD 1155
            VKELQ +L+E I+ ME+D
Sbjct: 301  VKELQDILDETISGMEID 318


>ref|XP_004149399.1| PREDICTED: exosome complex component RRP43-like [Cucumis sativus]
            gi|449503802|ref|XP_004162184.1| PREDICTED: exosome
            complex component RRP43-like [Cucumis sativus]
          Length = 304

 Score =  428 bits (1101), Expect = e-117
 Identities = 217/304 (71%), Positives = 251/304 (82%), Gaps = 1/304 (0%)
 Frame = +1

Query: 247  MGLEDV-SGDLAGEMEVDAFRRLFPLRFYERHLLESIRPDARPLGRARDTTVALGAVASA 423
            MGL +  SGDL+ +MEVDAFRRLFP++FYERHL ESIRPD R LG+ARDTT+ALG V+SA
Sbjct: 1    MGLPNAASGDLSSQMEVDAFRRLFPIQFYERHLTESIRPDGRSLGKARDTTIALGPVSSA 60

Query: 424  DGSALAKIGHTTMLAAIKMEVLTPSSGSPDEGCIAVDFHMPPICSPLVRPGRPAEAAPVI 603
            +GSALAKIG TTMLAAIKMEV+TPS  SPDEGCIA+DFHMPP+CSP+VRPGRPAEAAPVI
Sbjct: 61   NGSALAKIGSTTMLAAIKMEVMTPSVESPDEGCIALDFHMPPVCSPIVRPGRPAEAAPVI 120

Query: 604  SKQLNEVIVSSGMVNLKELSLIPGKAAWMVYLDIYCXXXXXXXXXXXXXSAVSAFSHLNI 783
            SKQL++ I SSGM++L+ELSL+ GKAAWM YLDIYC             SA +AFSHL I
Sbjct: 121  SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI 180

Query: 784  PAVSVNDDGRVVAVLGEQVEGNQVQETLNKTRRKLTLSCTPFSLTCILHKKYILADPTAE 963
            P V++NDDG+VV V  E+   N  +E +NK  RKL L+  PFSLTC+LHKKYILADPTAE
Sbjct: 181  PVVALNDDGKVVFVCEEEGGENFEKEPVNKENRKLKLNSIPFSLTCLLHKKYILADPTAE 240

Query: 964  EESVMETLVTVVLDLSGRLVSFYKPGGPALVYTSTVQDCIALTRQRVKELQTVLNEAIAD 1143
            EESVMET+VTVVLD SG+LVSFYKPGG  L YTS VQDCIALTRQR KELQ +L+EAI+ 
Sbjct: 241  EESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCIALTRQRSKELQIILDEAISG 300

Query: 1144 MELD 1155
            ME+D
Sbjct: 301  MEID 304