BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00008652
         (1137 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002277390.1| PREDICTED: pentatricopeptide repeat-containi...   392   e-107
ref|XP_004138087.1| PREDICTED: pentatricopeptide repeat-containi...   391   e-106
ref|XP_003550712.1| PREDICTED: pentatricopeptide repeat-containi...   389   e-106
ref|XP_002511313.1| pentatricopeptide repeat-containing protein,...   380   e-103
ref|XP_003549820.1| PREDICTED: pentatricopeptide repeat-containi...   348   1e-93

>ref|XP_002277390.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250,
            chloroplastic-like [Vitis vinifera]
          Length = 631

 Score =  392 bits (1008), Expect = e-107
 Identities = 202/386 (52%), Positives = 268/386 (69%), Gaps = 8/386 (2%)
 Frame = +3

Query: 3    VLYVLKKLDRNPQKASDFFNWVSHKHGFKPSGTVYNLMLRILGNKDTMKEFWVLIKKMSN 182
            V+YVLKKLD++PQ+  +FFNWV+ K+GF+PS  +Y+L+LR L + ++MK+FWV I+KM  
Sbjct: 97   VIYVLKKLDKDPQRTWNFFNWVTEKNGFRPSSAMYSLILRSLVHGESMKQFWVTIRKMKE 156

Query: 183  --------TYLTILNNLNSSKMMTDVTSWTQVFTKVSKESATDATVKGVVDVVLGSDWND 338
                    TYLTIL      KM ++  + T  + ++ +E+A D  VK VV++V  S W+ 
Sbjct: 157  QGFCIDKETYLTILGVFKKGKMASEEVALTHFYNRMVQENAMDEVVKKVVELVTMSVWSS 216

Query: 339  DVKKKLGELKVTLSENIILKIFRALRLVPLKALEFFHWVEEHIGYKHKLLLIIAF*EFLV 518
            +V+KKLGELK + S+N +L + R LR  PLKAL FF WV E  GY+H  +        L 
Sbjct: 217  EVEKKLGELKNSFSDNFVLHVLRELRGYPLKALRFFQWVGECPGYEHSSITYNVIARVLG 276

Query: 519  RKNQLRSFXXXXXXXXXXXXYRY*YIIHILSSQGSSKREMMKDEVELFELMMDSPYKPSI 698
            R + +  F            +      +I  S+   K +M++D V+L+E+MMD PYKPS+
Sbjct: 277  RDDSIGEFWSMVEEMKSKG-HEMDIDTYIKISRQFQKNKMLEDAVKLYEIMMDGPYKPSV 335

Query: 699  SDCNSLLRRISLNNTPYLNLVFRVAKKYEATGHTLSKAVYDGVHRSLTSVGRFDEAEMIL 878
             DC  LLR ISL++ P L LVFRV +KYEA G++L KAVYDG+HRSLTSVGRFDEA  I+
Sbjct: 336  QDCTMLLRSISLSSNPDLALVFRVTEKYEAVGNSLCKAVYDGIHRSLTSVGRFDEAGKIM 395

Query: 879  GTMRNAGYEPDNITYSQVVFGLCKVGRLEEACKVLDEMDAQGCVPDIKTWTILIQGHCTA 1058
             +MR+AG EPDNITYSQ+V+GLCK  +LEEACK+LDEM+A GCVPDIKTWTILIQGHC A
Sbjct: 396  ESMRSAGCEPDNITYSQLVYGLCKARKLEEACKLLDEMEACGCVPDIKTWTILIQGHCAA 455

Query: 1059 GEIDQALKFFTKILEKNFEADADLLE 1136
             E+D+AL  F K++EKN +ADADLLE
Sbjct: 456  KEVDKALICFAKMMEKNCDADADLLE 481


>ref|XP_004138087.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250,
            chloroplastic-like [Cucumis sativus]
            gi|449524136|ref|XP_004169079.1| PREDICTED:
            pentatricopeptide repeat-containing protein At3g48250,
            chloroplastic-like [Cucumis sativus]
          Length = 632

 Score =  391 bits (1004), Expect = e-106
 Identities = 198/386 (51%), Positives = 267/386 (69%), Gaps = 8/386 (2%)
 Frame = +3

