BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00008858
         (1409 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002268657.1| PREDICTED: 50S ribosomal protein L3-2, chlor...   447   e-123
gb|ABK95213.1| unknown [Populus trichocarpa]                          434   e-119
ref|XP_002315468.1| predicted protein [Populus trichocarpa] gi|2...   432   e-119
ref|XP_002885213.1| hypothetical protein ARALYDRAFT_479224 [Arab...   421   e-115
ref|NP_566579.1| 50S ribosomal protein L3-2 [Arabidopsis thalian...   421   e-115

>ref|XP_002268657.1| PREDICTED: 50S ribosomal protein L3-2, chloroplastic [Vitis vinifera]
            gi|297736812|emb|CBI26013.3| unnamed protein product
            [Vitis vinifera]
          Length = 307

 Score =  447 bits (1149), Expect = e-123
 Identities = 229/325 (70%), Positives = 248/325 (76%)
 Frame = +1

Query: 175  MWVSSKTLISQLRRLTIGSRXXXXXXXXXXXXXXXXQLHLRRFSAESEFVEDDLDDDAAS 354
            M  +S+ LIS  R L+IG R                    RRF +ES   E+        
Sbjct: 1    MSAASRGLISGFRFLSIGPRTSAIVA----------SYQFRRFGSESLIDEEP------- 43

Query: 355  RRIIEAKSGVMTPKSTRTGAIAVKCGMTALWDKWGARIPITVLWLDDNIVTQVKTFDTEV 534
             RII  K GVM+P S RTGAIAVKCGM+ALWDKWGAR+PITVLWLDDNIV+QVKTF+ E 
Sbjct: 44   -RIIVPKPGVMSPNSKRTGAIAVKCGMSALWDKWGARVPITVLWLDDNIVSQVKTFEKEG 102

Query: 535  TTALQIGCGQKKEKHLTKPEVGHFRAQGVPMKRKLREFPVTEDALLPLGTPITVRHFVPG 714
              ALQ+GCGQKK KHLTKPEVGHFRAQGVP+KRKLREFPVTEDALLP+GT I VRHFVPG
Sbjct: 103  LNALQVGCGQKKAKHLTKPEVGHFRAQGVPLKRKLREFPVTEDALLPVGTTIGVRHFVPG 162

Query: 715  QYVDVTGITRGKGFQGGMKRWKFKGGPASHGASLSHRSIGSTGQRDAPGKVFXXXXXXXX 894
            QYVDVTGITRGKGFQGGMKRW FKG PASHGASLSHRSIGSTGQRDAPGKVF        
Sbjct: 163  QYVDVTGITRGKGFQGGMKRWGFKGMPASHGASLSHRSIGSTGQRDAPGKVFKGKKMPGR 222

Query: 895  XXXXQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIRDACYKKPDFSSLPFPTYFSP 1074
                QRTVKNVWVYKIDP RNLMWVRGQVPGAEGNFVFI+DA YKKPD S LPFPTYF  
Sbjct: 223  MGGKQRTVKNVWVYKIDPTRNLMWVRGQVPGAEGNFVFIKDAVYKKPDASILPFPTYFPA 282

Query: 1075 LGEETSELEPLVADLGELDPFMAAD 1149
              E+ + LEP+VADLG++DPFM AD
Sbjct: 283  EDEDPTVLEPIVADLGDIDPFMVAD 307


>gb|ABK95213.1| unknown [Populus trichocarpa]
          Length = 315

 Score =  434 bits (1117), Expect = e-119
 Identities = 216/286 (75%), Positives = 234/286 (81%)
 Frame = +1

Query: 292  LRRFSAESEFVEDDLDDDAASRRIIEAKSGVMTPKSTRTGAIAVKCGMTALWDKWGARIP 471
            LR FSA++  ++    +     RIIEAK GVMTP S RTG +AVKCGMTALWDKWGARIP
Sbjct: 33   LRCFSADA-LIDGSQVEYHQQSRIIEAKPGVMTPNSKRTGVVAVKCGMTALWDKWGARIP 91

Query: 472  ITVLWLDDNIVTQVKTFDTEVTTALQIGCGQKKEKHLTKPEVGHFRAQGVPMKRKLREFP 651
            ITVLW+DDNIV+QVKT + E   ALQ+GCGQKKEKHLTKPEVGHFRAQGVPMKRKLREFP
Sbjct: 92   ITVLWVDDNIVSQVKTVEKEGFFALQVGCGQKKEKHLTKPEVGHFRAQGVPMKRKLREFP 151

