BLASTX nr result
ID: Cimicifuga21_contig00008756
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cimicifuga21_contig00008756
(676 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAC62779.1| F11O4.2 [Arabidopsis thaliana] 62 1e-19
gb|AAF87143.1|AC002423_8 T23E23.16 [Arabidopsis thaliana] 86 4e-16
gb|AAC19278.1| T14P8.10 [Arabidopsis thaliana] gi|7269009|emb|CA... 87 1e-15
gb|AAC78274.1| putative reverse transcriptase [Arabidopsis thali... 87 1e-15
gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana] 78 5e-14
>gb|AAC62779.1| F11O4.2 [Arabidopsis thaliana]
Length = 382
Score = 62.4 bits (150), Expect(3) = 1e-19
Identities = 47/125 (37%), Positives = 64/125 (51%), Gaps = 1/125 (0%)
Frame = -1
Query: 373 HPRCFDPLITHLSFAYDLL-YSNYTLWSSINQCV*LFY*TFWSSSQPPQEFYTFWWRNRR 197
HPRC D +THLSFA DL+ +S+ + SS++Q + ++ Y F
Sbjct: 140 HPRCKDMGLTHLSFADDLMIFSDAGVPSSLSQEI--------------KDRYHF------ 179
Query: 196 GGQRICFTSKYEYSHPFHQILELPLTSSRLLVADCLSLVEKIKQKITSWTDKLLSYAGRL 17
+ H + L LPL + RL D SL+E+IK+KI SWT + LSYAGRL
Sbjct: 180 -----------DVGHLPVRYLGLPLVTKRLTSTDYRSLLEQIKKKIGSWTARYLSYAGRL 228
Query: 16 ILINS 2
LI S
Sbjct: 229 SLITS 233
Score = 58.5 bits (140), Expect(3) = 1e-19
Identities = 24/60 (40%), Positives = 41/60 (68%)
Frame = -2
Query: 585 LNFPIKVINWIQTCISVVNYSLVLNGNVEGFFARKRGLRQGDPLSPLLFVQAMEVCRKLI 406
++ P + ++WI C++ ++S+ +NG + G+F K GLRQG LSP LFV +M+V K++
Sbjct: 69 MDIPSEFVHWIMLCVTTASFSVQVNGELAGYFQSKCGLRQGCSLSPYLFVISMDVLAKML 128
Score = 21.2 bits (43), Expect(3) = 1e-19
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -3
Query: 653 RCTIKVDTMKAYDYVSREFV 594
R IK+D KA+D V F+
Sbjct: 43 RYAIKIDISKAFDSVQWSFL 62
>gb|AAF87143.1|AC002423_8 T23E23.16 [Arabidopsis thaliana]
Length = 653
Score = 86.3 bits (212), Expect(2) = 4e-16
Identities = 55/163 (33%), Positives = 84/163 (51%), Gaps = 7/163 (4%)
Frame = -2
Query: 585 LNFPIKVINWIQTCISVVNYSLVLNGNVEGFFARKRGLRQGDPLSPLLFVQAMEVCRKLI 406
++FP++ ++WI CIS ++S+ +NG + GFF KRGLRQG LSP LFV +M+V KL+
Sbjct: 146 MDFPMEFVHWIMLCISTASFSVQVNGELVGFFQSKRGLRQGCSLSPYLFVMSMDVLSKLL 205
Query: 405 KNNTF*AIS------HPTLDALTL-*LPIYPLLMIFCTPTIPSGQALTSAFSSFTKLSGL 247
A S H L+L L LM+ + S + F F K SGL
Sbjct: 206 DQ----AASAKKFGYHSRCKELSLTHLSFADDLMVLSDGKVRSIDGIVEVFDIFAKFSGL 261
Query: 246 QANPLKSSILFGGGTEEEDNEFVSLLNMNIVTPSIKYWSFPLL 118
+ + KS+I G TE+ +E + ++ ++Y PL+
Sbjct: 262 KISMEKSTIYLAGVTEDVYHEIQNRYQFDVGQLPVRYLGLPLV 304
Score = 24.3 bits (51), Expect(2) = 4e-16
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -3
Query: 653 RCTIKVDTMKAYDYVSREFV 594
RC IK+D KA++ V F+
Sbjct: 120 RCAIKIDISKAFNSVQWSFI 139
>gb|AAC19278.1| T14P8.10 [Arabidopsis thaliana] gi|7269009|emb|CAB80742.1|
AT4g02490 [Arabidopsis thaliana]
Length = 657
