BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00008780
         (1063 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002270967.1| PREDICTED: U1 small nuclear ribonucleoprotei...   321   2e-85
emb|CAA90282.1| U1snRNP-specific protein, U1A [Solanum tuberosum]     312   8e-83
ref|XP_003554737.1| PREDICTED: U1 small nuclear ribonucleoprotei...   312   1e-82
ref|NP_001235453.1| uncharacterized protein LOC100500002 [Glycin...   311   2e-82
gb|ACU24174.1| unknown [Glycine max]                                  310   4e-82

>ref|XP_002270967.1| PREDICTED: U1 small nuclear ribonucleoprotein A [Vitis vinifera]
          Length = 245

 Score =  321 bits (822), Expect = 2e-85
 Identities = 168/245 (68%), Positives = 184/245 (75%), Gaps = 5/245 (2%)
 Frame = +1

Query: 73  ASMSNAGDVPPNQTIYXXXXXXXXXXXXXXXSLFAVFSQFGKILEVLAFKTLKHKGQAWV 252
           A ++  G++ PN TIY               SLFAVFSQFGKI+EVLAFKTLKHKGQAWV
Sbjct: 2   AELNTGGEISPNMTIYINNLNEKIKLEELKKSLFAVFSQFGKIMEVLAFKTLKHKGQAWV 61

Query: 253 VFEDASSATNALKKMDGFPFYDKSMRIQYAKTKSDVIAKADGTFVPXXXXXXXXXXXXXX 432
           VFE+ SSATNAL++M GFPFYDK MRIQYAKTKSDVIAKADGTFVP              
Sbjct: 62  VFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDVIAKADGTFVP-RERRRRHDDRAGR 120

Query: 433 XXXQQHDANQTGIGLN-AYPGAYGSNPTL---PYHGGAKS-LPEAPAPPNNILFVQNLPH 597
              +QHDANQ G+G+N AY GAYG+ P L   PY GGAKS +PEAPAPPNNILF+QNLPH
Sbjct: 121 KRREQHDANQAGVGVNPAYGGAYGAAPPLSQIPYLGGAKSAVPEAPAPPNNILFIQNLPH 180

Query: 598 ETTPIMLQMLFCQYEGFKEVRMVEAKPGIAFVEYGNEAQSTVGMHALQSFKITPQNPMLI 777
           E TP+MLQM FCQY GFKEVRMVEAKPGIAFVEYG+E QSTV M  LQ  KI  QNPMLI
Sbjct: 181 EATPMMLQMFFCQYPGFKEVRMVEAKPGIAFVEYGDEMQSTVAMQGLQGLKINQQNPMLI 240

Query: 778 TYAKK 792
           TYAKK
Sbjct: 241 TYAKK 245


>emb|CAA90282.1| U1snRNP-specific protein, U1A [Solanum tuberosum]
          Length = 253

 Score =  312 bits (800), Expect = 8e-83
 Identities = 162/241 (67%), Positives = 184/241 (76%), Gaps = 5/241 (2%)
 Frame = +1

Query: 85  NAGDVPPNQTIYXXXXXXXXXXXXXXXSLFAVFSQFGKILEVLAFKTLKHKGQAWVVFED 264
           + G+ PPN TIY               S+ AVFSQFGKILEVLAFKTLKHKGQAWVVFE+
Sbjct: 15  SGGETPPNVTIYINNLNEKIKLEELKKSMHAVFSQFGKILEVLAFKTLKHKGQAWVVFEE 74

Query: 265 ASSATNALKKMDGFPFYDKSMRIQYAKTKSDVIAKADGTFVPXXXXXXXXXXXXXXXXXQ 444
            SSA+NAL++M GFPFYDK MRIQYAKTKSDV+AKADGTFVP                  
Sbjct: 75  VSSASNALRQMQGFPFYDKPMRIQYAKTKSDVVAKADGTFVPREKRKRHEDKGRKKK--D 132

Query: 445 QHDANQTGIGLN-AYPGAYGSNPT---LPYHGGAKS-LPEAPAPPNNILFVQNLPHETTP 609
           Q D+NQ G+GLN AY GAYG+ P    +PY GGAK+ +PEAPAPPN+ILFVQNLPH++TP
Sbjct: 133 QQDSNQAGMGLNPAYAGAYGAAPPFSQIPYMGGAKAAVPEAPAPPNSILFVQNLPHQSTP 192

Query: 610 IMLQMLFCQYEGFKEVRMVEAKPGIAFVEYGNEAQSTVGMHALQSFKITPQNPMLITYAK 789
           +MLQMLFCQY GFKEVRM+EAKPGIAF+EYG+E QSTV M ALQ FKIT +NPMLITYAK
Sbjct: 193 MMLQMLFCQYPGFKEVRMIEAKPGIAFIEYGDEMQSTVAMQALQGFKITAENPMLITYAK 252

Query: 790 K 792
           K
Sbjct: 253 K 253


>ref|XP_003554737.1| PREDICTED: U1 small nuclear ribonucleoprotein A-like [Glycine max]
          Length = 241

 Score =  312 bits (799), Expect = 1e-82
 Identities = 162/235 (68%), Positives = 180/235 (76%), Gaps = 2/235 (0%)
 Frame = +1

Query: 94  DVPPNQTIYXXXXXXXXXXXXXXXSLFAVFSQFGKILEVLAFKTLKHKGQAWVVFEDASS 273
           ++P N TIY               SL AVF+QFGKILEVLAFKTLKHKGQAWVVFEDASS
Sbjct: 9   EIPQNNTIYINNLNEKIKIDELKKSLNAVFTQFGKILEVLAFKTLKHKGQAWVVFEDASS 68

