BLASTX nr result
ID: Cimicifuga21_contig00008775
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cimicifuga21_contig00008775
(1197 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004152039.1| PREDICTED: pentatricopeptide repeat-containi... 107 5e-27
ref|XP_004165913.1| PREDICTED: pentatricopeptide repeat-containi... 106 6e-27
emb|CBI20254.3| unnamed protein product [Vitis vinifera] 89 1e-25
ref|XP_002301860.1| predicted protein [Populus trichocarpa] gi|2... 98 2e-24
ref|XP_003530855.1| PREDICTED: pentatricopeptide repeat-containi... 100 3e-23
>ref|XP_004152039.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g06145-like [Cucumis sativus]
Length = 697
Score = 107 bits (266), Expect(2) = 5e-27
Identities = 52/88 (59%), Positives = 64/88 (72%)
Frame = +2
Query: 239 FLIKFELN*IGECMKVFEEIPESDVFAWTMMISSYVRVGGMDSAQRLFEEMLDRNVATWN 418
F K E+ + E KVF+E+ E D FAWT M+S+ RVG MDSA++LFEEM +RN ATWN
Sbjct: 279 FYSKLEI--LSEARKVFDEMCERDAFAWTAMVSALARVGDMDSARKLFEEMPERNTATWN 336
Query: 419 TMFAGYVRLGNLESATTLCNQMPAKDLL 502
TM GY RLGN+ESA L NQMP KD++
Sbjct: 337 TMIDGYARLGNVESAELLFNQMPTKDII 364
Score = 41.6 bits (96), Expect(2) = 5e-27
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Frame = +1
Query: 67 PFRDVDFYL-VMQNYRVSPSSFRFSSLPKDCILVSALGLGRSVRSQIWNRG 216
PFR + Y+ +++ V P+S+ FSSL K C + A+ LG+ V IW +G
Sbjct: 215 PFRALQCYVHMLEESNVLPTSYTFSSLVKACTFMCAVELGQMVHCHIWKKG 265
Score = 57.8 bits (138), Expect = 5e-06
Identities = 25/81 (30%), Positives = 46/81 (56%)
Frame = +2
Query: 281 KVFEEIPESDVFAWTMMISSYVRVGGMDSAQRLFEEMLDRNVATWNTMFAGYVRLGNLES 460
K+FEE+PE + W MI Y R+G ++SA+ LF +M +++ +W TM Y + +
Sbjct: 322 KLFEEMPERNTATWNTMIDGYARLGNVESAELLFNQMPTKDIISWTTMITCYSQNKQYQD 381
Query: 461 ATTLCNQMPAKDLLFEESLLS 523
A + ++M ++ +E +S
Sbjct: 382 ALAIYSEMRLNGIIPDEVTMS 402
>ref|XP_004165913.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g06145-like [Cucumis sativus]
Length = 600
Score = 106 bits (265), Expect(2) = 6e-27
Identities = 52/88 (59%), Positives = 64/88 (72%)
Frame = +2
Query: 239 FLIKFELN*IGECMKVFEEIPESDVFAWTMMISSYVRVGGMDSAQRLFEEMLDRNVATWN 418
F K E+ + E KVF+E+ E D FAWT M+S+ RVG MDSA++LFEEM +RN ATWN
Sbjct: 182 FYSKLEI--LSEARKVFDEMCERDAFAWTAMLSALARVGDMDSARKLFEEMPERNTATWN 239
Query: 419 TMFAGYVRLGNLESATTLCNQMPAKDLL 502
TM GY RLGN+ESA L NQMP KD++
Sbjct: 240 TMIDGYTRLGNVESAELLFNQMPTKDII 267
Score = 41.6 bits (96), Expect(2) = 6e-27
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Frame = +1
Query: 67 PFRDVDFYL-VMQNYRVSPSSFRFSSLPKDCILVSALGLGRSVRSQIWNRG 216
PFR + Y+ +++ V P+S+ FSSL K C + A+ LG+ V IW +G
Sbjct: 118 PFRALQCYVHMLEESNVLPTSYTFSSLVKACTFMCAVELGQMVHCHIWKKG 168
Score = 57.8 bits (138), Expect = 5e-06
Identities = 25/81 (30%), Positives = 46/81 (56%)
Frame = +2
