BLASTX nr result

ID: Cimicifuga21_contig00008972 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00008972
         (868 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002269190.1| PREDICTED: putative expansin-B2 [Vitis vinif...   393   e-107
gb|ABC47128.1| beta expansin 2 precursor [Solanum tuberosum]          365   6e-99
ref|NP_001233766.1| beta expansin precursor [Solanum lycopersicu...   357   2e-96
ref|NP_001234859.1| beta-expansin precursor [Solanum lycopersicu...   333   2e-89
gb|ABC47127.1| beta expansin 1 precursor [Solanum tuberosum]          328   1e-87

>ref|XP_002269190.1| PREDICTED: putative expansin-B2 [Vitis vinifera]
           gi|297743578|emb|CBI36445.3| unnamed protein product
           [Vitis vinifera]
          Length = 279

 Score =  393 bits (1010), Expect = e-107
 Identities = 187/255 (73%), Positives = 208/255 (81%), Gaps = 2/255 (0%)
 Frame = -1

Query: 763 CFPQYCFCINPKRFNLSTSATHWGPAGATWYGSPEXXXXXXXXXXXGNTVSQPPFSSLIA 584
           CF + C    PK FNLS + THW  AGATWYGSPE           GN VSQPPFSS+I 
Sbjct: 26  CF-ETCHSFKPKYFNLSRAGTHWASAGATWYGSPEGAGSDGGSCGYGNAVSQPPFSSMIT 84

Query: 583 GVGPSLYKSGKQCGVCYQVKCTE--HPSCSGKPVRVVITDFCPGGPCVEGSAHFDLSGTS 410
           G+GPSLYKSGK+CG CYQVKCT+  HPSCSG+PVRVVITDFCPGGPC   SAHFDLSGT+
Sbjct: 85  GIGPSLYKSGKECGACYQVKCTKRMHPSCSGRPVRVVITDFCPGGPCASQSAHFDLSGTA 144

Query: 409 FGAMAKPGQEEQLRNAGVLNIRYARVACDYSGKTLTFHVDPGSNSNYFSVVIEFEEGDGD 230
           FGAMA PGQEE+LRN GVL IRYARVACDYSGKT+ FHVD G+N N FSV++EFEEGDGD
Sbjct: 145 FGAMAIPGQEEKLRNVGVLEIRYARVACDYSGKTIAFHVDLGANPNSFSVLVEFEEGDGD 204

Query: 229 LAGVALSEASNESNEWRAMQQSWGAVWKLDAGSQLQAPFSIRLQSQYSGETIVAKNVIPE 50
           LAGVAL E    S +WRAMQQSWGAVWKLDAG +L+ PFSI+L SQYSG+T+VAKNVIP+
Sbjct: 205 LAGVALKETLKGSGKWRAMQQSWGAVWKLDAGYELKPPFSIQLTSQYSGQTLVAKNVIPD 264

Query: 49  GWKPGGTYRSLVNFL 5
           GWKPG TYRSLVN+L
Sbjct: 265 GWKPGSTYRSLVNYL 279


>gb|ABC47128.1| beta expansin 2 precursor [Solanum tuberosum]
          Length = 279

 Score =  365 bits (938), Expect = 6e-99
 Identities = 178/257 (69%), Positives = 201/257 (78%), Gaps = 5/257 (1%)
 Frame = -1

Query: 763 CFPQYCFCINPKRFNLSTSATHWGPAGATWYGSPEXXXXXXXXXXXGNTVSQPPFSSLIA 584
           CF    F   PK FNLST ATHWG AGATWYGSP            G+ VSQ PFSS + 
Sbjct: 21  CFICPSFGYKPKHFNLSTHATHWGTAGATWYGSPHGAGSDGGSCGYGSAVSQAPFSSFVT 80

Query: 583 GVGPSLYKSGKQCGVCYQVKCTE--HPSCSGKPVRVVITDFCPGGPCVEGSAHFDLSGTS 410
           G+GPSLYKSGK+CG CYQVKCT+  H SCSGK VRVVITDFCPGGPCV  SAHFDLSGT+
Sbjct: 81  GIGPSLYKSGKECGACYQVKCTKKMHGSCSGKGVRVVITDFCPGGPCVAQSAHFDLSGTA 140

