BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00008371
         (1813 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002274904.1| PREDICTED: pentatricopeptide repeat-containi...   698   0.0  
emb|CAN74604.1| hypothetical protein VITISV_025315 [Vitis vinifera]   696   0.0  
ref|XP_002519315.1| pentatricopeptide repeat-containing protein,...   683   0.0  
ref|XP_004138596.1| PREDICTED: pentatricopeptide repeat-containi...   674   0.0  
ref|XP_002316075.1| predicted protein [Populus trichocarpa] gi|2...   669   0.0  

>ref|XP_002274904.1| PREDICTED: pentatricopeptide repeat-containing protein At3g06430,
            chloroplastic [Vitis vinifera]
          Length = 498

 Score =  698 bits (1802), Expect = 0.0
 Identities = 351/466 (75%), Positives = 385/466 (82%)
 Frame = +3

Query: 117  RVAFTSSSYVRAPSGPKRASSSSYVRAPSGTKRAPTPTRKRHWKEGEFPGVLDPSISRSP 296
            R AF S +  +  S P  +SSSS V             +KR WK+GEFPG    +  RS 
Sbjct: 42   RCAFASPARRKTSSTPSSSSSSSAVG------------KKRLWKQGEFPGT--SAEGRSR 87

Query: 297  RTPXXXXXXXXXXXXXXXGWVSTVTEALSDRIVKKQWEDALQVFESLKQQPFYQPKEGTY 476
            +TP                W +TV EALSD ++KKQW  AL+VFE L++QPFYQPKEGTY
Sbjct: 88   KTPIKNIKKKLDRKNDAKAWANTVAEALSDLVLKKQWLQALEVFEMLREQPFYQPKEGTY 147

Query: 477  MRLLVLLGKCGQPDRARKLFDEMVEECCEPTSELYTALLASYCRSNLVDEAFSVLNQMKT 656
            M+LLVLLGK GQP RA +LFD MVEE CEPT+ELYTALLASYCRSNL+DEAFS+LNQMKT
Sbjct: 148  MKLLVLLGKSGQPLRAHELFDTMVEEGCEPTTELYTALLASYCRSNLIDEAFSILNQMKT 207

Query: 657  LPRCQPDVFTYSTLIKACVDEARFELVDSLYEEMAERLITPNTVTQNIVLNGYGKAGKFD 836
            LPRCQPDVFTYSTL+KACVD +RFELV+SLYEEM  R ITPNTVTQNIVL+GYGKAGKFD
Sbjct: 208  LPRCQPDVFTYSTLLKACVDASRFELVESLYEEMDVRSITPNTVTQNIVLSGYGKAGKFD 267

Query: 837  QMEKVLSGMLESTTCKPDVWTMNTVLSVFGNKGQIEIMEKWYEKFRGFGIAPETRTFNIL 1016
            +MEKVLSGMLEST+ KPDVWTMNT+LS+FGNKGQIEIMEKWYEKFR FGI PETRTFNIL
Sbjct: 268  EMEKVLSGMLESTSSKPDVWTMNTILSLFGNKGQIEIMEKWYEKFRNFGIEPETRTFNIL 327

Query: 1017 IGAYGKKRMYDKMSSVMEFMRKLSFPWTTSTYNNVIEAFADAGDAKNMEYTFDQMRSERM 1196
            IGAYGKKRMYDKMSSVME+MRKL FPWTTSTYNNVIEAF+D GDAKNMEYTFDQMR+E M
Sbjct: 328  IGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFSDVGDAKNMEYTFDQMRAEGM 387

Query: 1197 KMDTKTFCYLISGYGNAGLFHKVVSSIQLAEKLEIPENTSFYNAVISACANAEDFMEMER 1376
            K DTKTFC LI GY NAGLFHKVVSS+QLA K EIPENTSFYNAVISACA AED +EMER
Sbjct: 388  KADTKTFCCLIRGYANAGLFHKVVSSVQLAGKFEIPENTSFYNAVISACAKAEDLIEMER 447

