BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00008845
         (1458 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002280604.1| PREDICTED: 30S ribosomal protein S1, chlorop...   665   0.0  
sp|P29344.1|RR1_SPIOL RecName: Full=30S ribosomal protein S1, ch...   649   0.0  
ref|XP_004147619.1| PREDICTED: 30S ribosomal protein S1, chlorop...   637   e-180
ref|XP_002519282.1| tex protein-relatedtranscription accessory p...   629   e-178
ref|XP_002316061.1| predicted protein [Populus trichocarpa] gi|2...   622   e-176

>ref|XP_002280604.1| PREDICTED: 30S ribosomal protein S1, chloroplastic [Vitis vinifera]
            gi|296083203|emb|CBI22839.3| unnamed protein product
            [Vitis vinifera]
          Length = 410

 Score =  665 bits (1715), Expect = 0.0
 Identities = 342/409 (83%), Positives = 367/409 (89%), Gaps = 1/409 (0%)
 Frame = -1

Query: 1392 MASLAQQFSGLRCSPLSSSHLSKPFCSK-PQKTIFSPIVSAVAISNAQTKERQRLKEMFE 1216
            MA LAQQF+GLRC P+SSS LSKPF  K PQK  F  IVSAVAISNAQTKER +LKEMFE
Sbjct: 1    MACLAQQFTGLRCPPISSSRLSKPFSPKQPQKPSFVRIVSAVAISNAQTKERLKLKEMFE 60

Query: 1215 EAYERCRTAPTEGISFTVDDFHNALEKYDFNSEIGTKVKGTVFCTEANGALVDITAKSSA 1036
            +AYERCRTAPTEG+SF+ DDF++AL+KYDFNSEIGTKVKGTVFCT+ NGALVDITAKSSA
Sbjct: 61   DAYERCRTAPTEGVSFSADDFYSALDKYDFNSEIGTKVKGTVFCTDTNGALVDITAKSSA 120

Query: 1035 YLPIHEACIHKIKHVEEAGIFPGVRDEFVIIGENEXXXXXXXXXXXLQYDLAWERCRQLQ 856
            YLP++EACIHKIKHVEEAGI PGVR+EFVIIGENE           +QYDLAWERCRQLQ
Sbjct: 121  YLPVYEACIHKIKHVEEAGIVPGVREEFVIIGENEADDSLILSLRSIQYDLAWERCRQLQ 180

Query: 855  AEDVVVKGKIISGNKGGVVAIVEGLRGFVPFSQISSKEPAEELLEREVPLKFVEVDEEQS 676
            AEDVVVKGK++  NKGGVVA+VEGLRGFVPFSQISSK  AEELL++E+P+KFVEVDEEQS
Sbjct: 181  AEDVVVKGKVVGANKGGVVALVEGLRGFVPFSQISSKTTAEELLDKELPVKFVEVDEEQS 240

Query: 675  RLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIA 496
            RLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDRV+DIA
Sbjct: 241  RLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVSDIA 300

Query: 495  TVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIA 316
            TVLQPGD LKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIA
Sbjct: 301  TVLQPGDILKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIA 360

Query: 315  QAEAMARADMLRFQPESGLTLSXXXXXXXXXXXXPAEGLDLSDIPPAEE 169
            QAEAMARADMLRFQPESGLTL+            PAEGLDLSD+PPAE+
Sbjct: 361  QAEAMARADMLRFQPESGLTLNSDGILGPVSADLPAEGLDLSDVPPAED 409


>sp|P29344.1|RR1_SPIOL RecName: Full=30S ribosomal protein S1, chloroplastic; AltName:
            Full=CS1; Flags: Precursor gi|18060|emb|CAA46927.1|
            ribosomal protein S1 [Spinacia oleracea]
            gi|170143|gb|AAA34045.1| chloroplast ribosomal protein S1
            [Spinacia oleracea]
          Length = 411