Query: 652  VTEDALLPLGTPITVRHFVPGQYVDVTGITRGKGFQGGMKRWKFKGGPASHGASLSHRSI 831
            VTEDALLP+GT + VRHFVPGQ+VDV GIT GKGFQGGMKR  FKGGPASHGASLSHRSI
Sbjct: 152  VTEDALLPVGTYVGVRHFVPGQFVDVAGITMGKGFQGGMKRHGFKGGPASHGASLSHRSI 211

Query: 832  GSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFI 1011
            GSTGQRDAPGKVF            QRTVKNVWVYKIDPARNLMWV+GQVPGAEGNFVFI
Sbjct: 212  GSTGQRDAPGKVFKGKKMPGRMGGVQRTVKNVWVYKIDPARNLMWVKGQVPGAEGNFVFI 271

Query: 1012 RDACYKKPDFSSLPFPTYFSPLGEETSELEPLVADLGELDPFMAAD 1149
            +D+ YKKPD   LPFPTYF    E+    EPLVADLGE+DPFM AD
Sbjct: 272  KDSVYKKPDIQMLPFPTYFG--AEDDDNAEPLVADLGEVDPFMVAD 315


>ref|XP_002315468.1| predicted protein [Populus trichocarpa] gi|222864508|gb|EEF01639.1|
            predicted protein [Populus trichocarpa]
          Length = 320

 Score =  432 bits (1112), Expect = e-119
 Identities = 217/286 (75%), Positives = 235/286 (82%)
 Frame = +1

Query: 292  LRRFSAESEFVEDDLDDDAASRRIIEAKSGVMTPKSTRTGAIAVKCGMTALWDKWGARIP 471
            LRRFS+++     ++     SR IIEAK GVMTP S RTG IAVKCGMTALWDKWGARIP
Sbjct: 38   LRRFSSDALVDGSEIQYQQPSR-IIEAKPGVMTPNSKRTGVIAVKCGMTALWDKWGARIP 96

Query: 472  ITVLWLDDNIVTQVKTFDTEVTTALQIGCGQKKEKHLTKPEVGHFRAQGVPMKRKLREFP 651
            ITVLW+DDNIV+QVKT + E   ALQ+GCGQKKEKHLTKPEVGHFRAQGVPMKRKLREFP
Sbjct: 97   ITVLWVDDNIVSQVKTVEKEGFFALQVGCGQKKEKHLTKPEVGHFRAQGVPMKRKLREFP 156

Query: 652  VTEDALLPLGTPITVRHFVPGQYVDVTGITRGKGFQGGMKRWKFKGGPASHGASLSHRSI 831
            VTE+ALLP+GT I VRHFVPGQ+VDV GIT GKGFQGGMKR  FKGGPASHGASLSHRSI
Sbjct: 157  VTENALLPVGTCIGVRHFVPGQFVDVAGITMGKGFQGGMKRHGFKGGPASHGASLSHRSI 216

Query: 832  GSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFI 1011
            GSTGQRDAPGKVF            QRTVKNVWVYKIDPARNLMWV+GQVPGAEGNFVFI
Sbjct: 217  GSTGQRDAPGKVFKGKKMPGRMGGVQRTVKNVWVYKIDPARNLMWVKGQVPGAEGNFVFI 276

Query: 1012 RDACYKKPDFSSLPFPTYFSPLGEETSELEPLVADLGELDPFMAAD 1149
            +D+ +KKPD   LPFPTYF    E+    EPLVADLGE+DPFM AD
Sbjct: 277  KDSVFKKPDIQILPFPTYFET--EDDDNSEPLVADLGEVDPFMVAD 320


>ref|XP_002885213.1| hypothetical protein ARALYDRAFT_479224 [Arabidopsis lyrata subsp.
            lyrata] gi|297331053|gb|EFH61472.1| hypothetical protein
            ARALYDRAFT_479224 [Arabidopsis lyrata subsp. lyrata]
          Length = 323

 Score =  421 bits (1082), Expect = e-115
 Identities = 212/287 (73%), Positives = 232/287 (80%), Gaps = 1/287 (0%)
 Frame = +1

