BLASTX nr result
ID: Cimicifuga21_contig00008281
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cimicifuga21_contig00008281
(1051 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002273904.1| PREDICTED: pentatricopeptide repeat-containi... 343 5e-92
emb|CAN73453.1| hypothetical protein VITISV_024964 [Vitis vinifera] 342 9e-92
ref|XP_002517926.1| pentatricopeptide repeat-containing protein,... 323 6e-86
ref|XP_004168984.1| PREDICTED: pentatricopeptide repeat-containi... 320 5e-85
ref|XP_002322749.1| predicted protein [Populus trichocarpa] gi|2... 305 1e-80
>ref|XP_002273904.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20710,
mitochondrial [Vitis vinifera]
Length = 499
Score = 343 bits (879), Expect = 5e-92
Identities = 172/325 (52%), Positives = 236/325 (72%)
Frame = -3
Query: 983 SASCRFSRALFYSTETPTSTTPKGKRDNIYWRICRQGDVRVSMVPILDQWIQEGHTVTRD 804
S+ R R L YSTET TS PK +++ RI D+RVS+VP L+QW +EG ++ +
Sbjct: 12 SSISRVFRVLPYSTETLTSNAPK---ESLQSRISPAIDLRVSIVPALEQWRKEGRSIKQQ 68
Query: 803 ELNFMVMKLKYFKRFKHALEISHWMSDQRNFFLSPSDFAVRLSLISKVHGIEQAEKYFGN 624
+L+ ++ KL+ FKR+ HALEI W+ D+ F +SP D A++L LISKVHG+EQAEKYF
Sbjct: 69 DLHRLIRKLRTFKRYNHALEIYEWIRDKFYFDISPGDVAIQLDLISKVHGLEQAEKYFNE 128
Query: 623 IPQRSRVFPVYCALLNCYTQNKLVEKAEPLMQQMRNLGFAWSPRAYNLMLILYSKVGQYE 444
P R F VY ALLNCY+Q K +EKAE +MQ+MR++GF +YN+ML LYS++G++E
Sbjct: 129 TPNSLRSFQVYGALLNCYSQKKSLEKAEAIMQEMRDMGFV-KTLSYNVMLGLYSRLGKHE 187
Query: 443 KFDILMEEMIEKVVVVDKFTVGIQLDAYAETSEIDGMEKILQRMEVNPDDTVDWNCYVIV 264
K D LM+EM E + +D FT I+L+AY TS+++GMEK+L ++E +P DWN Y++
Sbjct: 188 KLDNLMQEMEENGIGLDSFTYCIRLNAYCATSDMEGMEKLLMKLETDPAVNSDWNAYIVA 247
Query: 263 AKGYIKAGLIDKALEMLKKSEELISGRKRRVAYDILLTMYASAGSKEDLYRIWNLYKSSA 84
A GY+KA L +KA+EMLKKSE+ ISGR RR Y+ILLT+YA+ G+K ++YRIWNLYK+
Sbjct: 248 ANGYLKADLKEKAVEMLKKSEQFISGRSRRFGYEILLTLYATMGNKTEVYRIWNLYKTIG 307
Query: 83 KIYNAAYRSMISSLLKLDDIAGAEK 9
K +N Y +M+SSLLKLDD+ GAEK
Sbjct: 308 KFFNTGYVAMVSSLLKLDDMDGAEK 332
>emb|CAN73453.1| hypothetical protein VITISV_024964 [Vitis vinifera]
Length = 499
Score = 342 bits (877), Expect = 9e-92
Identities = 172/325 (52%), Positives = 235/325 (72%)
Frame = -3
Query: 983 SASCRFSRALFYSTETPTSTTPKGKRDNIYWRICRQGDVRVSMVPILDQWIQEGHTVTRD 804
S+ R R L YSTET TS PK +++ RI D+RVS+VP L+QW +EG ++ +
Sbjct: 12 SSISRVFRVLPYSTETLTSNAPK---ESLQSRISPAIDLRVSIVPALEQWRKEGRSIKQQ 68
Query: 803 ELNFMVMKLKYFKRFKHALEISHWMSDQRNFFLSPSDFAVRLSLISKVHGIEQAEKYFGN 624
+L+ ++ KL+ FKR+ HALEI W+ D+ F +SP D A++L LISKVHG+EQAEKYF