Query: 3    VLYVLKKLDRNPQKASDFFNWVSHKHGFKPSGTVYNLMLRILGNKDTMKEFWVLIKKMSN 182
            V+YVLK+LD+ PQKAS+FFNW S K+G   S ++Y+++LRI    ++MK FW+ ++ M  
Sbjct: 90   VVYVLKRLDKQPQKASEFFNWASGKNGSTQSSSIYSMLLRIFVQNESMKLFWITLRLMKE 149

Query: 183  --------TYLTILNNLNSSKMMTDVTSWTQVFTKVSKESATDATVKGVVDVVLGSDWND 338
                    TY TIL  L  SK   D T  T  + ++ +++A D+ V+ VVD+VLGSDW++
Sbjct: 150  RGFYLDEETYKTILGVLRKSKKAADATGLTHFYNRMLQQNAMDSVVQKVVDIVLGSDWSN 209

Query: 339  DVKKKLGELKVTLSENIILKIFRALRLVPLKALEFFHWVEEHIGYKHKLLLIIAF*EFLV 518
            DV  KL EL + LS+N ++++ + LR  PLKAL FFHWV     Y H  +   A    L 
Sbjct: 210  DVPGKLEELGIALSDNFVIRVLKELRNSPLKALSFFHWVGCRPDYDHNTVSYNAIARVLG 269

Query: 519  RKNQLRSFXXXXXXXXXXXXYRY*YIIHILSSQGSSKREMMKDEVELFELMMDSPYKPSI 698
            R + + +F            +      +I  S+   K +MM + V+L+ELMMD PYKPS+
Sbjct: 270  RDDSIEAFWGVIEEMKHAN-HEIDIDTYIKISRQFQKSKMMGEAVKLYELMMDGPYKPSL 328

Query: 699  SDCNSLLRRISLNNTPYLNLVFRVAKKYEATGHTLSKAVYDGVHRSLTSVGRFDEAEMIL 878
             DC+ LLR I+ ++ P L+LV+RVAKK+EATG++LSKA+YDG+HRSLTS G+FD+AE I+
Sbjct: 329  QDCSVLLRTIAASDNPDLSLVYRVAKKFEATGYSLSKAMYDGIHRSLTSTGKFDDAENIV 388

Query: 879  GTMRNAGYEPDNITYSQVVFGLCKVGRLEEACKVLDEMDAQGCVPDIKTWTILIQGHCTA 1058
             +MRNAGYEPDN+TYSQ+VFGLCK  RLEEA KVLDEM+AQGC+PDIKTWTILIQGHC A
Sbjct: 389  KSMRNAGYEPDNVTYSQLVFGLCKARRLEEARKVLDEMEAQGCIPDIKTWTILIQGHCNA 448

Query: 1059 GEIDQALKFFTKILEKNFEADADLLE 1136
             E+D AL  F K++EKN + DADLL+
Sbjct: 449  NELDIALVCFAKMIEKNCDPDADLLD 474


>ref|XP_003550712.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250,
            chloroplastic-like [Glycine max]
          Length = 635

 Score =  389 bits (998), Expect = e-106
 Identities = 194/386 (50%), Positives = 263/386 (68%), Gaps = 8/386 (2%)
 Frame = +3

Query: 3    VLYVLKKLDRNPQKASDFFNWVSHKHGFKPSGTVYNLMLRILGNKDTMKEFWVLIKKMSN 182
            VLYV+K+LD+NP+KAS FFNWV  K  F+PS +VY+L++RIL  KDTMK+FWV ++ M  
Sbjct: 96   VLYVIKRLDKNPEKASCFFNWVCKKVWFRPSCSVYSLIVRILAAKDTMKQFWVTLRMMKE 155

Query: 183  --------TYLTILNNLNSSKMMTDVTSWTQVFTKVSKESATDATVKGVVDVVLGSDWND 338
                    TYLTI       KM +D  + T  + ++ +E+A  + V  VV ++  S+W D
Sbjct: 156  NGFFLDEETYLTISVGFKREKMDSDSVALTHFYNRMLEENAMQSVVSNVVGIISRSEWGD 215

