BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00008819
         (365 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002275085.1| PREDICTED: pentatricopeptide repeat-containi...   147   9e-34
ref|XP_002531291.1| pentatricopeptide repeat-containing protein,...   144   1e-32
ref|XP_002328495.1| predicted protein [Populus trichocarpa] gi|2...   126   2e-27
ref|NP_187126.1| pentatricopeptide repeat-containing protein [Ar...   116   2e-24
ref|XP_004171232.1| PREDICTED: pentatricopeptide repeat-containi...   115   4e-24

>ref|XP_002275085.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
           mitochondrial-like [Vitis vinifera]
          Length = 654

 Score =  147 bits (371), Expect = 9e-34
 Identities = 76/121 (62%), Positives = 91/121 (75%)
 Frame = -3

Query: 363 ILFNYHTPMPNLYIYNIMISALSFSSTQPFALYNSMLQLHIYPDKHTLLFLLKATKSLSQ 184
           +LF +HTP PNLYIYN MISALS S  Q FA YNS+L   IYP++ T LFLL+A+K LSQ
Sbjct: 86  LLFRHHTPHPNLYIYNTMISALSLSLNQSFAFYNSLLSSCIYPNRSTFLFLLQASKFLSQ 145

Query: 183 GKQIHNHAIITGFTSYGYLQNSLIKMYVEYGEMSIARQVIQQMPQKDAVSFNILISGCAR 4
             QIH HAIITG   YGYLQN+L+K+Y+E  +M +A QV QQM   DAVSFNI+I G A+
Sbjct: 146 VMQIHCHAIITGSFYYGYLQNTLMKIYLENEKMGLAYQVFQQMAAPDAVSFNIMIFGYAK 205

Query: 3   K 1
           K
Sbjct: 206 K 206


>ref|XP_002531291.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223529124|gb|EEF31104.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 517

 Score =  144 bits (362), Expect = 1e-32
 Identities = 71/121 (58%), Positives = 93/121 (76%)
 Frame = -3

Query: 363 ILFNYHTPMPNLYIYNIMISALSFSSTQPFALYNSMLQLHIYPDKHTLLFLLKATKSLSQ 184
           ILFN++TP PNLYIYN MISALS ++ QP  LYNSML   I PDKHTLL+LL + + +S+
Sbjct: 86  ILFNHYTPYPNLYIYNTMISALSSATAQP--LYNSMLSTGIGPDKHTLLYLLHSARHVSE 143

Query: 183 GKQIHNHAIITGFTSYGYLQNSLIKMYVEYGEMSIARQVIQQMPQKDAVSFNILISGCAR 4
            KQ+  HAII G ++Y YLQNSLIK+Y+E G   +A ++ +QMP  D VSFNI+I+GCA+
Sbjct: 144 VKQVQCHAIILGLSTYRYLQNSLIKVYLENGLFCLAHKIFRQMPAPDVVSFNIMITGCAK 203

Query: 3   K 1
           +
Sbjct: 204 Q 204



 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 40/122 (32%), Positives = 65/122 (53%), Gaps = 9/122 (7%)
 Frame = -3

Query: 342 PMPNLYIYNIMIS--ALSFSSTQPFALYNSMLQLHIYPDKHTLLFLLKATKSLSQ---GK 178
           P P++  +NIMI+  A      +   L   M+ L + PD+ T+L LL +   L +   GK
Sbjct: 187 PAPDVVSFNIMITGCAKQGCGLEAIQLLYDMMALDLKPDEFTMLGLLVSCGKLGEARFGK 246

Query: 177 QIH----NHAIITGFTSYGYLQNSLIKMYVEYGEMSIARQVIQQMPQKDAVSFNILISGC 10
            +H        IT  +S   L N+L+ MYV+  E+ +A +    + +KD VS+N +I+GC
Sbjct: 247 TVHAWIERRKSIT--SSNLILGNALLDMYVKCQELDLAHRTFSALTEKDVVSWNTIIAGC 304

