BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00008660
         (1004 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003634352.1| PREDICTED: RNA pseudourine synthase 2, chlor...   491   e-137
emb|CAN66750.1| hypothetical protein VITISV_034413 [Vitis vinifera]   456   e-126
ref|NP_974151.1| RNA pseudourine synthase 2 [Arabidopsis thalian...   454   e-125
ref|XP_002301949.1| predicted protein [Populus trichocarpa] gi|2...   450   e-124
ref|XP_003523282.1| PREDICTED: RNA pseudourine synthase 2, chlor...   449   e-124

>ref|XP_003634352.1| PREDICTED: RNA pseudourine synthase 2, chloroplastic-like [Vitis
            vinifera] gi|302141717|emb|CBI18920.3| unnamed protein
            product [Vitis vinifera]
          Length = 433

 Score =  491 bits (1265), Expect = e-137
 Identities = 242/326 (74%), Positives = 276/326 (84%)
 Frame = +3

Query: 3    RIIDKVSHVIRAGDKVKCTISELQPLKAEPEDIPLDIVYEDAHVLLVNKPAHMVVHPAPG 182
            RI+DKVSHVIRAGDKV CTISELQPL+AEPEDIPLDIVYED HVL+VNKPAHMVVHPAPG
Sbjct: 109  RIVDKVSHVIRAGDKVNCTISELQPLRAEPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPG 168

Query: 183  NPNGTLVNGILHHCALPTIALQSDDILSESEDGSDVEFGGSLDDRNSSMEIGPNIIGSSV 362
            N +GTLVNGILHHC+LPT+AL + D  SE +D SD EF      +N           +++
Sbjct: 169  NASGTLVNGILHHCSLPTVALPNRD--SEEDDISDDEFNSFAAGQNCGT------CETNI 220

Query: 363  RPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKQHTIHRVYVSLTSGVPSTISERVDVPI 542
            RPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFK H+IHRVY+SLTSGVP+ +S RV++P+
Sbjct: 221  RPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHSIHRVYISLTSGVPTPLSGRVEIPV 280

Query: 543  GRDTNNRIRMAAIPGPNISRQVRHAASRYKVIEVLAGGGSALVEWRLETGRTHQIRAHAK 722
            GRD NNRIRM A+PGP+ S Q RHAASRYKVIE+LA GGSALVEWRLETGRTHQIRAHAK
Sbjct: 281  GRDPNNRIRMTAVPGPSNSGQARHAASRYKVIEILAAGGSALVEWRLETGRTHQIRAHAK 340

Query: 723  YLGIPLLGDELYGGTKSMALSLLQPRIAPSHRGDLAQLVSKFERPCLHALALGFKHPHTG 902
            YLGIPLLGDE+YGGTK+MALSLL+PRI  SH G LAQLVS+ +RPCLHA+ALGF HP TG
Sbjct: 341  YLGIPLLGDEVYGGTKNMALSLLRPRIPSSHHGQLAQLVSRLDRPCLHAVALGFNHPKTG 400

Query: 903  QRMQFSCPPPADFAHILTLLRKMGSK 980
            + + FSC PP DFA IL+ LRK+ ++
Sbjct: 401  KNVHFSCQPPEDFAEILSWLRKISTE 426


>emb|CAN66750.1| hypothetical protein VITISV_034413 [Vitis vinifera]
          Length = 611

 Score =  456 bits (1172), Expect = e-126
 Identities = 230/325 (70%), Positives = 264/325 (81%), Gaps = 2/325 (0%)
 Frame = +3

Query: 12   DKVSHVIRAGDKVKCTISELQPLKAEPEDIPLDIVYEDAHVLLVNKPAHMVVHPAPGNPN 191
            ++VSHVIRAGDKV CTISELQPL+AEPEDIPLDIVYED HV          VHPAPGN +
Sbjct: 268  EQVSHVIRAGDKVNCTISELQPLRAEPEDIPLDIVYEDEHV----------VHPAPGNAS 317

Query: 192  GTLVNGILHHCALPTIALQSDDILSESEDGSDVEFGGSLDDRNSSMEIGPNI--IGSSVR 365
            GTLVNGILHHC+LPT+AL + D  SE +D         LDD  +S   G N     +++R
Sbjct: 318  GTLVNGILHHCSLPTVALPNRD--SEEDD--------ILDDEFNSFAAGQNCGTCETNIR 367

Query: 366  PGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKQHTIHRVYVSLTSGVPSTISERVDVPIG 545
            PGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFK H+IHRVY+SLTSGVP+ +S RV++P+G
Sbjct: 368  PGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHSIHRVYISLTSGVPTPLSGRVEIPVG 427