Query: 339  DVKKKLGELKVTLSENIILKIFRALRLVPLKALEFFHWVEEHIGYKHKLLLIIAF*EFLV 518
            +V  +L +L++ LS+N ++++ + LR  PLKA +FFHWV +  GY+H  +   A    L 
Sbjct: 216  EVVGELAKLEIQLSDNFVIRVLKELRKTPLKAYKFFHWVGKQSGYEHDTVTYNAVARVLP 275

Query: 519  RKNQLRSFXXXXXXXXXXXXYRY*YIIHILSSQGSSKREMMKDEVELFELMMDSPYKPSI 698
            R   +  F            +      +I  ++   +  MM+D V+L+ELMMD   KP +
Sbjct: 276  RAESIEEFWSVIEEMKRVG-HELDIDTYIKITRQLQRNRMMEDAVKLYELMMDGSCKPLV 334

Query: 699  SDCNSLLRRISLNNTPYLNLVFRVAKKYEATGHTLSKAVYDGVHRSLTSVGRFDEAEMIL 878
             DCN LL+ IS N+ P L+LVFRVAKKYE+TGHTLSKA+YDG+HRSLTS G FDEAE I+
Sbjct: 335  QDCNMLLKSISANDKPNLDLVFRVAKKYESTGHTLSKAIYDGIHRSLTSAGNFDEAENIV 394

Query: 879  GTMRNAGYEPDNITYSQVVFGLCKVGRLEEACKVLDEMDAQGCVPDIKTWTILIQGHCTA 1058
             TMRNAGYEPDNITYSQ+VFGLCK+ R EEACKVL++M++  C+PDIKTWTILIQGHC+A
Sbjct: 395  RTMRNAGYEPDNITYSQMVFGLCKMRRFEEACKVLEDMESSRCIPDIKTWTILIQGHCSA 454

Query: 1059 GEIDQALKFFTKILEKNFEADADLLE 1136
             E+D+AL  F K++EK  + DADLL+
Sbjct: 455  NEVDKALLCFAKMIEKGCDPDADLLD 480


>ref|XP_002511313.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223550428|gb|EEF51915.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 627

 Score =  380 bits (975), Expect = e-103
 Identities = 191/385 (49%), Positives = 262/385 (68%), Gaps = 8/385 (2%)
 Frame = +3

Query: 3    VLYVLKKLDRNPQKASDFFNWVSHKHGFKPSGTVYNLMLRILGNKDTMKEFWVLIKKMSN 182
            V+YVLKKLD++P KA DFFNWV  ++GFKPS  +Y+LMLRIL  KD+MK FW+ ++KM  
Sbjct: 95   VIYVLKKLDKDPHKAWDFFNWVCDRNGFKPSSPLYSLMLRILVKKDSMKNFWITLRKMKE 154

Query: 183  --------TYLTILNNLNSSKMMTDVTSWTQVFTKVSKESATDATVKGVVDVVLGSDWND 338
                    TYLTIL      +M +D  ++   F ++ +E+A D+ VK VV VV  ++W++
Sbjct: 155  QGFYTDEETYLTILGVFRKERMDSDAVAFKHFFDRMVEENAMDSVVKNVVSVVSATEWSN 214

Query: 339  DVKKKLGELKVTLSENIILKIFRALRLVPLKALEFFHWVEEHIGYKHKLLLIIAF*EFLV 518
            +V+K+L  + + L++N ++++ + LR  PLKAL+FF+W  +   Y+   +   A    L 
Sbjct: 215  EVEKELEGMGILLTDNFVIRVLKELRNYPLKALQFFNWAGKCERYECNTITYNAIARVLG 274

Query: 519  RKNQLRSFXXXXXXXXXXXXYRY*YIIHILSSQGSSKREMMKDEVELFELMMDSPYKPSI 698
            R + +  F            +      +I  S+   K ++M D V+L+E MMD P+KPS+
Sbjct: 275  RDDSIGEFWSVVEEMKNAG-HEMDIDTYIKISRQFQKNKLMGDAVKLYEFMMDGPFKPSV 333