Sbjct: 69 DLHRLIRKLRTFKRYNHALEIYEWIRDKFYFDISPGDVAIQLDLISKVHGLEQAEKYFNE 128
Query: 623 IPQRSRVFPVYCALLNCYTQNKLVEKAEPLMQQMRNLGFAWSPRAYNLMLILYSKVGQYE 444
P R F VY ALLNCY+Q K +EKAE +MQ+MR++GF +YN+ML LYS++G++E
Sbjct: 129 TPNSLRSFQVYGALLNCYSQKKSLEKAEAIMQEMRDMGFV-KTLSYNVMLGLYSRLGKHE 187
Query: 443 KFDILMEEMIEKVVVVDKFTVGIQLDAYAETSEIDGMEKILQRMEVNPDDTVDWNCYVIV 264
K D LM+EM E + +D FT I+L+AY TS+++GMEK+L ++E +P DWN Y++
Sbjct: 188 KLDNLMQEMEENGIGLDSFTYCIRLNAYCATSDMEGMEKLLMKLETDPAVNSDWNAYIVA 247
Query: 263 AKGYIKAGLIDKALEMLKKSEELISGRKRRVAYDILLTMYASAGSKEDLYRIWNLYKSSA 84
A GY+KA L +KA+EMLKKSE+ ISGR RR Y+ILLT+YA+ G+K + YRIWNLYK+
Sbjct: 248 ANGYLKADLKEKAVEMLKKSEQFISGRSRRFGYEILLTLYATMGNKTEXYRIWNLYKTIG 307
Query: 83 KIYNAAYRSMISSLLKLDDIAGAEK 9
K +N Y +M+SSLLKLDD+ GAEK
Sbjct: 308 KFFNTGYVAMVSSLLKLDDMDGAEK 332
>ref|XP_002517926.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223542908|gb|EEF44444.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 504
Score = 323 bits (827), Expect = 6e-86
Identities = 166/333 (49%), Positives = 232/333 (69%)
Frame = -3
Query: 1004 GFKSLLRSASCRFSRALFYSTETPTSTTPKGKRDNIYWRICRQGDVRVSMVPILDQWIQE 825
G S L + + RA F ST T S + D +Y RI + G +S+VPIL++W++E
Sbjct: 7 GSNSNLWQSGYQILRAQFLSTST-YSLSSSAPIDTLYGRISKAGKPSISIVPILEKWLEE 65
Query: 824 GHTVTRDELNFMVMKLKYFKRFKHALEISHWMSDQRNFFLSPSDFAVRLSLISKVHGIEQ 645
G+ V + EL V +L+ ++RF HAL++S WM+D++ L P D AVRL LISKVHG+ +
Sbjct: 66 GNDVKKPELQKFVKQLRKYRRFTHALQVSEWMTDKKGCSLLPGDVAVRLDLISKVHGLVK 125
Query: 644 AEKYFGNIPQRSRVFPVYCALLNCYTQNKLVEKAEPLMQQMRNLGFAWSPRAYNLMLILY 465
AE+YF +IP SR VY ALLNC +KL+ KAE MQ+M++LGF + +YN+ML LY
Sbjct: 126 AEEYFNSIPDTSRDRQVYGALLNCCAHSKLLGKAEATMQKMKDLGFVKNSLSYNVMLSLY 185
Query: 464 SKVGQYEKFDILMEEMIEKVVVVDKFTVGIQLDAYAETSEIDGMEKILQRMEVNPDDTVD 285
S +G YEK D L++EM E + D+ T I+L+A +S+I+GMEK+L +MEV+P+ +V
Sbjct: 186 SHMGNYEKLDPLVQEMEENGISCDRITYCIRLNACVNSSDIEGMEKLLMKMEVDPNISVG 245
Query: 284 WNCYVIVAKGYIKAGLIDKALEMLKKSEELISGRKRRVAYDILLTMYASAGSKEDLYRIW 105
++ YVI A GY+KAGL+DK L MLK+SE+LISG RR AY+ LLT+Y ++G+K ++YRIW
Sbjct: 246 FHAYVIAANGYLKAGLVDKTLIMLKRSEQLISGNTRRFAYEFLLTLYTASGNKAEVYRIW 305
Query: 104 NLYKSSAKIYNAAYRSMISSLLKLDDIAGAEKI 6
N YK + +N+ Y MISSLLKLDDI GAE+I
Sbjct: 306 NKYKEIGRFFNSGYICMISSLLKLDDIDGAERI 338
>ref|XP_004168984.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20710,
mitochondrial-like [Cucumis sativus]
Length = 461
Score = 320 bits (819), Expect = 5e-85
Identities = 153/302 (50%), Positives = 219/302 (72%), Gaps = 1/302 (0%)