Query: 546  RDTNNRIRMAAIPGPNISRQVRHAASRYKVIEVLAGGGSALVEWRLETGRTHQIRAHAKY 725
            RD NNRIRM A+PGP+ S Q RHAASRYKVIE+LA GGSALVEWRLETGRTHQIRAHAKY
Sbjct: 428  RDPNNRIRMTAVPGPSNSGQARHAASRYKVIEILAAGGSALVEWRLETGRTHQIRAHAKY 487

Query: 726  LGIPLLGDELYGGTKSMALSLLQPRIAPSHRGDLAQLVSKFERPCLHALALGFKHPHTGQ 905
            LGIPLLGDE+YGGTK+MALSLL+PRI  SH G LAQLVS+ +RPCLHA+ALGF HP TG+
Sbjct: 488  LGIPLLGDEVYGGTKNMALSLLRPRIPSSHHGQLAQLVSRLDRPCLHAVALGFNHPKTGK 547

Query: 906  RMQFSCPPPADFAHILTLLRKMGSK 980
             + FSC PP DFA IL+ LRK+ ++
Sbjct: 548  NVHFSCQPPEDFAEILSWLRKISTE 572


>ref|NP_974151.1| RNA pseudourine synthase 2 [Arabidopsis thaliana]
            gi|122215273|sp|Q3ECD0.1|PUS2_ARATH RecName: Full=RNA
            pseudourine synthase 2, chloroplastic; AltName: Full=RNA
            pseudouridylate synthase 2; AltName: Full=RNA-uridine
            isomerase 2; Flags: Precursor gi|332197669|gb|AEE35790.1|
            RNA pseudourine synthase 2 [Arabidopsis thaliana]
          Length = 430

 Score =  454 bits (1168), Expect = e-125
 Identities = 223/324 (68%), Positives = 266/324 (82%)
 Frame = +3

Query: 3    RIIDKVSHVIRAGDKVKCTISELQPLKAEPEDIPLDIVYEDAHVLLVNKPAHMVVHPAPG 182
            R++DKVSH +++GD+V CTISELQPLKAE EDIPLDIVYED HVL+VNKPAHMVVHPAPG
Sbjct: 114  RVVDKVSHNVKSGDEVNCTISELQPLKAEAEDIPLDIVYEDKHVLVVNKPAHMVVHPAPG 173

Query: 183  NPNGTLVNGILHHCALPTIALQSDDILSESEDGSDVEFGGSLDDRNSSMEIGPNIIGSSV 362
            NP GTLVNGILHHC+LP +   +    SE +D SD E   +  D +  M   P+   +SV
Sbjct: 174  NPTGTLVNGILHHCSLPCVDYSN----SEEDDDSDEE---TFSD-DEEMTTSPSSYAASV 225

Query: 363  RPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKQHTIHRVYVSLTSGVPSTISERVDVPI 542
            RPGIVHRLDKGT+GLLVVAKDEHSHAHL+EQFK HTI RVYVSLT+GVPS    R+++PI
Sbjct: 226  RPGIVHRLDKGTTGLLVVAKDEHSHAHLAEQFKLHTIERVYVSLTTGVPSPPQGRIEIPI 285

Query: 543  GRDTNNRIRMAAIPGPNISRQVRHAASRYKVIEVLAGGGSALVEWRLETGRTHQIRAHAK 722
            GRD++NRIRMAAIPG     + RHAASRYKVIE  AGGGSALVEWRLETGRTHQIRAHAK
Sbjct: 286  GRDSSNRIRMAAIPGGVRGGRARHAASRYKVIETFAGGGSALVEWRLETGRTHQIRAHAK 345

Query: 723  YLGIPLLGDELYGGTKSMALSLLQPRIAPSHRGDLAQLVSKFERPCLHALALGFKHPHTG 902
            Y+G+PLLGDE+YGGTKSMALSLLQ R++ S + ++ +L+S+ +RPCLHA+ LGF HP TG
Sbjct: 346  YMGVPLLGDEVYGGTKSMALSLLQKRVSRSDQEEIIELISRMDRPCLHAIVLGFTHPCTG 405

Query: 903  QRMQFSCPPPADFAHILTLLRKMG 974
            + ++FSCPPP+D A I+ LLR+ G
Sbjct: 406  EIVKFSCPPPSDLAEIVGLLRRSG 429


>ref|XP_002301949.1| predicted protein [Populus trichocarpa] gi|222843675|gb|EEE81222.1|
            predicted protein [Populus trichocarpa]
          Length = 444

 Score =  450 bits (1158), Expect = e-124
 Identities = 229/326 (70%), Positives = 266/326 (81%)
 Frame = +3

Query: 3    RIIDKVSHVIRAGDKVKCTISELQPLKAEPEDIPLDIVYEDAHVLLVNKPAHMVVHPAPG 182
            ++IDKVSH ++AGDKV C ISELQPL+AEPE+IPLDIVYED +VL+VNKPAHMVVHPAPG
Sbjct: 126  KVIDKVSHNVKAGDKVNCVISELQPLRAEPENIPLDIVYEDENVLVVNKPAHMVVHPAPG 185