Query: 9   AR 4
           A+
Sbjct: 305 AK 306


>ref|XP_002328495.1| predicted protein [Populus trichocarpa] gi|222838210|gb|EEE76575.1|
           predicted protein [Populus trichocarpa]
          Length = 580

 Score =  126 bits (317), Expect = 2e-27
 Identities = 65/121 (53%), Positives = 85/121 (70%), Gaps = 1/121 (0%)
 Frame = -3

Query: 360 LFNYHTPMPNLYIYNIMISALS-FSSTQPFALYNSMLQLHIYPDKHTLLFLLKATKSLSQ 184
           LFN+ TP PNL+IYN +ISA S     + F LYN +L     PDK TLL+LL+A   +SQ
Sbjct: 22  LFNHFTPNPNLFIYNTLISAFSSLKKIESFYLYNVLLSSGECPDKQTLLYLLQAVNFISQ 81

Query: 183 GKQIHNHAIITGFTSYGYLQNSLIKMYVEYGEMSIARQVIQQMPQKDAVSFNILISGCAR 4
            KQIH  AI+TG  S+GYLQN+LIK+Y+E G + +A QV ++MP  D VSFN++I G A+
Sbjct: 82  VKQIHCQAIVTGLFSFGYLQNTLIKVYLENGLVRLAHQVFEKMPSPDIVSFNVMIVGYAK 141

Query: 3   K 1
           K
Sbjct: 142 K 142


>ref|NP_187126.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75207287|sp|Q9SR01.1|PP212_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At3g04750, mitochondrial; Flags: Precursor
           gi|6175175|gb|AAF04901.1|AC011437_16 hypothetical
           protein [Arabidopsis thaliana]
           gi|332640610|gb|AEE74131.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 661

 Score =  116 bits (291), Expect = 2e-24
 Identities = 57/122 (46%), Positives = 83/122 (68%), Gaps = 1/122 (0%)
 Frame = -3

Query: 363 ILFNYHTPMPNLYIYNIMISALSFSSTQPFALYNSMLQLHIYPDKHTLLFLLKATKSLSQ 184
           +LF   TP PN+++YN MISA+S S  + F LY+SM++  + PD+ T L+L+KA+  LS+
Sbjct: 89  LLFLNFTPNPNVFVYNTMISAVSSSKNECFGLYSSMIRHRVSPDRQTFLYLMKASSFLSE 148

Query: 183 GKQIHNHAIITGFTSYG-YLQNSLIKMYVEYGEMSIARQVIQQMPQKDAVSFNILISGCA 7
            KQIH H I++G  S G YL NSL+K Y+E G   +A +V  +MP  D  SFN++I G A
Sbjct: 149 VKQIHCHIIVSGCLSLGNYLWNSLVKFYMELGNFGVAEKVFARMPHPDVSSFNVMIVGYA 208

Query: 6   RK 1
           ++
Sbjct: 209 KQ 210


>ref|XP_004171232.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
           mitochondrial-like [Cucumis sativus]
          Length = 586

 Score =  115 bits (288), Expect = 4e-24
 Identities = 58/121 (47%), Positives = 81/121 (66%), Gaps = 1/121 (0%)
 Frame = -3

Query: 363 ILFNYHTPMPNLYIYNIMISALSFSSTQPFALYNSMLQLHIYPDKHTLLFLLKATKSLSQ 184
           +LFN+ TP PNLYI+N MI    FS+ + F +Y SMLQ   YPD+ T L+LL+ TK +++
Sbjct: 21  LLFNHFTPYPNLYIFNTMILGFPFSNEKAFTIYRSMLQNGTYPDRQTFLYLLQTTKFVAE 80

Query: 183 GKQIHNHAIITGFTS-YGYLQNSLIKMYVEYGEMSIARQVIQQMPQKDAVSFNILISGCA 7
            KQIH HA++ G  S   YL+NSLIK YV+ G    ARQ+  +M  ++ VS+N +I G A
Sbjct: 81  VKQIHCHALVFGLLSKEEYLRNSLIKRYVDNGCFECARQLFDEMSDRNVVSYNTMILGFA 140

Query: 6   R 4
           +
Sbjct: 141 K 141