Score = 86.7 bits (213), Expect(2) = 1e-15
Identities = 53/161 (32%), Positives = 82/161 (50%), Gaps = 3/161 (1%)
Frame = -2
Query: 585 LNFPIKVINWIQTCISVVNYSLVLNGNVEGFFARKRGLRQGDPLSPLLFVQAMEVCRKLI 406
LN P INWI CIS +YS+ NG + GFF K+G+RQGDP+S LFV M++ + +
Sbjct: 160 LNLPPIFINWIWVCISTPSYSIAYNGELIGFFVGKKGIRQGDPMSSHLFVLVMDILARSL 219
Query: 405 KNNTF*A--ISHP-TLDALTL*LPIYPLLMIFCTPTIPSGQALTSAFSSFTKLSGLQANP 235
+ HP L + L +++FC ++ S A+ F K SGL N
Sbjct: 220 DLGAVEGRFVLHPKCLAPMITHLSFADDILVFCDGSLSSLVAILDILDVFKKGSGLGINL 279
Query: 234 LKSSILFGGGTEEEDNEFVSLLNMNIVTPSIKYWSFPLLLQ 112
K+++L GG E + + L ++ + ++Y PL+ Q
Sbjct: 280 QKTALLLDGGNFERNRIMAASLGVSQGSLPVRYLGVPLMSQ 320
Score = 22.3 bits (46), Expect(2) = 1e-15
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -3
Query: 653 RCTIKVDTMKAYDYVSREFV 594
R ++VD KAYD V+ EF+
Sbjct: 134 RGCLQVDLTKAYDNVNWEFL 153
>gb|AAC78274.1| putative reverse transcriptase [Arabidopsis thaliana]
Length = 543
Score = 86.7 bits (213), Expect(2) = 1e-15
Identities = 53/161 (32%), Positives = 82/161 (50%), Gaps = 3/161 (1%)
Frame = -2
Query: 585 LNFPIKVINWIQTCISVVNYSLVLNGNVEGFFARKRGLRQGDPLSPLLFVQAMEVCRKLI 406
LN P INWI CIS +YS+ NG + GFF K+G+RQGDP+S LFV M++ + +
Sbjct: 160 LNLPPIFINWIWVCISTPSYSIAYNGELIGFFVGKKGIRQGDPMSSHLFVLVMDILARSL 219
Query: 405 KNNTF*A--ISHP-TLDALTL*LPIYPLLMIFCTPTIPSGQALTSAFSSFTKLSGLQANP 235
+ HP L + L +++FC ++ S A+ F K SGL N
Sbjct: 220 DLGAVEGRFVLHPKCLAPMITHLSFADDILVFCDGSLSSLVAILDILDVFKKGSGLGINL 279
Query: 234 LKSSILFGGGTEEEDNEFVSLLNMNIVTPSIKYWSFPLLLQ 112
K+++L GG E + + L ++ + ++Y PL+ Q
Sbjct: 280 QKTALLLDGGNFERNRIMAASLGVSQGSLPVRYLGVPLMSQ 320
Score = 22.3 bits (46), Expect(2) = 1e-15
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -3
Query: 653 RCTIKVDTMKAYDYVSREFV 594
R ++VD KAYD V+ EF+
Sbjct: 134 RGCLQVDLTKAYDNVNWEFL 153
>gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]
Length = 740
Score = 78.2 bits (191), Expect(2) = 5e-14
Identities = 56/163 (34%), Positives = 77/163 (47%), Gaps = 7/163 (4%)
Frame = -2
Query: 585 LNFPIKVINWIQTCISVVNYSLVLNGNVEGFFARKRGLRQGDPLSPLLFVQAMEVCRKLI 406
LNFP +WI+ CIS +S+ +NG + GFF KRGLRQG LSP LFV M V +I
Sbjct: 192 LNFPENFCHWIKLCISTATFSVQVNGELAGFFGSKRGLRQGCALSPYLFVICMNVLSHMI 251
Query: 405 ------KNNTF*AISHPTLDALTL-*LPIYPLLMIFCTPTIPSGQALTSAFSSFTKLSGL 247
+N + HP L+L L LM+F S + + + F F SGL
Sbjct: 252 DVAAVHRNIGY----HPKCKKLSLTHLCFADDLMVFIDGQQRSVEGVINIFKEFAGKSGL 307
Query: 246 QANPLKSSILFGGGTEEEDNEFVSLLNMNIVTPSIKYWSFPLL 118
+ KS++ G +E N +S ++Y PLL
Sbjct: 308 HISLEKSTLYLAGVSELNRNNILSAFPFASGQLPVRYLGLPLL 350
Score = 25.0 bits (53), Expect(2) = 5e-14
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -3
Query: 653 RCTIKVDTMKAYDYVSREFV 594
RC +K+D KA+D V +F+
Sbjct: 166 RCAMKIDISKAFDSVQWQFL 185