Query: 274 ATNALKKMDGFPFYDKSMRIQYAKTKSDVIAKADGTFVPXXXXXXXXXXXXXXXXXQQHD 453
           A+NAL++M GFPFYDK MRIQYAKTKSD+IAKADGTFVP                  QHD
Sbjct: 69  ASNALRQMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPREKRKRHDEKAKKRK--DQHD 126

Query: 454 ANQTGIGLN-AYPGAYGSNPTLPYHGGAKSL-PEAPAPPNNILFVQNLPHETTPIMLQML 627
           +N  G+GLN AY GAYG+ P + Y GGAKS+ PEAPAPPNNILF+QNLP+++TP+MLQML
Sbjct: 127 SNLAGMGLNPAYAGAYGAAPAIAYPGGAKSMVPEAPAPPNNILFIQNLPNDSTPMMLQML 186

Query: 628 FCQYEGFKEVRMVEAKPGIAFVEYGNEAQSTVGMHALQSFKITPQNPMLITYAKK 792
           F QY GFKEVRMVE KPGIAFVEYG+E QSTV M  LQ FKITPQNPMLITYAKK
Sbjct: 187 FLQYPGFKEVRMVETKPGIAFVEYGDEMQSTVAMQTLQGFKITPQNPMLITYAKK 241


>ref|NP_001235453.1| uncharacterized protein LOC100500002 [Glycine max]
           gi|255628437|gb|ACU14563.1| unknown [Glycine max]
          Length = 241

 Score =  311 bits (796), Expect = 2e-82
 Identities = 162/235 (68%), Positives = 180/235 (76%), Gaps = 2/235 (0%)
 Frame = +1

Query: 94  DVPPNQTIYXXXXXXXXXXXXXXXSLFAVFSQFGKILEVLAFKTLKHKGQAWVVFEDASS 273
           ++P + TIY               SL AVF+QFGKILEVLAFKTLKHKGQAWVVFEDASS
Sbjct: 9   EIPQSNTIYINNLNEKIKIDELKKSLNAVFTQFGKILEVLAFKTLKHKGQAWVVFEDASS 68

Query: 274 ATNALKKMDGFPFYDKSMRIQYAKTKSDVIAKADGTFVPXXXXXXXXXXXXXXXXXQQHD 453
           A+NAL++M GFPFYDK MRIQYAKTKSD+IAKADGTFVP                  QHD
Sbjct: 69  ASNALRQMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPREKRKRHDDKAKKRK--DQHD 126

Query: 454 ANQTGIGLN-AYPGAYGSNPTLPYHGGAKSL-PEAPAPPNNILFVQNLPHETTPIMLQML 627
           AN  G+GLN AY GAYG+ P + Y GGAKS+ PEAPAPPNNILF+QNLP+++TP+MLQML
Sbjct: 127 ANLAGMGLNPAYAGAYGAAPAIAYPGGAKSMVPEAPAPPNNILFIQNLPNDSTPMMLQML 186

Query: 628 FCQYEGFKEVRMVEAKPGIAFVEYGNEAQSTVGMHALQSFKITPQNPMLITYAKK 792
           F QY GFKEVRMVE KPGIAFVEYG+E QSTV M  LQ FKITPQNPMLITYAKK
Sbjct: 187 FLQYPGFKEVRMVETKPGIAFVEYGDEMQSTVAMQTLQCFKITPQNPMLITYAKK 241


>gb|ACU24174.1| unknown [Glycine max]
          Length = 241

 Score =  310 bits (794), Expect = 4e-82
 Identities = 161/235 (68%), Positives = 179/235 (76%), Gaps = 2/235 (0%)
 Frame = +1

Query: 94  DVPPNQTIYXXXXXXXXXXXXXXXSLFAVFSQFGKILEVLAFKTLKHKGQAWVVFEDASS 273
           ++P N  IY               SL AVF+QFGKILEVLAFKTLKHKGQAWVVFEDASS
Sbjct: 9   EIPQNNAIYINNLNEKIKIDELKKSLNAVFTQFGKILEVLAFKTLKHKGQAWVVFEDASS 68

Query: 274 ATNALKKMDGFPFYDKSMRIQYAKTKSDVIAKADGTFVPXXXXXXXXXXXXXXXXXQQHD 453
           A+NAL++M GFPFYDK MRIQYAKTKSD+IAKADGTFVP                  QHD
Sbjct: 69  ASNALRQMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPREKRKRHDEKAKKRK--DQHD 126

Query: 454 ANQTGIGLN-AYPGAYGSNPTLPYHGGAKSL-PEAPAPPNNILFVQNLPHETTPIMLQML 627
           +N  G+GLN AY GAYG+ P + Y GGAKS+ PEAPAPPNNILF+QNLP+++TP+MLQML
Sbjct: 127 SNLAGMGLNPAYAGAYGAAPAIAYPGGAKSMVPEAPAPPNNILFIQNLPNDSTPMMLQML 186

Query: 628 FCQYEGFKEVRMVEAKPGIAFVEYGNEAQSTVGMHALQSFKITPQNPMLITYAKK 792
           F QY GFKEVRMVE KPGIAFVEYG+E QSTV M  LQ FKITPQNPMLITYAKK
Sbjct: 187 FLQYPGFKEVRMVETKPGIAFVEYGDEMQSTVAMQTLQGFKITPQNPMLITYAKK 241