BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00008866
         (867 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002276497.1| PREDICTED: THO complex subunit 4 [Vitis vini...   222   7e-56
ref|XP_002531919.1| RNA and export factor binding protein, putat...   213   5e-53
ref|XP_004145851.1| PREDICTED: THO complex subunit 4-like [Cucum...   209   9e-52
ref|XP_003553032.1| PREDICTED: THO complex subunit 4-like [Glyci...   207   3e-51
gb|ADE77937.1| unknown [Picea sitchensis]                             205   1e-50

>ref|XP_002276497.1| PREDICTED: THO complex subunit 4 [Vitis vinifera]
           gi|296087136|emb|CBI33510.3| unnamed protein product
           [Vitis vinifera]
          Length = 269

 Score =  222 bits (566), Expect = 7e-56
 Identities = 116/202 (57%), Positives = 139/202 (68%), Gaps = 1/202 (0%)
 Frame = +3

Query: 9   SRTKNVTWQRSMLEDSLVAAGYSGIENGSKLYVSNLDYGVTNEDIKELFSEIGQLKRYTL 188
           SR   + WQ  + EDSL AAG  G+E G+KLY+SNLDYGVTNEDI+ELFSEIG +KRY +
Sbjct: 68  SRRTKIPWQHDLFEDSLRAAGLPGLEAGTKLYISNLDYGVTNEDIRELFSEIGDIKRYAV 127

Query: 189 HYDKNGRPSGSAEVIFARSADALAAMKRYNNVQLDGKFMKIEIIGTSVAMPLSARVNVTG 368
           HY+KNGRPSGSAEV++ R +DA AA+KRYNNV LDGK MKIEIIG+   MP+SARVNV G
Sbjct: 128 HYEKNGRPSGSAEVVYTRRSDAFAAVKRYNNVLLDGKPMKIEIIGSDSDMPVSARVNVIG 187

Query: 369 GANGRGRRTVVMTPGSGRPRASAPPN-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEP 545
           G NG+ RRTVVMTPG G  R S   N                               K+P
Sbjct: 188 GVNGKRRRTVVMTPGVGHARGSTAINRSSSRRGRGGLSNGRGRGRAGSRGRGRGRGRKQP 247

Query: 546 MEKSAEELNQELEHYHAEAMNT 611
           +EKSA EL++EL++YHAEAM+T
Sbjct: 248 VEKSAVELDKELDNYHAEAMHT 269


>ref|XP_002531919.1| RNA and export factor binding protein, putative [Ricinus communis]
           gi|223528429|gb|EEF30463.1| RNA and export factor
           binding protein, putative [Ricinus communis]
          Length = 268

 Score =  213 bits (542), Expect = 5e-53
 Identities = 111/202 (54%), Positives = 141/202 (69%), Gaps = 2/202 (0%)
 Frame = +3

Query: 12  RTKNVTWQRSMLEDSLVAAGYSGIENGSKLYVSNLDYGVTNEDIKELFSEIGQLKRYTLH 191
           R +N+ WQ  +LEDS+ AAG +G+E G+KLYVSNL+YGV+NEDI+ELF+EIG LKRY +H
Sbjct: 68  RIRNLPWQHDLLEDSIRAAGITGVEVGTKLYVSNLEYGVSNEDIRELFAEIGDLKRYAVH 127

Query: 192 YDKNGRPSGSAEVIFARSADALAAMKRYNNVQLDGKFMKIEIIGTSVAMPLSARVNVTGG 371
           YDKNGR +GSAEV++ R ++A AA+K+YNNV LDGK MKIEI+G +   P+SARVNVTG 
Sbjct: 128 YDKNGRSTGSAEVVYTRRSEAFAALKKYNNVLLDGKPMKIEIVGVTGEAPISARVNVTG- 186

Query: 372 ANGRGRRTVVMTPGSGRPRASAPPNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--KEP 545
            NGR +RTVVMTPG GR R  AP N                                K+P
Sbjct: 187 INGRRKRTVVMTPGPGRGRGFAPSNRGAGQRSRGGLRNLGRGRGRGRGRGGHGGRGKKQP 246

Query: 546 MEKSAEELNQELEHYHAEAMNT 611
           +EKSA+EL++EL+ YHAEAM +
Sbjct: 247 LEKSADELDKELDTYHAEAMQS 268


>ref|XP_004145851.1| PREDICTED: THO complex subunit 4-like [Cucumis sativus]
          Length = 286

 Score =  209 bits (531), Expect = 9e-52
 Identities = 115/218 (52%), Positives = 139/218 (63%), Gaps = 18/218 (8%)
 Frame = +3

