BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00008673
         (1159 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002276778.1| PREDICTED: pentatricopeptide repeat-containi...   370   e-100
ref|XP_002281924.1| PREDICTED: pentatricopeptide repeat-containi...   369   e-100
ref|XP_002314145.1| predicted protein [Populus trichocarpa] gi|2...   343   5e-92
ref|XP_002517255.1| conserved hypothetical protein [Ricinus comm...   342   8e-92
ref|XP_004145279.1| PREDICTED: pentatricopeptide repeat-containi...   340   3e-91

>ref|XP_002276778.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46870
           [Vitis vinifera] gi|297745785|emb|CBI15841.3| unnamed
           protein product [Vitis vinifera]
          Length = 252

 Score =  370 bits (950), Expect = e-100
 Identities = 183/254 (72%), Positives = 217/254 (85%), Gaps = 3/254 (1%)
 Frame = +3

Query: 21  MAIRALWKSKIPFFASTIVQNLI-IPFKESSSLVQLQNPNHQISPNQSIFRL--YHDGRP 191
           MAIRA  +SKIP F++ I+Q+LI  P KES+   + Q P  +++ N+ +F L  YHDGRP
Sbjct: 1   MAIRAFSRSKIPIFSAKILQSLIKSPIKEST---KFQFPVLEVASNKPLFGLKHYHDGRP 57

Query: 192 RGPLWRGKKMIGKEALFVILGLKRFKDDEEKLNKFIKTHVLRLLKMDIIAVLTELERQEE 371
           RGPLWRGKK+IGKEALFVILGLKRFKDDEEKL KFIK+HVLRLLKMD+IAVLTELERQEE
Sbjct: 58  RGPLWRGKKLIGKEALFVILGLKRFKDDEEKLRKFIKSHVLRLLKMDMIAVLTELERQEE 117

Query: 372 VSLALKIFSIIQKQDWYRPDVFLYKDLIIALSKSRKMEEAMKVWDAMRSEDLFPDCQTYS 551
           V+LA+++F + QKQDWY+PDV+LYKDLIIAL+K +KM+ AM++W++MR EDLFPD QTY+
Sbjct: 118 VTLAVEVFRVFQKQDWYKPDVYLYKDLIIALAKCKKMDNAMQLWESMRKEDLFPDYQTYT 177

Query: 552 EVIRGFLRYGSPADAMNIYEDMKKSPDPPEELPFRIXXXXXXXXXXXRNRVKEDFEEIFP 731
           EVIRGFLR+GSPADAMNIYEDMKKSPDPPEELPFRI           RNRVK+DFEEIFP
Sbjct: 178 EVIRGFLRHGSPADAMNIYEDMKKSPDPPEELPFRILLKGLLPHPLLRNRVKQDFEEIFP 237

Query: 732 DRHIYDPPEEIFGL 773
           DRH+YDPPEEIFG+
Sbjct: 238 DRHVYDPPEEIFGI 251


>ref|XP_002281924.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46870
           isoform 1 [Vitis vinifera]
           gi|359478900|ref|XP_003632183.1| PREDICTED:
           pentatricopeptide repeat-containing protein At3g46870
           isoform 2 [Vitis vinifera] gi|297745987|emb|CBI16043.3|
           unnamed protein product [Vitis vinifera]
          Length = 252

 Score =  369 bits (948), Expect = e-100
 Identities = 182/254 (71%), Positives = 216/254 (85%), Gaps = 3/254 (1%)
 Frame = +3

Query: 21  MAIRALWKSKIPFFASTIVQNLI-IPFKESSSLVQLQNPNHQISPNQSIF--RLYHDGRP 191
           MAIRA  +SKIP F++ I+QNLI  P KES+   + Q P  ++   + +   +LYHDGRP
Sbjct: 1   MAIRAFSRSKIPIFSAKILQNLIKAPIKEST---RFQFPVLEVGSYKPLLGSKLYHDGRP 57