Query: 281 KVFEEIPESDVFAWTMMISSYVRVGGMDSAQRLFEEMLDRNVATWNTMFAGYVRLGNLES 460
K+FEE+PE + W MI Y R+G ++SA+ LF +M +++ +W TM Y + +
Sbjct: 225 KLFEEMPERNTATWNTMIDGYTRLGNVESAELLFNQMPTKDIISWTTMITCYSQNKQYQD 284
Query: 461 ATTLCNQMPAKDLLFEESLLS 523
A + ++M ++ +E +S
Sbjct: 285 ALAIYSEMRLNGIIPDEVTMS 305
>emb|CBI20254.3| unnamed protein product [Vitis vinifera]
Length = 494
Score = 89.0 bits (219), Expect(2) = 1e-25
Identities = 43/79 (54%), Positives = 56/79 (70%)
Frame = +2
Query: 266 IGECMKVFEEIPESDVFAWTMMISSYVRVGGMDSAQRLFEEMLDRNVATWNTMFAGYVRL 445
I E +VF+E+ E DVFAWT MIS + R G M SA++LF+EM RN A+WN M GY RL
Sbjct: 161 IVEARRVFDEMSERDVFAWTTMISVHARTGDMSSARQLFDEMPVRNTASWNAMIDGYSRL 220
Query: 446 GNLESATTLCNQMPAKDLL 502
N+ESA L +QMP +D++
Sbjct: 221 RNVESAELLFSQMPNRDII 239
Score = 55.1 bits (131), Expect(2) = 1e-25
Identities = 30/67 (44%), Positives = 40/67 (59%)
Frame = +1
Query: 16 IWNSQVL*TR*LIQFCSPFRDVDFYLVMQNYRVSPSSFRFSSLPKDCILVSALGLGRSVR 195
++N+ + R L+Q P + +D YL M +VSP+SF FSSL K C LVS LG G +V
Sbjct: 77 VYNAMI---RALVQCYHPVQALDCYLDMVQAQVSPTSFTFSSLVKACSLVSELGFGEAVH 133
Query: 196 SQIWNRG 216
IW G
Sbjct: 134 GHIWKYG 140
>ref|XP_002301860.1| predicted protein [Populus trichocarpa] gi|222843586|gb|EEE81133.1|
predicted protein [Populus trichocarpa]
Length = 933
Score = 98.2 bits (243), Expect(2) = 2e-24
Identities = 46/79 (58%), Positives = 59/79 (74%)
Frame = +2
Query: 266 IGECMKVFEEIPESDVFAWTMMISSYVRVGGMDSAQRLFEEMLDRNVATWNTMFAGYVRL 445
I E ++VF+E+PE DVFAWT M+S VRVG M SA RLF+ M DRN+ATWNT+ GY RL
Sbjct: 131 IEESVRVFDEMPERDVFAWTTMVSGLVRVGDMSSAGRLFDMMPDRNLATWNTLIDGYARL 190
Query: 446 GNLESATTLCNQMPAKDLL 502
++ A L NQMPA+D++
Sbjct: 191 REVDVAELLFNQMPARDII 209
Score = 42.0 bits (97), Expect(2) = 2e-24
Identities = 20/55 (36%), Positives = 29/55 (52%)
Frame = +1
Query: 52 IQFCSPFRDVDFYLVMQNYRVSPSSFRFSSLPKDCILVSALGLGRSVRSQIWNRG 216
+Q P + ++ Y+ M VSP+S+ F SL K C LVS L +V +W G
Sbjct: 56 VQSYQPVQALELYVQMLRANVSPTSYTFPSLIKACGLVSQLRFAEAVHGHVWRNG 110
>ref|XP_003530855.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g06145-like [Glycine max]
Length = 529
Score = 100 bits (249), Expect(2) = 3e-23
Identities = 47/79 (59%), Positives = 61/79 (77%)
Frame = +2
Query: 266 IGECMKVFEEIPESDVFAWTMMISSYVRVGGMDSAQRLFEEMLDRNVATWNTMFAGYVRL 445
+G +VF+++PE DVFAWT MIS++VR G M SA RLF+EM ++NVATWN M GY +L
Sbjct: 127 VGGSRRVFDDMPERDVFAWTTMISAHVRDGDMASAGRLFDEMPEKNVATWNAMIDGYGKL 186
Query: 446 GNLESATTLCNQMPAKDLL 502
GN ESA L NQMPA+D++
Sbjct: 187 GNAESAEFLFNQMPARDII 205
Score = 35.4 bits (80), Expect(2) = 3e-23
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +1
Query: 88 YLVMQNYRVSPSSFRFSSLPKDCILVSALGLGRSVRSQIWNRG 216
Y+ M V P+S+ FSSL K C L+ G +V +W G
Sbjct: 64 YMHMLRNNVMPTSYSFSSLIKACTLLVDSAFGEAVHGHVWKHG 106