Query: 1377 VFKRMKDKHCAPDSTTYSIMVEAYRKEGMNDKIYDLEQEKLNMVAN 1514
            VF RMKDKHC PDSTTYSIMVEAY+KEGMNDKIYDLEQE+  MVA+
Sbjct: 448  VFNRMKDKHCQPDSTTYSIMVEAYKKEGMNDKIYDLEQERQRMVAD 493


>emb|CAN74604.1| hypothetical protein VITISV_025315 [Vitis vinifera]
          Length = 525

 Score =  696 bits (1795), Expect = 0.0
 Identities = 349/466 (74%), Positives = 384/466 (82%)
 Frame = +3

Query: 117  RVAFTSSSYVRAPSGPKRASSSSYVRAPSGTKRAPTPTRKRHWKEGEFPGVLDPSISRSP 296
            R AF S +  +  S P  +SSSS V             +KR WK+GEFPG    +  RS 
Sbjct: 42   RCAFASPARRKTSSTPSSSSSSSAVG------------KKRLWKQGEFPGT--SAEGRSR 87

Query: 297  RTPXXXXXXXXXXXXXXXGWVSTVTEALSDRIVKKQWEDALQVFESLKQQPFYQPKEGTY 476
            +TP                W +TV EALSD ++KKQW  AL+VFE L++QPFYQPKEGTY
Sbjct: 88   KTPIKNIKKKLDRKNDAKAWANTVAEALSDLVLKKQWLQALEVFEMLREQPFYQPKEGTY 147

Query: 477  MRLLVLLGKCGQPDRARKLFDEMVEECCEPTSELYTALLASYCRSNLVDEAFSVLNQMKT 656
            M+LLVLLGK GQP RA +LFD MVEE CEPT+ELYTALLASYCRSNL+DEAFS+LNQMKT
Sbjct: 148  MKLLVLLGKSGQPLRAHELFDTMVEEGCEPTTELYTALLASYCRSNLIDEAFSILNQMKT 207

Query: 657  LPRCQPDVFTYSTLIKACVDEARFELVDSLYEEMAERLITPNTVTQNIVLNGYGKAGKFD 836
            LPRCQPDVFTYSTL+KACVD +RFELV+SLYEEM  R ITPNTVTQNIVL+GYGKAGKFD
Sbjct: 208  LPRCQPDVFTYSTLLKACVDASRFELVESLYEEMDVRSITPNTVTQNIVLSGYGKAGKFD 267

Query: 837  QMEKVLSGMLESTTCKPDVWTMNTVLSVFGNKGQIEIMEKWYEKFRGFGIAPETRTFNIL 1016
            +MEKVLSGMLEST+ KPDVWTMNT+LS+FGNKGQIEIMEKWYEKFR FGI PETRTFNIL
Sbjct: 268  EMEKVLSGMLESTSSKPDVWTMNTILSLFGNKGQIEIMEKWYEKFRNFGIEPETRTFNIL 327

Query: 1017 IGAYGKKRMYDKMSSVMEFMRKLSFPWTTSTYNNVIEAFADAGDAKNMEYTFDQMRSERM 1196
            IGAYGKKRMYDKMSSVME+MRKL FPWTTSTYNNVIEAF+D GDAKNMEYTFDQMR+E M
Sbjct: 328  IGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFSDVGDAKNMEYTFDQMRAEGM 387

Query: 1197 KMDTKTFCYLISGYGNAGLFHKVVSSIQLAEKLEIPENTSFYNAVISACANAEDFMEMER 1376
            K DTKTFC LI GY NAGLFHKVVSS+QLA K EIPENTSFYNAVISACA AED +EMER
Sbjct: 388  KADTKTFCCLIRGYANAGLFHKVVSSVQLAGKFEIPENTSFYNAVISACAKAEDLIEMER 447