Query: 192 RGPLWRGKKMIGKEALFVILGLKRFKDDEEKLNKFIKTHVLRLLKMDIIAVLTELERQEE 371
           RGPLWRGKK+IGKEALFVILGLKRFKDDEE L KFIK+HVLRLLKMD++AVLTELERQEE
Sbjct: 58  RGPLWRGKKLIGKEALFVILGLKRFKDDEENLRKFIKSHVLRLLKMDMVAVLTELERQEE 117

Query: 372 VSLALKIFSIIQKQDWYRPDVFLYKDLIIALSKSRKMEEAMKVWDAMRSEDLFPDCQTYS 551
           VSLA+++F +I+KQDWY+PDV+LYKDLIIAL+K +KM++AM++W++MR EDLFPD QTY+
Sbjct: 118 VSLAVEVFRVIRKQDWYKPDVYLYKDLIIALAKCKKMDDAMQLWESMRKEDLFPDYQTYT 177

Query: 552 EVIRGFLRYGSPADAMNIYEDMKKSPDPPEELPFRIXXXXXXXXXXXRNRVKEDFEEIFP 731
           EVIRGFLRYGSPADAMNIYEDMKKSPDPPEELPFRI           RNRVK+DFEEIFP
Sbjct: 178 EVIRGFLRYGSPADAMNIYEDMKKSPDPPEELPFRILLKGLLPHPLLRNRVKQDFEEIFP 237

Query: 732 DRHIYDPPEEIFGL 773
           DRH+YDPPEEIFG+
Sbjct: 238 DRHVYDPPEEIFGV 251


>ref|XP_002314145.1| predicted protein [Populus trichocarpa] gi|222850553|gb|EEE88100.1|
           predicted protein [Populus trichocarpa]
          Length = 257

 Score =  343 bits (880), Expect = 5e-92
 Identities = 178/259 (68%), Positives = 208/259 (80%), Gaps = 8/259 (3%)
 Frame = +3

Query: 21  MAIRALWKSKIPFFASTIV--QNLIIPFKESSSLVQLQNPNHQISPNQSIF-----RLYH 179
           M  RAL +SKIP F+S IV  QNL     + S + Q Q P  + S  QS       R YH
Sbjct: 1   MLTRALSRSKIPNFSSIIVILQNLTT---KQSIIDQTQLPLSKASNIQSFLVPAGLRQYH 57

Query: 180 DGRPRGPLWRGKKMIGKEALFVILGLKRFK-DDEEKLNKFIKTHVLRLLKMDIIAVLTEL 356
           DGRPRGPLWRGKK+IGKEALFVILGLKRFK DD+EKL++FIKTHV RLLK+D+IAVL+EL
Sbjct: 58  DGRPRGPLWRGKKLIGKEALFVILGLKRFKNDDDEKLDRFIKTHVFRLLKLDMIAVLSEL 117

Query: 357 ERQEEVSLALKIFSIIQKQDWYRPDVFLYKDLIIALSKSRKMEEAMKVWDAMRSEDLFPD 536
           ERQEEVSLA+KIF +IQKQDWY+PDV+LYKDLI+AL K+ KMEEAMK+W+ MR+EDLFPD
Sbjct: 118 ERQEEVSLAVKIFRVIQKQDWYKPDVYLYKDLIMALLKTGKMEEAMKLWEDMRNEDLFPD 177

Query: 537 CQTYSEVIRGFLRYGSPADAMNIYEDMKKSPDPPEELPFRIXXXXXXXXXXXRNRVKEDF 716
            Q Y+E IRG+LR GSPADAMNIYEDMKKSPDPPEELPFRI           RNRVK+D+
Sbjct: 178 SQMYTEAIRGYLRDGSPADAMNIYEDMKKSPDPPEELPFRILLKGLLPHPLLRNRVKQDY 237

Query: 717 EEIFPDRHIYDPPEEIFGL 773
           EE+FP++H+YDPPEEIFG+
Sbjct: 238 EELFPEKHVYDPPEEIFGI 256


>ref|XP_002517255.1| conserved hypothetical protein [Ricinus communis]
           gi|223543626|gb|EEF45155.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 258

 Score =  342 bits (878), Expect = 8e-92
 Identities = 176/254 (69%), Positives = 205/254 (80%), Gaps = 9/254 (3%)
 Frame = +3