 Score =  649 bits (1673), Expect = 0.0
 Identities = 336/410 (81%), Positives = 366/410 (89%), Gaps = 2/410 (0%)
 Frame = -1

Query: 1392 MASLAQQFSG-LRCSPLSSSHLSKPFCSKPQ-KTIFSPIVSAVAISNAQTKERQRLKEMF 1219
            MASLAQQ +G LRC PLS+S+LSKPF  K   K  FSPIVSAVA+SNAQT+ERQ+LK++F
Sbjct: 1    MASLAQQLAGGLRCPPLSNSNLSKPFSPKHTLKPRFSPIVSAVAVSNAQTRERQKLKQLF 60

Query: 1218 EEAYERCRTAPTEGISFTVDDFHNALEKYDFNSEIGTKVKGTVFCTEANGALVDITAKSS 1039
            E+AYERCR AP EG+SFT+DDFH AL+KYDFNSE+G++VKGTVFCT+ANGALVDITAKSS
Sbjct: 61   EDAYERCRNAPMEGVSFTIDDFHTALDKYDFNSEMGSRVKGTVFCTDANGALVDITAKSS 120

Query: 1038 AYLPIHEACIHKIKHVEEAGIFPGVRDEFVIIGENEXXXXXXXXXXXLQYDLAWERCRQL 859
            AYLP+ EACI++IK+VEEAGI PGVR+EFVIIGENE           +QY+LAWERCRQL
Sbjct: 121  AYLPLAEACIYRIKNVEEAGIIPGVREEFVIIGENEADDSLILSLRQIQYELAWERCRQL 180

Query: 858  QAEDVVVKGKIISGNKGGVVAIVEGLRGFVPFSQISSKEPAEELLEREVPLKFVEVDEEQ 679
            QAEDVVVKGKI+  NKGGVVA+VEGLRGFVPFSQISSK  AEELLE+E+PLKFVEVDEEQ
Sbjct: 181  QAEDVVVKGKIVGANKGGVVALVEGLRGFVPFSQISSKSSAEELLEKEIPLKFVEVDEEQ 240

Query: 678  SRLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADI 499
            SRLV+SNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDRV+DI
Sbjct: 241  SRLVMSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVSDI 300

Query: 498  ATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRI 319
            ATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRI
Sbjct: 301  ATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRI 360

Query: 318  AQAEAMARADMLRFQPESGLTLSXXXXXXXXXXXXPAEGLDLSDIPPAEE 169
            AQAEAMARADMLRFQPESGLTLS            PAEGLDLS +PPA E
Sbjct: 361  AQAEAMARADMLRFQPESGLTLSSDGILGPLTSDLPAEGLDLSVVPPAVE 410


>ref|XP_004147619.1| PREDICTED: 30S ribosomal protein S1, chloroplastic-like [Cucumis
            sativus] gi|449517357|ref|XP_004165712.1| PREDICTED: 30S
            ribosomal protein S1, chloroplastic-like [Cucumis
            sativus]
          Length = 413

 Score =  637 bits (1644), Expect = e-180
 Identities = 328/413 (79%), Positives = 362/413 (87%), Gaps = 5/413 (1%)
 Frame = -1

Query: 1392 MASLAQQFSGLRCSPLSSSHLSKPFCSKP--QKTIFSPIVSAVA---ISNAQTKERQRLK 1228
            MAS+AQQF+GLRC+PLSSS LSKPF SK    K+   P+ +AV    I + QT+ER +LK
Sbjct: 1    MASMAQQFTGLRCAPLSSSRLSKPFSSKHFLNKSRSLPVQAAVISGPIPSPQTRERFKLK 60

Query: 1227 EMFEEAYERCRTAPTEGISFTVDDFHNALEKYDFNSEIGTKVKGTVFCTEANGALVDITA 1048
            E+FEEAYERCR AP EGISFT++DFH ALEKYDF+SE+GTKVKGTVFCT+ NGALVDITA
Sbjct: 61   EVFEEAYERCRNAPVEGISFTLEDFHAALEKYDFDSELGTKVKGTVFCTDNNGALVDITA 120