Query: 409 FGAMAKPGQEEQLRNAGVLNIRYARVACDYSGKTLTFHVDPGSNSNYFSVVIEFEEGDGD 230
           FG+MA PGQE++LR+AGVL IRYARVACDYS K + FHVD GSNS YF+VVIEFEEGDGD
Sbjct: 141 FGSMAIPGQEQKLRDAGVLQIRYARVACDYSRKNIVFHVDQGSNSEYFAVVIEFEEGDGD 200

Query: 229 LAGVALSE---ASNESNEWRAMQQSWGAVWKLDAGSQLQAPFSIRLQSQYSGETIVAKNV 59
           LA V L E   +  ++++WR MQQSWGAVWKLDAGS+L  PFSIRL SQYS + ++AKNV
Sbjct: 201 LAKVELKEKISSITKNSKWRQMQQSWGAVWKLDAGSELHPPFSIRLTSQYSDQILIAKNV 260

Query: 58  IPEGWKPGGTYRSLVNF 8
           IP GW+PG TYRSLVN+
Sbjct: 261 IPTGWQPGATYRSLVNY 277


>ref|NP_001233766.1| beta expansin precursor [Solanum lycopersicum]
           gi|81367673|gb|ABB71677.1| beta expansin precursor
           [Solanum lycopersicum]
          Length = 285

 Score =  357 bits (917), Expect = 2e-96
 Identities = 177/263 (67%), Positives = 199/263 (75%), Gaps = 11/263 (4%)
 Frame = -1

Query: 763 CFPQYCFCINPKRFNLSTSATHWGPAGATWYGSPEXXXXXXXXXXXGNTVSQPPFSSLIA 584
           CF    F   PK FNLST ATHWG AGATWYGSP            G+ VS+ P SS + 
Sbjct: 21  CFICPSFGYKPKHFNLSTHATHWGTAGATWYGSPHGAGSDGGSCGYGSAVSEAPLSSFVT 80

Query: 583 GVGPSLYKSGKQCGVCYQVKCTE--HPSCSGKPVRVVITDFCPGGPCVEGSAHFDLSGTS 410
           G+GPSLYKSGK+CG CYQVKCT+  H SCSGK VRVVITDFCPGGPCV  SAHFDLSGT+
Sbjct: 81  GIGPSLYKSGKECGACYQVKCTKKMHRSCSGKGVRVVITDFCPGGPCVAQSAHFDLSGTA 140

Query: 409 FGAMAKPGQEEQLRNAGVLNIRYARVACDYSGKTLTFHVDPGSNSNYFSVVIEFEEGDGD 230
           FGAMA PGQE++LR+AGVL IRYARVACDYS K + FHVD GSNS YF+VVIEFE+GDGD
Sbjct: 141 FGAMAIPGQEQKLRDAGVLQIRYARVACDYSRKNIVFHVDQGSNSEYFAVVIEFEQGDGD 200

Query: 229 LAGVALSE--------ASNESN-EWRAMQQSWGAVWKLDAGSQLQAPFSIRLQSQYSGET 77
           LA V L E          N++N +WR MQQSWGAVWKLDAGS+L  PFSIRL SQYS + 
Sbjct: 201 LAKVELKEKRSSSIISRGNKNNYKWRQMQQSWGAVWKLDAGSKLHPPFSIRLTSQYSDQI 260

Query: 76  IVAKNVIPEGWKPGGTYRSLVNF 8
           ++A NVIP GW+PG TYRSLVN+
Sbjct: 261 LIANNVIPTGWQPGATYRSLVNY 283


>ref|NP_001234859.1| beta-expansin precursor [Solanum lycopersicum]
           gi|82569705|gb|ABB83474.1| beta-expansin precursor
           [Solanum lycopersicum]
          Length = 275

 Score =  333 bits (855), Expect = 2e-89
 Identities = 160/249 (64%), Positives = 188/249 (75%), Gaps = 2/249 (0%)
 Frame = -1