Query: 1377 VFKRMKDKHCAPDSTTYSIMVEAYRKEGMNDKIYDLEQEKLNMVAN 1514
            VF RMKDKHC PDSTTYSIMVEAY+KEGMNDKIYDLEQE+  M+ +
Sbjct: 448  VFNRMKDKHCQPDSTTYSIMVEAYKKEGMNDKIYDLEQERQRMMCS 493


>ref|XP_002519315.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223541630|gb|EEF43179.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 491

 Score =  683 bits (1762), Expect = 0.0
 Identities = 334/435 (76%), Positives = 373/435 (85%), Gaps = 2/435 (0%)
 Frame = +3

Query: 216  APTPT--RKRHWKEGEFPGVLDPSISRSPRTPXXXXXXXXXXXXXXXGWVSTVTEALSDR 389
            APT T  +K+HWK+GEFPG  + S  R  RTP                WV+TVTEALSDR
Sbjct: 47   APTSTSPKKKHWKQGEFPGFTETSPPR--RTPIKNIKKKLDRKNKAKAWVNTVTEALSDR 104

Query: 390  IVKKQWEDALQVFESLKQQPFYQPKEGTYMRLLVLLGKCGQPDRARKLFDEMVEECCEPT 569
            I+KKQW  AL+VFE LK+QPFY PKEGTYM+LLVLLG+ GQP RA +LFDEMVEE  EPT
Sbjct: 105  ILKKQWFQALEVFEMLKEQPFYHPKEGTYMKLLVLLGRTGQPQRAHQLFDEMVEEGIEPT 164

Query: 570  SELYTALLASYCRSNLVDEAFSVLNQMKTLPRCQPDVFTYSTLIKACVDEARFELVDSLY 749
            +ELYTALLA+YCR++L DEAFS+L QMKTLPRC PDV+TYSTL+KACVD +RFELV++LY
Sbjct: 165  AELYTALLAAYCRNHLTDEAFSILQQMKTLPRCLPDVYTYSTLLKACVDASRFELVEALY 224

Query: 750  EEMAERLITPNTVTQNIVLNGYGKAGKFDQMEKVLSGMLESTTCKPDVWTMNTVLSVFGN 929
            +EM ERLITPNTVTQNIVL+GYGKAG +DQME+VLSGMLEST CKPDVWTMN +LSVFGN
Sbjct: 225  QEMGERLITPNTVTQNIVLSGYGKAGMYDQMERVLSGMLESTECKPDVWTMNIILSVFGN 284

Query: 930  KGQIEIMEKWYEKFRGFGIAPETRTFNILIGAYGKKRMYDKMSSVMEFMRKLSFPWTTST 1109
            KGQI++MEKWYEKFR FGI PETRTFNILIGAYGKKRMYDKMSSVMEFMRKL FPWTTST
Sbjct: 285  KGQIDLMEKWYEKFRSFGIEPETRTFNILIGAYGKKRMYDKMSSVMEFMRKLQFPWTTST 344

Query: 1110 YNNVIEAFADAGDAKNMEYTFDQMRSERMKMDTKTFCYLISGYGNAGLFHKVVSSIQLAE 1289
            YNNVIEAFA AGD K+MEYTFDQMR+E MK DTKTFC LI+GY NAGLFHKV+SS+QLA 
Sbjct: 345  YNNVIEAFAVAGDVKHMEYTFDQMRAEGMKADTKTFCCLINGYANAGLFHKVISSVQLAT 404

Query: 1290 KLEIPENTSFYNAVISACANAEDFMEMERVFKRMKDKHCAPDSTTYSIMVEAYRKEGMND 1469
            K EIPENT+FYNA+ISACA AED MEMERVFKRMKD  C PDSTTYSIMVEAY++EGMND
Sbjct: 405  KFEIPENTTFYNAIISACAKAEDLMEMERVFKRMKDNQCQPDSTTYSIMVEAYKREGMND 464