Query: 183  NPNGTLVNGILHHCALPTIALQSDDILSESEDGSDVEFGGSLDDRNSSMEIGPNIIGSSV 362
            N  GTLVNGILHHC+LPT++  S ++LS +ED SD +  G          +  +   +SV
Sbjct: 186  NATGTLVNGILHHCSLPTVS--SQEVLSGAEDVSDDDDEG----------LCSSSYAASV 233

Query: 363  RPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKQHTIHRVYVSLTSGVPSTISERVDVPI 542
            RPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFK HTI RVYVSLT GVP+ ++ R+DVPI
Sbjct: 234  RPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIKRVYVSLTCGVPAPMAGRIDVPI 293

Query: 543  GRDTNNRIRMAAIPGPNISRQVRHAASRYKVIEVLAGGGSALVEWRLETGRTHQIRAHAK 722
            GRD +NRIRMAAI  PN   Q RHAASRYKVIE+LAGGGSALVEWRLETGRTHQIRAHAK
Sbjct: 294  GRDVSNRIRMAAIVEPNRG-QARHAASRYKVIEILAGGGSALVEWRLETGRTHQIRAHAK 352

Query: 723  YLGIPLLGDELYGGTKSMALSLLQPRIAPSHRGDLAQLVSKFERPCLHALALGFKHPHTG 902
            Y+GIPLLGDE+YGGT++MALSLL+ R  PS    L+  +S  ERPCLHALALGF HP TG
Sbjct: 353  YIGIPLLGDEVYGGTQNMALSLLRSRTQPSCHRQLSLSLSGLERPCLHALALGFTHPCTG 412

Query: 903  QRMQFSCPPPADFAHILTLLRKMGSK 980
            + + FSCPPP DF  IL+ LR+MG++
Sbjct: 413  KEIHFSCPPPPDFTEILSQLREMGTE 438


>ref|XP_003523282.1| PREDICTED: RNA pseudourine synthase 2, chloroplastic-like [Glycine
            max]
          Length = 450

 Score =  449 bits (1156), Expect = e-124
 Identities = 215/331 (64%), Positives = 267/331 (80%), Gaps = 5/331 (1%)
 Frame = +3

Query: 3    RIIDKVSHVIRAGDKVKCTISELQPLKAEPEDIPLDIVYEDAHVLLVNKPAHMVVHPAPG 182
            R++DKVS  +++GD++KCTI+ELQ L+A P++IPLDIVYED HVL++NKPAHMVVHPAPG
Sbjct: 114  RVVDKVSFNVKSGDEIKCTIAELQNLRAVPQNIPLDIVYEDEHVLVINKPAHMVVHPAPG 173

Query: 183  NPNGTLVNGILHHCALPTIALQSDDILSESEDGSD-----VEFGGSLDDRNSSMEIGPNI 347
            N +GTLVNGILHHC LP +    D+ LS++ED  D     +    S +  NS + +  N 
Sbjct: 174  NTSGTLVNGILHHCNLPNVEFSKDEALSDTEDSDDEFNSYISLASSCEGLNSRLSVASN- 232

Query: 348  IGSSVRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKQHTIHRVYVSLTSGVPSTISER 527
               S+RPGIVHRLDKGTSGLLVVAKDEHSH  LSEQFKQ TI R+YVSLT+GVP+ ++ R
Sbjct: 233  ---SIRPGIVHRLDKGTSGLLVVAKDEHSHMKLSEQFKQRTIKRLYVSLTAGVPTPVAGR 289

Query: 528  VDVPIGRDTNNRIRMAAIPGPNISRQVRHAASRYKVIEVLAGGGSALVEWRLETGRTHQI 707
            V+VP+GRDTNNRIRM A+ GP  S++ R+AASRYKVIE+LAGG  +LVEW+LETGRTHQI
Sbjct: 290  VEVPVGRDTNNRIRMTAVTGPVNSKKARYAASRYKVIEILAGGSCSLVEWKLETGRTHQI 349

Query: 708  RAHAKYLGIPLLGDELYGGTKSMALSLLQPRIAPSHRGDLAQLVSKFERPCLHALALGFK 887
            RAHAKYLG+PLLGDELYGGTKSM LSLL+PR   S    + ++VS+ +RPCLHA  LGF+
Sbjct: 350  RAHAKYLGVPLLGDELYGGTKSMVLSLLRPRTPISLHSKIVKMVSRLDRPCLHAWTLGFQ 409

Query: 888  HPHTGQRMQFSCPPPADFAHILTLLRKMGSK 980
            HPHTG+++ FSC PPADFA IL+ LR++GS+
Sbjct: 410  HPHTGEQVHFSCEPPADFAEILSQLRRIGSE 440