Query: 42  KSKIPFFASTIVQNLII-PFKE------SSSLVQLQNPN-HQISPNQ-SIFRLYHDGRPR 194
           +S+I   +  ++QNL   P K+      S +L  L   N H  S N  S  R YHDGRPR
Sbjct: 5   RSRIAKLSVVLLQNLTNKPIKQTQLPPNSQALFDLNILNKHNHSHNSFSGLRQYHDGRPR 64

Query: 195 GPLWRGKKMIGKEALFVILGLKRFKDDEEKLNKFIKTHVLRLLKMDIIAVLTELERQEEV 374
           GPLWRGKK+IGKEALFVILGLKRFKD+EEKL+KFIKTHVLRLLKMD+IAVLTELERQEEV
Sbjct: 65  GPLWRGKKLIGKEALFVILGLKRFKDEEEKLDKFIKTHVLRLLKMDMIAVLTELERQEEV 124

Query: 375 SLALKIFSIIQKQDWYRPDVFLYKDLIIALSKSRKMEEAMKVWDAMRSEDLFPDCQTYSE 554
           SLA K+F IIQKQDWY PDV+LYKDLIIAL++S KM++AMK+W+AMRSE+LFPD Q Y+E
Sbjct: 125 SLATKVFQIIQKQDWYNPDVYLYKDLIIALTRSGKMDQAMKLWEAMRSENLFPDSQMYTE 184

Query: 555 VIRGFLRYGSPADAMNIYEDMKKSPDPPEELPFRIXXXXXXXXXXXRNRVKEDFEEIFPD 734
           +IRGFLR GSP DAMNIYEDMKKSPDPPEELPFRI           RNRVK+D+EE+FP+
Sbjct: 185 LIRGFLRDGSPGDAMNIYEDMKKSPDPPEELPFRILLKGLLPHPLLRNRVKQDYEELFPE 244

Query: 735 RHIYDPPEEIFGLR 776
           +H+YDPPEEIFG+R
Sbjct: 245 KHVYDPPEEIFGVR 258


>ref|XP_004145279.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g46870-like [Cucumis sativus]
           gi|449475090|ref|XP_004154371.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At3g46870-like [Cucumis sativus]
           gi|449508514|ref|XP_004163333.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At3g46870-like [Cucumis sativus]
          Length = 255

 Score =  340 bits (873), Expect = 3e-91
 Identities = 166/255 (65%), Positives = 206/255 (80%), Gaps = 3/255 (1%)
 Frame = +3

Query: 21  MAIRALWKSKIPFFASTIVQNLII-PFKESSSLVQLQNPNHQISPNQSI--FRLYHDGRP 191
           MAIR   +SK+P FAS  +Q L   P ++    V+    + Q    + I  FRLYHDGRP
Sbjct: 1   MAIRWFSRSKLPVFASVFLQGLTRRPIRDVPLPVKSTITDFQPDSRRPIWGFRLYHDGRP 60

Query: 192 RGPLWRGKKMIGKEALFVILGLKRFKDDEEKLNKFIKTHVLRLLKMDIIAVLTELERQEE 371
           RGPLWR +K IGKEALFVI GLKRFK+DEEK  KF+K+HV RLLK+D++AVL ELERQEE
Sbjct: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKFEKFMKSHVSRLLKLDMVAVLGELERQEE 120

Query: 372 VSLALKIFSIIQKQDWYRPDVFLYKDLIIALSKSRKMEEAMKVWDAMRSEDLFPDCQTYS 551
           V+LA+KIF +I+KQDWY+PDV++YKDLIIAL++S+KM++AMK+W++MR E+LFPD QTY+
Sbjct: 121 VALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYT 180

Query: 552 EVIRGFLRYGSPADAMNIYEDMKKSPDPPEELPFRIXXXXXXXXXXXRNRVKEDFEEIFP 731
           EVIRGFLRYGSP+DAMN+YEDMKKSPDPP+ELPFRI           RNRVK+DFEE+FP
Sbjct: 181 EVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP 240

Query: 732 DRHIYDPPEEIFGLR 776
           D+H++DPPEEIF LR
Sbjct: 241 DQHVFDPPEEIFSLR 255