Query: 748 CFCINPKRFNLST--SATHWGPAGATWYGSPEXXXXXXXXXXXGNTVSQPPFSSLIAGVG 575
           C C++PKRFN+S   S + W P GATWYGSP             N V QPPFSSLIA  G
Sbjct: 27  CSCLHPKRFNVSKVQSNSDWSPPGATWYGSPSGAGSDGGACGYTNAVDQPPFSSLIAAAG 86

Query: 574 PSLYKSGKQCGVCYQVKCTEHPSCSGKPVRVVITDFCPGGPCVEGSAHFDLSGTSFGAMA 395
           PSL+KSGK CG CYQVKCT + +CSGKPVRVVITD CPGGPC+  SAHFDLSGTSFGAMA
Sbjct: 87  PSLFKSGKGCGACYQVKCTGNKACSGKPVRVVITDSCPGGPCLSESAHFDLSGTSFGAMA 146

Query: 394 KPGQEEQLRNAGVLNIRYARVACDYSGKTLTFHVDPGSNSNYFSVVIEFEEGDGDLAGVA 215
             GQ +QLRNAGV+ I+Y RV C+Y G  LTFHVD GSNSNYF+ ++E+E+GDGDL  V 
Sbjct: 147 ISGQADQLRNAGVIQIQYKRVECNYPGVKLTFHVDSGSNSNYFAALVEYEDGDGDLNSVD 206

Query: 214 LSEASNESNEWRAMQQSWGAVWKLDAGSQLQAPFSIRLQSQYSGETIVAKNVIPEGWKPG 35
           L +A  +S  W+ MQQSWGAVWKLD+GS L APFS++L  + SG+T+VA  VIP GW+PG
Sbjct: 207 LKQAL-DSESWQPMQQSWGAVWKLDSGSSLVAPFSLKLTGE-SGQTVVANGVIPAGWQPG 264

Query: 34  GTYRSLVNF 8
            TYRS+VNF
Sbjct: 265 KTYRSVVNF 273


>gb|ABC47127.1| beta expansin 1 precursor [Solanum tuberosum]
          Length = 276

 Score =  328 bits (841), Expect = 1e-87
 Identities = 158/250 (63%), Positives = 186/250 (74%), Gaps = 3/250 (1%)
 Frame = -1

Query: 748 CFCINPKRFNLST---SATHWGPAGATWYGSPEXXXXXXXXXXXGNTVSQPPFSSLIAGV 578
           C C +PKR N  +   S + W PAGATWYGSP             N V QPPFSSLIA  
Sbjct: 27  CSCFHPKRLNNVSKIQSNSDWSPAGATWYGSPSGAGSDGGACGYTNAVDQPPFSSLIAAA 86

Query: 577 GPSLYKSGKQCGVCYQVKCTEHPSCSGKPVRVVITDFCPGGPCVEGSAHFDLSGTSFGAM 398
           GPSL+KSGK CG CYQVKCT + +CSGKPVRVVITD CPGGPC+  SAHFDLSGTSFGAM
Sbjct: 87  GPSLFKSGKGCGACYQVKCTGNKACSGKPVRVVITDSCPGGPCLSESAHFDLSGTSFGAM 146

Query: 397 AKPGQEEQLRNAGVLNIRYARVACDYSGKTLTFHVDPGSNSNYFSVVIEFEEGDGDLAGV 218
           A  GQ +QLRNAGVL ++Y RV C+Y G  LTFHVD GSNSNYF+ ++E+E+GDGDL  V
Sbjct: 147 AISGQADQLRNAGVLQVQYKRVECNYPGVKLTFHVDSGSNSNYFAALVEYEDGDGDLNRV 206

Query: 217 ALSEASNESNEWRAMQQSWGAVWKLDAGSQLQAPFSIRLQSQYSGETIVAKNVIPEGWKP 38
            L +A  +S  W+ MQQSWGAVWKLD+GS L APFS++L  + SG+T+VA  VIP GW+P
Sbjct: 207 DLKQAL-DSESWQPMQQSWGAVWKLDSGSSLVAPFSLKLTGE-SGQTVVANGVIPAGWQP 264

Query: 37  GGTYRSLVNF 8
           G TYRS++NF
Sbjct: 265 GKTYRSVINF 274


Top