Query: 292  LRRFSAESEFVE-DDLDDDAASRRIIEAKSGVMTPKSTRTGAIAVKCGMTALWDKWGARI 468
            LRRFS+++  V+    D   A  RIIEAK G M+  S RTG IAVKCGMTALWDKWGAR+
Sbjct: 37   LRRFSSDTGSVDVGGSDIIGAPNRIIEAKQGEMSQSSRRTGIIAVKCGMTALWDKWGARV 96

Query: 469  PITVLWLDDNIVTQVKTFDTEVTTALQIGCGQKKEKHLTKPEVGHFRAQGVPMKRKLREF 648
            PI++LW+DDNIV+QVKT + E   ALQIGCGQKK KHL+K  VGHFRAQGVP+KRKLREF
Sbjct: 97   PISILWVDDNIVSQVKTVEKEGIFALQIGCGQKKPKHLSKAVVGHFRAQGVPLKRKLREF 156

Query: 649  PVTEDALLPLGTPITVRHFVPGQYVDVTGITRGKGFQGGMKRWKFKGGPASHGASLSHRS 828
            PVTEDALLP+GT + VRHFVPGQYVDVTGITRGKGFQG MKR  F G P SHGASLSHRS
Sbjct: 157  PVTEDALLPVGTSLGVRHFVPGQYVDVTGITRGKGFQGCMKRHGFSGMPGSHGASLSHRS 216

Query: 829  IGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVF 1008
             GSTGQRDAPGKVF            QRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVF
Sbjct: 217  GGSTGQRDAPGKVFKGKKMAGRMGADQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVF 276

Query: 1009 IRDACYKKPDFSSLPFPTYFSPLGEETSELEPLVADLGELDPFMAAD 1149
            I+DA  KKPD S LPFPTY +P  E+ SELEPLVADLGE+DPFM A+
Sbjct: 277  IKDAWCKKPDISKLPFPTYLAPEDEDPSELEPLVADLGEVDPFMLAE 323


>ref|NP_566579.1| 50S ribosomal protein L3-2 [Arabidopsis thaliana]
            gi|42559534|sp|Q9LRN8.1|RK3B_ARATH RecName: Full=50S
            ribosomal protein L3-2, chloroplastic; Flags: Precursor
            gi|11994685|dbj|BAB02923.1| 50S ribosomal protein L3
            [Arabidopsis thaliana] gi|332642436|gb|AEE75957.1| 50S
            ribosomal protein L3-2 [Arabidopsis thaliana]
          Length = 324

 Score =  421 bits (1082), Expect = e-115
 Identities = 211/287 (73%), Positives = 233/287 (81%), Gaps = 1/287 (0%)
 Frame = +1

Query: 292  LRRFSAESEFVEDDLDDD-AASRRIIEAKSGVMTPKSTRTGAIAVKCGMTALWDKWGARI 468
            +RRFS+++  ++    D   A  RIIEAK G M+ +S RTG IAVKCGMTALWDKWG RI
Sbjct: 38   IRRFSSDTGLMDGGGSDIIGAQTRIIEAKQGEMSSRSKRTGIIAVKCGMTALWDKWGKRI 97

Query: 469  PITVLWLDDNIVTQVKTFDTEVTTALQIGCGQKKEKHLTKPEVGHFRAQGVPMKRKLREF 648
            PI++LW+DDNIV+QVKT + E   ALQIGCGQKK KHL+K  VGHFRAQGVP+KRKLREF
Sbjct: 98   PISILWVDDNIVSQVKTVEKEGIFALQIGCGQKKPKHLSKAVVGHFRAQGVPLKRKLREF 157

Query: 649  PVTEDALLPLGTPITVRHFVPGQYVDVTGITRGKGFQGGMKRWKFKGGPASHGASLSHRS 828
            PVTEDALLP+GT + VRHFVPGQYVDVTGITRGKGFQG MKR  F G PASHGASLSHRS
Sbjct: 158  PVTEDALLPVGTSLGVRHFVPGQYVDVTGITRGKGFQGCMKRHGFSGMPASHGASLSHRS 217

Query: 829  IGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVF 1008
             GSTGQRDAPGKVF            QRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVF
Sbjct: 218  GGSTGQRDAPGKVFKGRKMAGRMGADQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVF 277

Query: 1009 IRDACYKKPDFSSLPFPTYFSPLGEETSELEPLVADLGELDPFMAAD 1149
            I+DA  KKPD S LPFPTY +P  E+ SELEPLVADLGE+DPFM A+
Sbjct: 278  IKDAWCKKPDISKLPFPTYLAPEDEDPSELEPLVADLGEVDPFMLAE 324