Query: 1470 KIYDLEQEKLNMVAN 1514
            K+Y LEQEK  MVA+
Sbjct: 465  KVYYLEQEKQGMVAH 479


>ref|XP_004138596.1| PREDICTED: pentatricopeptide repeat-containing protein At3g06430,
            chloroplastic-like [Cucumis sativus]
            gi|449522692|ref|XP_004168360.1| PREDICTED:
            pentatricopeptide repeat-containing protein At3g06430,
            chloroplastic-like [Cucumis sativus]
          Length = 496

 Score =  674 bits (1739), Expect = 0.0
 Identities = 334/483 (69%), Positives = 385/483 (79%), Gaps = 8/483 (1%)
 Frame = +3

Query: 90   LPSSRVPLHRVAFTSSSYVRAPSGPKRASSSSYVRAP--SGTKRAPTPT------RKRHW 245
            LPSS    H   F    +V +        +S  VR    + T+++P P+      +KRHW
Sbjct: 11   LPSSVSFDHVSTFLFPIFVSSSCSSSSHPNSRIVRCAFAAPTRKSPVPSTSSSPAKKRHW 70

Query: 246  KEGEFPGVLDPSISRSPRTPXXXXXXXXXXXXXXXGWVSTVTEALSDRIVKKQWEDALQV 425
            K+GEFPG  + S  R  R P                W +TVTEALSD I  K+W  AL+V
Sbjct: 71   KQGEFPGTTETSTRR--RAPLKRVKKKLDRKNNAKAWANTVTEALSDHITNKRWLQALEV 128

Query: 426  FESLKQQPFYQPKEGTYMRLLVLLGKCGQPDRARKLFDEMVEECCEPTSELYTALLASYC 605
            FE L++QPFY+PKEGTYM+LLVLLG+ GQP RAR LFD MV+E CEPT ELYTALLA+YC
Sbjct: 129  FEMLREQPFYEPKEGTYMKLLVLLGRSGQPHRARLLFDTMVQERCEPTPELYTALLAAYC 188

Query: 606  RSNLVDEAFSVLNQMKTLPRCQPDVFTYSTLIKACVDEARFELVDSLYEEMAERLITPNT 785
            R+NL+D+AFS LN MKTLPRCQPDV+TYS LIKACVD++RFE+V+SLYEEMAERLITPNT
Sbjct: 189  RNNLIDDAFSTLNLMKTLPRCQPDVYTYSILIKACVDDSRFEIVESLYEEMAERLITPNT 248

Query: 786  VTQNIVLNGYGKAGKFDQMEKVLSGMLESTTCKPDVWTMNTVLSVFGNKGQIEIMEKWYE 965
            VTQNIVL+GYGK GK+DQMEKVL GMLESTTC+PDVWTMN +LSVFGNKG IE+ME+WYE
Sbjct: 249  VTQNIVLSGYGKIGKYDQMEKVLIGMLESTTCRPDVWTMNIILSVFGNKGHIEMMERWYE 308

Query: 966  KFRGFGIAPETRTFNILIGAYGKKRMYDKMSSVMEFMRKLSFPWTTSTYNNVIEAFADAG 1145
            KFR FGI PETRTFNILIGAYGKKRMYDKMSSVME+MRKL FPWTTSTYNNVIEAFAD G
Sbjct: 309  KFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFADVG 368

Query: 1146 DAKNMEYTFDQMRSERMKMDTKTFCYLISGYGNAGLFHKVVSSIQLAEKLEIPENTSFYN 1325
            DAKNMEYTF+QMR+E M+ DTKTFC LI+GY NAGLFHKV+ S++LA KLEIPENTSFYN
Sbjct: 369  DAKNMEYTFEQMRAEGMRADTKTFCCLINGYANAGLFHKVIGSVKLAGKLEIPENTSFYN 428

Query: 1326 AVISACANAEDFMEMERVFKRMKDKHCAPDSTTYSIMVEAYRKEGMNDKIYDLEQEKLNM 1505
            AVISACA AED MEM+RVFKRMKDKHC PD+ TYSIM+EAY KEGMND+++ LE EK  +
Sbjct: 429  AVISACAKAEDLMEMDRVFKRMKDKHCQPDNKTYSIMMEAYGKEGMNDRVHYLELEKKQV 488