Query: 699  SDCNSLLRRISLNNTPYLNLVFRVAKKYEATGHTLSKAVYDGVHRSLTSVGRFDEAEMIL 878
             DC+ LLR IS +N P LNLVFRV  KYEATG++LSKAVYDG+HRSLTS+G FDEA  ++
Sbjct: 334  QDCSMLLRSISASNYPDLNLVFRVVNKYEATGNSLSKAVYDGIHRSLTSIGNFDEAAKMM 393

Query: 879  GTMRNAGYEPDNITYSQVVFGLCKVGRLEEACKVLDEMDAQGCVPDIKTWTILIQGHCTA 1058
              M+ AGYEPDNITYSQ+VFGLCK  RLEEAC+VLDEM+A GC+PDIKTWTILIQGHC A
Sbjct: 394  KCMQTAGYEPDNITYSQLVFGLCKARRLEEACEVLDEMEAHGCLPDIKTWTILIQGHCVA 453

Query: 1059 GEIDQALKFFTKILEKNFEADADLL 1133
             E+ +AL    K++EK+ + DADLL
Sbjct: 454  NEVGKALMCLAKMMEKHCDPDADLL 478


>ref|XP_003549820.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250,
            chloroplastic-like [Glycine max]
          Length = 635

 Score =  348 bits (894), Expect = 1e-93
 Identities = 172/385 (44%), Positives = 250/385 (64%), Gaps = 8/385 (2%)
 Frame = +3

Query: 3    VLYVLKKLDRNPQKASDFFNWVSHKHGFKPSGTVYNLMLRILGNKDTMKEFWVLIKKMSN 182
            V+YVLK+++ NP+KA  FFNWVS K  ++PS ++Y L+LR+L  ++T+K FW+ ++ M  
Sbjct: 100  VVYVLKRMEANPEKAWCFFNWVSAKEWYRPSSSLYGLILRVLATEETIKLFWITLRTMKT 159

Query: 183  T--------YLTILNNLNSSKMMTDVTSWTQVFTKVSKESATDATVKGVVDVVLGSDWND 338
                     Y  IL       M  D  S T+ +++  +E+A    V  VVD++ GS+W D
Sbjct: 160  KGFYFDEEMYFPILAGFKRKNMNKDRVSLTRFYSQGIQENAMQIVVTKVVDIISGSEWGD 219

Query: 339  DVKKKLGELKVTLSENIILKIFRALRLVPLKALEFFHWVEEHIGYKHKLLLIIAF*EFLV 518
            +V   L +L++ +S+N + ++ + LR  PLKA EFF+WV +  GY+H  +   A    L 
Sbjct: 220  EVMSNLAKLEIRMSDNFVTRVLKELRNCPLKAYEFFNWVGKQSGYEHDTVTYNAIARVLA 279

Query: 519  RKNQLRSFXXXXXXXXXXXXYRY*YIIHILSSQGSSKREMMKDEVELFELMMDSPYKPSI 698
              + +  F            +      +I  S+   K +MM+D V+L+EL MD  YKPS+
Sbjct: 280  STDSIEKFWSVIEEMKSVG-HELDIDTYIKISKKLQKNKMMEDAVKLYELTMDGSYKPSV 338

Query: 699  SDCNSLLRRISLNNTPYLNLVFRVAKKYEATGHTLSKAVYDGVHRSLTSVGRFDEAEMIL 878
             DC+ LL+ IS ++ P L+LVFRV+KKYE+T HTLSKA+YDG+HRSL+  G+ DEAE I+
Sbjct: 339  KDCSLLLKSISASDDPNLDLVFRVSKKYESTWHTLSKAIYDGIHRSLSGAGKLDEAESIV 398

Query: 879  GTMRNAGYEPDNITYSQVVFGLCKVGRLEEACKVLDEMDAQGCVPDIKTWTILIQGHCTA 1058
              MRNAGYEPDNITY+Q +FG CK+ +L+EACKVL+EM++ G +P+IKTWTILIQGHC A
Sbjct: 399  NHMRNAGYEPDNITYNQTIFGFCKMRKLDEACKVLEEMESCGFIPEIKTWTILIQGHCVA 458

Query: 1059 GEIDQALKFFTKILEKNFEADADLL 1133
             E+D+AL    +++EK   ADA +L
Sbjct: 459  NEVDRALLCLNRMIEKGCNADAAVL 483