BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00008852
         (865 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002279544.1| PREDICTED: DNA-directed RNA polymerases I, I...   190   4e-46
ref|XP_002282723.1| PREDICTED: DNA-directed RNA polymerases I, I...   190   4e-46
gb|AAD34613.1|AF153277_1 DNA-directed RNA polymerase IIa [Nicoti...   189   9e-46
ref|XP_004140788.1| PREDICTED: DNA-directed RNA polymerases I, I...   186   5e-45
ref|NP_001149930.1| LOC100283558 [Zea mays] gi|195635557|gb|ACG3...   186   6e-45

>ref|XP_002279544.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           RPABC2 isoform 1 [Vitis vinifera]
           gi|297741100|emb|CBI31831.3| unnamed protein product
           [Vitis vinifera]
          Length = 142

 Score =  190 bits (482), Expect = 4e-46
 Identities = 100/144 (69%), Positives = 106/144 (73%)
 Frame = -1

Query: 724 MADEDYNDPDMGYXXXXXXXXXXXXXXXXXXDKTNDEIPDPLMGXXXXXXXXXXXXXXRK 545
           MADE+YND DMGY                  +  N+++PD L                RK
Sbjct: 1   MADEEYNDVDMGYEDEPPEPEIEEGAEEEAENNNNEDVPDAL--EEQEKEVHETVERPRK 58

Query: 544 TSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD 365
           TSK+MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD
Sbjct: 59  TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD 118

Query: 364 GSYEDWGVDELIVEDSWKRQVGGD 293
           GSYEDWGVDELIVEDSWKRQVGGD
Sbjct: 119 GSYEDWGVDELIVEDSWKRQVGGD 142


>ref|XP_002282723.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           RPABC2 [Vitis vinifera] gi|302143496|emb|CBI22057.3|
           unnamed protein product [Vitis vinifera]
          Length = 141

 Score =  190 bits (482), Expect = 4e-46
 Identities = 100/144 (69%), Positives = 106/144 (73%)
 Frame = -1

Query: 724 MADEDYNDPDMGYXXXXXXXXXXXXXXXXXXDKTNDEIPDPLMGXXXXXXXXXXXXXXRK 545
           MAD+DYND DMGY                  +  N++IPD +                RK
Sbjct: 1   MADDDYNDMDMGYEDEPPEPEIEEGAEEDADNNNNEDIPDAI---ETAEKEQVPVERSRK 57

Query: 544 TSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD 365
           TSK+MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD
Sbjct: 58  TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD 117

Query: 364 GSYEDWGVDELIVEDSWKRQVGGD 293
           GSYEDWGVDELIVEDSWKRQVGGD
Sbjct: 118 GSYEDWGVDELIVEDSWKRQVGGD 141


>gb|AAD34613.1|AF153277_1 DNA-directed RNA polymerase IIa [Nicotiana tabacum]
           gi|4960152|gb|AAD34614.1|AF153278_1 DNA-directed RNA
           polymerase IIb [Nicotiana tabacum]
          Length = 143

 Score =  189 bits (479), Expect = 9e-46
 Identities = 100/143 (69%), Positives = 106/143 (74%)
 Frame = -1

Query: 724 MADEDYNDPDMGYXXXXXXXXXXXXXXXXXXDKTNDEIPDPLMGXXXXXXXXXXXXXXRK 545
           MAD+DY D D GY                  +  N++IPDPL+G              RK
Sbjct: 1   MADDDY-DMDGGYVDEPIEPEPDEGAEIEEDNGNNEDIPDPLLGEGEEKTEQEPVERPRK 59

Query: 544 TSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD 365
           TSK+MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD
Sbjct: 60  TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD 119

Query: 364 GSYEDWGVDELIVEDSWKRQVGG 296
           GSYEDWGVDELIVEDSWKRQVGG
Sbjct: 120 GSYEDWGVDELIVEDSWKRQVGG 142


>ref|XP_004140788.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           RPABC2-like [Cucumis sativus]
           gi|449485538|ref|XP_004157202.1| PREDICTED: DNA-directed
           RNA polymerases I, II, and III subunit RPABC2-like
           [Cucumis sativus]
          Length = 143

 Score =  186 bits (473), Expect = 5e-45
 Identities = 100/144 (69%), Positives = 105/144 (72%), Gaps = 1/144 (0%)
 Frame = -1

Query: 724 MADEDYNDPDMGYXXXXXXXXXXXXXXXXXXDKTNDEIP-DPLMGXXXXXXXXXXXXXXR 548
           MAD+DYND DMGY                  +  ND+IP +P+                 
Sbjct: 1   MADDDYNDLDMGYEDEPPEPEIEEGAEEELENNNNDDIPGEPVEAEEKEDEEPIVRAR-- 58

Query: 547 KTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLP 368
           KTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLP
Sbjct: 59  KTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLP 118

Query: 367 DGSYEDWGVDELIVEDSWKRQVGG 296
           DGSYEDWGVDELIVEDSWKRQVGG
Sbjct: 119 DGSYEDWGVDELIVEDSWKRQVGG 142


>ref|NP_001149930.1| LOC100283558 [Zea mays] gi|195635557|gb|ACG37247.1| DNA-directed
           RNA polymerases I, II, and III 14.4 kDa polypeptide [Zea
           mays]
          Length = 142

 Score =  186 bits (472), Expect = 6e-45
 Identities = 97/144 (67%), Positives = 106/144 (73%)
 Frame = -1

Query: 724 MADEDYNDPDMGYXXXXXXXXXXXXXXXXXXDKTNDEIPDPLMGXXXXXXXXXXXXXXRK 545
           MAD+DYN+ DMGY                   + N++ PD ++G              RK
Sbjct: 1   MADDDYNEIDMGYEDELPEPEIEEGAEEEL--ENNEDAPDDVIGGEGEDKEQEKTKRERK 58

Query: 544 TSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD 365
           T+K+MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELR RKIPFTIRRYLPD
Sbjct: 59  TTKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRARKIPFTIRRYLPD 118

Query: 364 GSYEDWGVDELIVEDSWKRQVGGD 293
           GSYEDWGVDELIVEDSWKRQVGGD
Sbjct: 119 GSYEDWGVDELIVEDSWKRQVGGD 142