Query: 1047 KSSAYLPIHEACIHKIKHVEEAGIFPGVRDEFVIIGENEXXXXXXXXXXXLQYDLAWERC 868
            KSSAYLP+ EACIH+IKHVEEAG+FPG+R+EFVIIGENE           +QYDLAWERC
Sbjct: 121  KSSAYLPLQEACIHRIKHVEEAGVFPGLREEFVIIGENESDDSLILSLRSIQYDLAWERC 180

Query: 867  RQLQAEDVVVKGKIISGNKGGVVAIVEGLRGFVPFSQISSKEPAEELLEREVPLKFVEVD 688
            RQLQAEDVVVKGK++  NKGGVVA+VEGLRGFVPFSQIS+K  AEELL +E+PLKFVEVD
Sbjct: 181  RQLQAEDVVVKGKVVDANKGGVVAVVEGLRGFVPFSQISTKSNAEELLSKELPLKFVEVD 240

Query: 687  EEQSRLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDRV 508
            EEQSRLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDR+
Sbjct: 241  EEQSRLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDRI 300

Query: 507  ADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFR 328
            +DIATVLQPGD+LKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFR
Sbjct: 301  SDIATVLQPGDSLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFR 360

Query: 327  QRIAQAEAMARADMLRFQPESGLTLSXXXXXXXXXXXXPAEGLDLSDIPPAEE 169
            QRIAQAEA+ARADMLRFQPESGLTL+            P EGLDL+D+PPAEE
Sbjct: 361  QRIAQAEALARADMLRFQPESGLTLTTDGILGPITPELPVEGLDLNDVPPAEE 413


>ref|XP_002519282.1| tex protein-relatedtranscription accessory protein, putative [Ricinus
            communis] gi|223541597|gb|EEF43146.1| tex
            protein-relatedtranscription accessory protein, putative
            [Ricinus communis]
          Length = 412

 Score =  629 bits (1622), Expect = e-178
 Identities = 328/414 (79%), Positives = 362/414 (87%), Gaps = 6/414 (1%)
 Frame = -1

Query: 1392 MASLAQQFSGLRCSPLSSSHLSKPFCS-----KPQKTIFSPIVSAVAISNAQTKERQRLK 1228
            MASLAQQF+GLRC+ LS+  ++K   S     +P+K+ F  +VSAVAISNAQTKER++LK
Sbjct: 1    MASLAQQFTGLRCTALSNCRVTKKASSLLSSSRPRKSRF--VVSAVAISNAQTKEREKLK 58

Query: 1227 EMFEEAYERCRTAPTEGISFTVDDFHNALEKYDFNSEIGTKVKGTVFCTEANGALVDITA 1048
            ++FE+AYERCRTAP EG++FT +DFH+ALEKYDFNSEIGT VKGTVF T+ANGA+VDITA
Sbjct: 59   QLFEDAYERCRTAPMEGVAFTAEDFHSALEKYDFNSEIGTTVKGTVFMTDANGAVVDITA 118

Query: 1047 KSSAYLPIHEACIHKIKHVEEAGIFPGVRDEFVIIGENEXXXXXXXXXXXLQYDLAWERC 868
            KSSAYLP+ EACIHKIKHVEEAGI PG+  EFVIIGENE           +QYDL+WERC
Sbjct: 119  KSSAYLPVQEACIHKIKHVEEAGIVPGLTQEFVIIGENEADDSLILSLRAIQYDLSWERC 178