Query: 12  RTKNVTWQRSMLEDSLVAAGYSGIENGSKLYVSNLDYGVTNEDIKELFSEIGQLKRYTLH 191
           R KNV WQ  + EDSL A+G SGI+ G+KLYVSNLDYGVT EDIKELFSEIG +KR+ +H
Sbjct: 70  RMKNVQWQHDLFEDSLRASGISGIQIGTKLYVSNLDYGVTKEDIKELFSEIGDVKRFAIH 129

Query: 192 YDKNGRPSGSAEVIFARSADALAAMKRYNNVQLDGKFMKIEIIGTSVAMPLSARVNVTGG 371
           YDKNGRPSGSAEV++ R +DA AA+KRYNNV LDGK MKIE++G +  MP+SAR+NVT G
Sbjct: 130 YDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPVSARINVT-G 188

Query: 372 ANGRGRRTVVMTPGSGRPRASAPPN------------------XXXXXXXXXXXXXXXXX 497
            NGR RRTVV+T  SGR   S   N                                   
Sbjct: 189 TNGRNRRTVVLTSESGRNATSNVVNSFPGPSHRGGLRNARGRGRGAWSRGVGLGGGSGGG 248

Query: 498 XXXXXXXXXXXXXKEPMEKSAEELNQELEHYHAEAMNT 611
                        K+P+EKS++EL++ELE+YHAEAM T
Sbjct: 249 RGRGRGRGRGQGRKKPVEKSSDELDKELENYHAEAMQT 286


>ref|XP_003553032.1| PREDICTED: THO complex subunit 4-like [Glycine max]
          Length = 298

 Score =  207 bits (526), Expect = 3e-51
 Identities = 114/215 (53%), Positives = 140/215 (65%), Gaps = 14/215 (6%)
 Frame = +3

Query: 12  RTKNVTWQRSMLEDSLVAAGYSGIENGSKLYVSNLDYGVTNEDIKELFSEIGQLKRYTLH 191
           R +   WQ  + EDSL AAG  G+E G+KLYVSNLD+GVTNEDI+ELFSE+G+LKR+ +H
Sbjct: 88  RARPFPWQHDLFEDSLRAAGIQGVEVGTKLYVSNLDHGVTNEDIRELFSELGELKRFAVH 147

Query: 192 YDKNGRPSGSAEVIFARSADALAAMKRYNNVQLDGKFMKIEIIGTSVAMPLSARVNVTGG 371
           YDKNG PSGSAEV++ R +DA AA+KRYNNV LDGK MKIEI+G++  +P+SARVNVT G
Sbjct: 148 YDKNGHPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEIVGSNSELPISARVNVT-G 206

Query: 372 ANGRGRRTVVMTP--------------GSGRPRASAPPNXXXXXXXXXXXXXXXXXXXXX 509
            NGR +RTVVMTP              G+GR R   P +                     
Sbjct: 207 VNGRRKRTVVMTPRGGQAGGGPTMPNRGAGRGRRGGPRS---GSGRGGGGGRGRGRGSRG 263

Query: 510 XXXXXXXXXKEPMEKSAEELNQELEHYHAEAMNTS 614
                    K+ +EKSAEEL++ELE YHAEAMN S
Sbjct: 264 GGGGRGRGRKDAVEKSAEELDKELETYHAEAMNIS 298


>gb|ADE77937.1| unknown [Picea sitchensis]
          Length = 274

 Score =  205 bits (521), Expect = 1e-50
 Identities = 109/204 (53%), Positives = 136/204 (66%), Gaps = 1/204 (0%)
 Frame = +3

Query: 6   FSRTKNVTWQRSMLEDSLVAAGYS-GIENGSKLYVSNLDYGVTNEDIKELFSEIGQLKRY 182
           F+R K V WQ  M EDS+ A G   G+E G+KLYVSNLD GV+N+DIKELF+E+G LK  
Sbjct: 72  FNRAKGVVWQHDMFEDSMAAIGMPIGLETGTKLYVSNLDSGVSNQDIKELFTEVGDLKSC 131

Query: 183 TLHYDKNGRPSGSAEVIFARSADALAAMKRYNNVQLDGKFMKIEIIGTSVAMPLSARVNV 362
            LHYD++GR +G+AEV+F +  DA+AA+KRYNNVQLDGK MKIE++GT +++PLSARVNV
Sbjct: 132 ALHYDRSGRSNGTAEVVFVKKVDAVAAVKRYNNVQLDGKPMKIELVGTGLSLPLSARVNV 191

Query: 363 TGGANGRGRRTVVMTPGSGRPRASAPPNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKE 542
           TG + GRGRRTVVMTPG  R  A A                                 + 
Sbjct: 192 TGTSAGRGRRTVVMTPGFTRAAADASMEQRGGNGNWNRRRGRRSNGRGRGGRRGRGRSQV 251

Query: 543 PMEKSAEELNQELEHYHAEAMNTS 614
           P +KSA EL++ELE+YH EAM TS
Sbjct: 252 P-DKSAAELDKELENYHTEAMQTS 274