BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00008653
         (222 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003550712.1| PREDICTED: pentatricopeptide repeat-containi...    97   1e-22
ref|XP_004138087.1| PREDICTED: pentatricopeptide repeat-containi...    94   8e-21
ref|XP_002511313.1| pentatricopeptide repeat-containing protein,...    92   1e-20
ref|XP_002321639.1| predicted protein [Populus trichocarpa] gi|2...    96   6e-19
ref|XP_002877605.1| pentatricopeptide repeat-containing protein ...    96   2e-18

>ref|XP_003550712.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250,
           chloroplastic-like [Glycine max]
          Length = 635

 Score = 97.4 bits (241), Expect(2) = 1e-22
 Identities = 45/53 (84%), Positives = 47/53 (88%)
 Frame = +1

Query: 64  YDGIHRSLTSAGRFDEAEKILETMRNAGYEPDNITYSQVVFGLCKAGRLEEAC 222
           YDGIHRSLTSAG FDEAE I+ TMRNAGYEPDNITYSQ+VFGLCK  R EEAC
Sbjct: 374 YDGIHRSLTSAGNFDEAENIVRTMRNAGYEPDNITYSQMVFGLCKMRRFEEAC 426



 Score = 33.9 bits (76), Expect(2) = 1e-22
 Identities = 15/24 (62%), Positives = 19/24 (79%)
 Frame = +3

Query: 3   LNLVFRVVKKFEATGHTLXXX*WD 74
           L+LVFRV KK+E+TGHTL    +D
Sbjct: 352 LDLVFRVAKKYESTGHTLSKAIYD 375


>ref|XP_004138087.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250,
           chloroplastic-like [Cucumis sativus]
           gi|449524136|ref|XP_004169079.1| PREDICTED:
           pentatricopeptide repeat-containing protein At3g48250,
           chloroplastic-like [Cucumis sativus]
          Length = 632

 Score = 94.0 bits (232), Expect(2) = 8e-21
 Identities = 42/52 (80%), Positives = 49/52 (94%)
 Frame = +1

Query: 64  YDGIHRSLTSAGRFDEAEKILETMRNAGYEPDNITYSQVVFGLCKAGRLEEA 219
           YDGIHRSLTS G+FD+AE I+++MRNAGYEPDN+TYSQ+VFGLCKA RLEEA
Sbjct: 368 YDGIHRSLTSTGKFDDAENIVKSMRNAGYEPDNVTYSQLVFGLCKARRLEEA 419



 Score = 31.2 bits (69), Expect(2) = 8e-21
 Identities = 14/24 (58%), Positives = 19/24 (79%)
 Frame = +3

Query: 3   LNLVFRVVKKFEATGHTLXXX*WD 74
           L+LV+RV KKFEATG++L    +D
Sbjct: 346 LSLVYRVAKKFEATGYSLSKAMYD 369


>ref|XP_002511313.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223550428|gb|EEF51915.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 627

 Score = 92.0 bits (227), Expect(2) = 1e-20
 Identities = 42/53 (79%), Positives = 47/53 (88%)
 Frame = +1

Query: 64  YDGIHRSLTSAGRFDEAEKILETMRNAGYEPDNITYSQVVFGLCKAGRLEEAC 222
           YDGIHRSLTS G FDEA K+++ M+ AGYEPDNITYSQ+VFGLCKA RLEEAC
Sbjct: 373 YDGIHRSLTSIGNFDEAAKMMKCMQTAGYEPDNITYSQLVFGLCKARRLEEAC 425



 Score = 32.3 bits (72), Expect(2) = 1e-20
 Identities = 15/24 (62%), Positives = 19/24 (79%)
 Frame = +3

Query: 3   LNLVFRVVKKFEATGHTLXXX*WD 74
           LNLVFRVV K+EATG++L    +D
Sbjct: 351 LNLVFRVVNKYEATGNSLSKAVYD 374


>ref|XP_002321639.1| predicted protein [Populus trichocarpa] gi|222868635|gb|EEF05766.1|
           predicted protein [Populus trichocarpa]
          Length = 476

 Score = 96.3 bits (238), Expect(2) = 6e-19
 Identities = 43/53 (81%), Positives = 50/53 (94%)
 Frame = +1

Query: 64  YDGIHRSLTSAGRFDEAEKILETMRNAGYEPDNITYSQVVFGLCKAGRLEEAC 222
           YDG+HRS TSAG+FDEAEKI++ MR+AGYEPDNITYSQ+VFGLCK+ RLEEAC
Sbjct: 222 YDGMHRSFTSAGKFDEAEKIVKAMRDAGYEPDNITYSQLVFGLCKSKRLEEAC 274



 Score = 22.7 bits (47), Expect(2) = 6e-19
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +3

Query: 3   LNLVFRVVKKFEATGHTLXXX*WD 74
           L+LV RVV  ++ATG++L    +D
Sbjct: 200 LDLVSRVVDGYKATGNSLSKSVYD 223


>ref|XP_002877605.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297323443|gb|EFH53864.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 618

 Score = 96.3 bits (238), Expect = 2e-18
 Identities = 48/68 (70%), Positives = 54/68 (79%), Gaps = 2/68 (2%)
 Frame = +1

Query: 22  LSRSLKQPG--IPSXXYDGIHRSLTSAGRFDEAEKILETMRNAGYEPDNITYSQVVFGLC 195
           +SR  +  G  +    YDGIHRSLTS GRFDEAE+I + MRNAGYEPDNITYSQ+VFGLC
Sbjct: 354 VSRKYESTGKSLSKAVYDGIHRSLTSVGRFDEAEEITKAMRNAGYEPDNITYSQLVFGLC 413

Query: 196 KAGRLEEA 219
           KA RLEEA
Sbjct: 414 KAKRLEEA 421