Query: 1506 VAN 1514
            + N
Sbjct: 489  IDN 491


>ref|XP_002316075.1| predicted protein [Populus trichocarpa] gi|222865115|gb|EEF02246.1|
            predicted protein [Populus trichocarpa]
          Length = 434

 Score =  669 bits (1727), Expect = 0.0
 Identities = 319/426 (74%), Positives = 364/426 (85%)
 Frame = +3

Query: 231  RKRHWKEGEFPGVLDPSISRSPRTPXXXXXXXXXXXXXXXGWVSTVTEALSDRIVKKQWE 410
            +K+HWK+GEFPG  D S  R  RT                 WV+TV EAL+D ++KKQW 
Sbjct: 11   KKKHWKQGEFPGFTDAS--RPRRTAIKNIKKKLDRKSKAKAWVNTVAEALTDCVLKKQWL 68

Query: 411  DALQVFESLKQQPFYQPKEGTYMRLLVLLGKCGQPDRARKLFDEMVEECCEPTSELYTAL 590
             A+QVFE LK+QPFYQPKE TYM+LLVLLG+CGQP RA +LFDEMVEE  EPT+ELYTAL
Sbjct: 69   QAIQVFEMLKEQPFYQPKEATYMKLLVLLGRCGQPQRAHQLFDEMVEEGIEPTTELYTAL 128

Query: 591  LASYCRSNLVDEAFSVLNQMKTLPRCQPDVFTYSTLIKACVDEARFELVDSLYEEMAERL 770
            LA+YCR+NL+DE FS++NQMK+LPRCQPDV+TYSTL+KACVD +RFEL+D+LY+EM ERL
Sbjct: 129  LAAYCRNNLIDEGFSIINQMKSLPRCQPDVYTYSTLLKACVDASRFELIDTLYQEMDERL 188

Query: 771  ITPNTVTQNIVLNGYGKAGKFDQMEKVLSGMLESTTCKPDVWTMNTVLSVFGNKGQIEIM 950
            I+PNTVTQN+VL+GYG+ G +DQME+VLS MLES  CKPDVWTMN +LSVFGN+GQI++M
Sbjct: 189  ISPNTVTQNVVLSGYGRVGMYDQMERVLSEMLESAACKPDVWTMNIILSVFGNEGQIDLM 248

Query: 951  EKWYEKFRGFGIAPETRTFNILIGAYGKKRMYDKMSSVMEFMRKLSFPWTTSTYNNVIEA 1130
            E+WYEKFR FGI PETRTFNILIGAYGKKRMYDKMSSVME+MRK+ FPWTTSTYNNVIEA
Sbjct: 249  ERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKVQFPWTTSTYNNVIEA 308

Query: 1131 FADAGDAKNMEYTFDQMRSERMKMDTKTFCYLISGYGNAGLFHKVVSSIQLAEKLEIPEN 1310
            FAD GDAKNMEY FDQMR+E MK DTKTFC LI+GY NAGLFHKV+SS+QLA K EIPEN
Sbjct: 309  FADVGDAKNMEYAFDQMRAESMKADTKTFCCLINGYANAGLFHKVISSVQLAAKFEIPEN 368

Query: 1311 TSFYNAVISACANAEDFMEMERVFKRMKDKHCAPDSTTYSIMVEAYRKEGMNDKIYDLEQ 1490
            TSF+NAVISACA A+D MEMERVFKRMKDK C PDS TYSIMVEAYRKEGMNDKIY LEQ
Sbjct: 369  TSFFNAVISACAKADDLMEMERVFKRMKDKQCPPDSRTYSIMVEAYRKEGMNDKIYYLEQ 428

Query: 1491 EKLNMV 1508
            EK  M+
Sbjct: 429  EKQEMI 434