Query: 867  RQLQAEDVVVKGKIISGNKGGVVAIVEG-LRGFVPFSQISSKEPAEELLEREVPLKFVEV 691
            RQLQAEDV+VKGK++  NKGGVVAIVEG LRGFVPFSQISSK  AEELLE+E+PLKFV+V
Sbjct: 179  RQLQAEDVIVKGKVVGANKGGVVAIVEGGLRGFVPFSQISSKSTAEELLEKELPLKFVDV 238

Query: 690  DEEQSRLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDR 511
            DEEQSRLVLSNRKAMADSQAQLGIGSVV GTVQSLKPYGAFIDIGGINGLLHVSQISHDR
Sbjct: 239  DEEQSRLVLSNRKAMADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDR 298

Query: 510  VADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTF 331
            V+DIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTF
Sbjct: 299  VSDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTF 358

Query: 330  RQRIAQAEAMARADMLRFQPESGLTLSXXXXXXXXXXXXPAEGLDLSDIPPAEE 169
            RQRIAQAEAMARADMLRFQPESGL+LS            PAEGLDLSD+P AE+
Sbjct: 359  RQRIAQAEAMARADMLRFQPESGLSLSSDGILGPVTSDMPAEGLDLSDVPSAED 412


>ref|XP_002316061.1| predicted protein [Populus trichocarpa] gi|222865101|gb|EEF02232.1|
            predicted protein [Populus trichocarpa]
          Length = 412

 Score =  622 bits (1603), Expect = e-176
 Identities = 322/411 (78%), Positives = 357/411 (86%), Gaps = 3/411 (0%)
 Frame = -1

Query: 1392 MASLAQQFSGLRCSPLSSSHLSKPFC--SKPQKTIFSPIVS-AVAISNAQTKERQRLKEM 1222
            MASLAQQF+GL C PLSSS L++     SKP++   S + + AVAISN QTKER +LKE+
Sbjct: 1    MASLAQQFAGLICPPLSSSRLTERAATFSKPKRAANSVVTAKAVAISNVQTKERHKLKEL 60

Query: 1221 FEEAYERCRTAPTEGISFTVDDFHNALEKYDFNSEIGTKVKGTVFCTEANGALVDITAKS 1042
            FEEAYERCRTAP EG+SFT++DFH AL+ YD+NSEIGT+VKGTVF T+ NGA VDITAKS
Sbjct: 61   FEEAYERCRTAPLEGVSFTLEDFHAALDTYDYNSEIGTRVKGTVFMTDNNGAFVDITAKS 120

Query: 1041 SAYLPIHEACIHKIKHVEEAGIFPGVRDEFVIIGENEXXXXXXXXXXXLQYDLAWERCRQ 862
            SAYLP+ EA IHKIK VEEAGI PG+R+EFVIIGENE           +QY+LAWERCRQ
Sbjct: 121  SAYLPVQEASIHKIKRVEEAGIVPGMREEFVIIGENEADDSLILSLRSIQYELAWERCRQ 180

Query: 861  LQAEDVVVKGKIISGNKGGVVAIVEGLRGFVPFSQISSKEPAEELLEREVPLKFVEVDEE 682
            LQAED +VKGK++ GN+GGVVA+VEGL+GFVPFSQISSK  AEELL++EVPLKFV+VDEE
Sbjct: 181  LQAEDAIVKGKVVGGNRGGVVAVVEGLQGFVPFSQISSKSSAEELLDKEVPLKFVDVDEE 240

Query: 681  QSRLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVAD 502
            QSRLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDRV+D
Sbjct: 241  QSRLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVSD 300

Query: 501  IATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQR 322
            I+TVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMA+TFRQR
Sbjct: 301  ISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMARTFRQR 360

Query: 321  IAQAEAMARADMLRFQPESGLTLSXXXXXXXXXXXXPAEGLDLSDIPPAEE 169
            IAQAEAMARADMLRFQPESGL LS            PAEGLDLSD+PPA+E
Sbjct: 361  IAQAEAMARADMLRFQPESGLPLSSGGILGPNISDLPAEGLDLSDVPPADE 411