Frame = -3
Query: 908 RDNIYWRICRQGDVRVSMVPILDQWIQEGHTVTRDELNFMVMKLKYFKRFKHALEISHWM 729
+DN+Y RI GD +S+ P+LDQW+ EG V +DEL ++ +L+ +KRFKHALEIS WM
Sbjct: 28 KDNLYRRISPVGDPNISVTPLLDQWVLEGRLVQQDELRHIIKELRVYKRFKHALEISKWM 87
Query: 728 SDQRNFFLSPSDFAVRLSLISKVHGIEQAEKYFGNIPQRSRVFPVYCALLNCYTQNKLVE 549
SD+R F LS +D A+R++LI +VHG+EQ E YF N+P + + + V+ ALLNCY K V+
Sbjct: 88 SDKRYFPLSTADIAIRMNLILRVHGLEQVEDYFDNMPSQLKRYQVHIALLNCYAHEKCVD 147
Query: 548 KAEPLMQQMRNLGFAWSPRAYNLMLILYSKVGQYEKFDILMEEMIEKVVVVDKFTVGIQL 369
KA MQ+++ +GFA SP YN+M+ LY ++G++E+ D L++EM E+ V D+FT I++
Sbjct: 148 KANAFMQKIKEMGFANSPLPYNIMMNLYHQIGEFERLDSLLKEMKERGVYYDRFTYSIRI 207
Query: 368 DAYAETSEIDGMEKILQRMEVNPDDTVDWNCYVIVAKGYIKAGLIDKALEMLKKSEELIS 189
AYA S+ G+EKI+++ME NP +DWNCYVI A Y K GLIDK++ MLKKSE L++
Sbjct: 208 SAYAAASDFRGIEKIMEQMESNPSIVLDWNCYVIAANAYNKVGLIDKSISMLKKSEGLLA 267
Query: 188 G-RKRRVAYDILLTMYASAGSKEDLYRIWNLYKSSAKIYNAAYRSMISSLLKLDDIAGAE 12
+K+ A+++ L +YA G K++++RIWNLYK KI+N + SMI+SLL LDDI GAE
Sbjct: 268 NVKKKGFAFNVYLKLYARNGKKDEIHRIWNLYKKE-KIFNKGFISMITSLLILDDIKGAE 326
Query: 11 KI 6
+I
Sbjct: 327 RI 328
>ref|XP_002322749.1| predicted protein [Populus trichocarpa] gi|222867379|gb|EEF04510.1|
predicted protein [Populus trichocarpa]
Length = 505
Score = 305 bits (781), Expect = 1e-80
Identities = 159/318 (50%), Positives = 214/318 (67%), Gaps = 3/318 (0%)
Frame = -3
Query: 950 YSTETPTSTTPKGKRDN---IYWRICRQGDVRVSMVPILDQWIQEGHTVTRDELNFMVMK 780
YST TPT T K D +Y RI D R+++ L+ W+ EG V +++L + +
Sbjct: 42 YST-TPTGRTKKPWTDAMNVLYNRISSLADQRITISLFLNHWVLEGQPVNKNQLREFIKE 100
Query: 779 LKYFKRFKHALEISHWMSDQRNFFLSPSDFAVRLSLISKVHGIEQAEKYFGNIPQRSRVF 600
L++ KR+ HALEIS WM+D F L+ D AV+L LISKVHGIEQA+K F N PQ +V
Sbjct: 101 LRFHKRYAHALEISTWMTDSGYFELASQDVAVQLDLISKVHGIEQAQKLFNNTPQHLKVL 160
Query: 599 PVYCALLNCYTQNKLVEKAEPLMQQMRNLGFAWSPRAYNLMLILYSKVGQYEKFDILMEE 420
VY ALLNCY + KLVEKAE ++Q+M++LGFA + YN++L Y + G +K + LM+E
Sbjct: 161 KVYSALLNCYAKAKLVEKAESVVQEMKSLGFANTLLVYNVILNFYYQTGNPDKINSLMQE 220
Query: 419 MIEKVVVVDKFTVGIQLDAYAETSEIDGMEKILQRMEVNPDDTVDWNCYVIVAKGYIKAG 240
M + + DKF IQL AYA S+I G+EK L +ME +P+ +DW Y AKGYIK G
Sbjct: 221 MEQNGIGCDKFAHSIQLSAYASVSDIVGIEKTLAKMESDPNVFLDWTSYTAAAKGYIKVG 280
Query: 239 LIDKALEMLKKSEELISGRKRRVAYDILLTMYASAGSKEDLYRIWNLYKSSAKIYNAAYR 60
L+DKALEML+KSE L++G++R AYD L+T+YA+ G ++ RIW LYK + K+Y AY
Sbjct: 281 LVDKALEMLEKSERLVTGKRRGTAYDSLITLYAATGKTNEVLRIWELYKKNEKVYKEAYI 340
Query: 59 SMISSLLKLDDIAGAEKI 6
S+I+SLLKLDD AEKI
Sbjct: 341 SIITSLLKLDDFENAEKI 358