BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00008231
         (1543 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002520330.1| replication factor C / DNA polymerase III ga...   583   e-164
ref|XP_002285874.1| PREDICTED: replication factor C subunit 4 is...   583   e-164
emb|CAN83520.1| hypothetical protein VITISV_019805 [Vitis vinifera]   581   e-163
ref|XP_002307456.1| predicted protein [Populus trichocarpa] gi|2...   573   e-161
ref|XP_003634411.1| PREDICTED: replication factor C subunit 4 [V...   563   e-158

>ref|XP_002520330.1| replication factor C / DNA polymerase III gamma-tau subunit, putative
            [Ricinus communis] gi|223540549|gb|EEF42116.1|
            replication factor C / DNA polymerase III gamma-tau
            subunit, putative [Ricinus communis]
          Length = 342

 Score =  583 bits (1504), Expect = e-164
 Identities = 292/370 (78%), Positives = 321/370 (86%)
 Frame = +3

Query: 195  MAPVLQSTQPWVEKYRPRQVKDVAHQDEVIRVLTNTLETTNCPHMLFYGPPXXXXXXXXX 374
            MAP+LQS+QPWVEKYRP+QVKDVAHQ+EV+RVLTNTLET+NCPHMLFYG           
Sbjct: 1    MAPILQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETSNCPHMLFYG----------- 49

Query: 375  XXXXXXXXXXXXXXXXFYGPPGTGKTTTALAICHQLFGPELYKARVLELNASDDRGINVV 554
                               PPGTGKTTTALAI HQLFGPELYK+RVLELNASDDRGINVV
Sbjct: 50   -------------------PPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVV 90

Query: 555  RTKIKDFAAVAVGTRGRQGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFF 734
            RTKIK+FAAVAVG+  R GGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFF
Sbjct: 91   RTKIKNFAAVAVGSGQRAGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFF 150

Query: 735  ICNYISRIIEPLASRCAKFRFKPLSEDIMTSRILHICNEEGLNLDPEALSTLSFISQGDL 914
            +CNYISRIIEPLASRCAKFRFKPLSE+IM+SR+LHIC EEGLNLD EALSTLS++SQGDL
Sbjct: 151  LCNYISRIIEPLASRCAKFRFKPLSEEIMSSRVLHICREEGLNLDAEALSTLSYVSQGDL 210

Query: 915  RRAITHLQGAARLFGSSISAKELISVSGVIPHAVVEALFTACKSGDFEKANKEVTNVIAE 1094
            RRAIT+LQGAARL+GS+IS+K+LISVSGVIP   V AL+ AC+SGDF+ ANKEV N+IAE
Sbjct: 211  RRAITYLQGAARLYGSTISSKDLISVSGVIPQEAVGALYAACRSGDFDMANKEVNNIIAE 270

Query: 1095 GYPVSQMLSQLLEVVVEANDITDEMKARICSKLGEADKCLIDGADEYLQLMDVASNTMRA 1274
            GYPVSQML QLLEVVVEA+DI+DE KA+IC  LG ADKCL+DGADEYLQL+DVASNTMRA
Sbjct: 271  GYPVSQMLVQLLEVVVEADDISDEQKAQICKSLGAADKCLVDGADEYLQLLDVASNTMRA 330

Query: 1275 LCNMPQEFSY 1304
            LCNMPQEF Y
Sbjct: 331  LCNMPQEFPY 340


>ref|XP_002285874.1| PREDICTED: replication factor C subunit 4 isoform 1 [Vitis vinifera]
            gi|302141781|emb|CBI18984.3| unnamed protein product
            [Vitis vinifera]
          Length = 341

 Score =  583 bits (1502), Expect = e-164
 Identities = 299/370 (80%), Positives = 319/370 (86%)
 Frame = +3

Query: 195  MAPVLQSTQPWVEKYRPRQVKDVAHQDEVIRVLTNTLETTNCPHMLFYGPPXXXXXXXXX 374
            MAPVLQS+QPWVEKYRP+QVKDVAHQDEV+RVLTNTLETTNCPHMLFYG           
Sbjct: 1    MAPVLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETTNCPHMLFYG----------- 49

Query: 375  XXXXXXXXXXXXXXXXFYGPPGTGKTTTALAICHQLFGPELYKARVLELNASDDRGINVV 554
                               PPGTGKTTTALAI HQLFGPELYK+RVLELNASDDRGINVV
Sbjct: 50   -------------------PPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVV 90

Query: 555  RTKIKDFAAVAVGTRGRQGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFF 734
            RTKIKDFAAVAVG+  RQGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFF
Sbjct: 91   RTKIKDFAAVAVGSGHRQGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFF 150

Query: 735  ICNYISRIIEPLASRCAKFRFKPLSEDIMTSRILHICNEEGLNLDPEALSTLSFISQGDL 914
            ICNYISRIIEPLASRCAKFRFKPLSE+IM+SRILHIC EE LNLD EALSTLS ISQGDL
Sbjct: 151  ICNYISRIIEPLASRCAKFRFKPLSEEIMSSRILHICKEEELNLDSEALSTLSSISQGDL 210

Query: 915  RRAITHLQGAARLFGSSISAKELISVSGVIPHAVVEALFTACKSGDFEKANKEVTNVIAE 1094
            RRAIT+LQGAARLFGS IS+K+LISVSGV+P  VV+ALF ACKSGDF+ ANKEV NVIAE
Sbjct: 211  RRAITYLQGAARLFGSIISSKDLISVSGVVPQHVVQALFAACKSGDFDSANKEVNNVIAE 270

Query: 1095 GYPVSQMLSQLLEVVVEANDITDEMKARICSKLGEADKCLIDGADEYLQLMDVASNTMRA 1274
            GYPVSQML QL +VVVEA DI+DE KARIC +L EADKCL+DGADEYLQL+DVASN MRA
Sbjct: 271  GYPVSQMLYQLFDVVVEA-DISDEQKARICKRLAEADKCLVDGADEYLQLLDVASNAMRA 329

Query: 1275 LCNMPQEFSY 1304
            LCNMP+EF +
Sbjct: 330  LCNMPEEFPH 339


>emb|CAN83520.1| hypothetical protein VITISV_019805 [Vitis vinifera]
          Length = 341

 Score =  581 bits (1497), Expect = e-163
 Identities = 298/370 (80%), Positives = 318/370 (85%)
 Frame = +3

Query: 195  MAPVLQSTQPWVEKYRPRQVKDVAHQDEVIRVLTNTLETTNCPHMLFYGPPXXXXXXXXX 374
            MAPVLQS+QPWVEKYRP+QVKDVAHQDEV+RVLTNTLETTNCPHMLFYG           
Sbjct: 1    MAPVLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETTNCPHMLFYG----------- 49

Query: 375  XXXXXXXXXXXXXXXXFYGPPGTGKTTTALAICHQLFGPELYKARVLELNASDDRGINVV 554
                               PPGTGKTTTALAI HQLFGPELYK+RVLELNASDDRGINVV
Sbjct: 50   -------------------PPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVV 90

Query: 555  RTKIKDFAAVAVGTRGRQGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFF 734
            RTKIKDFA VAVG+  RQGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFF
Sbjct: 91   RTKIKDFAXVAVGSGHRQGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFF 150

Query: 735  ICNYISRIIEPLASRCAKFRFKPLSEDIMTSRILHICNEEGLNLDPEALSTLSFISQGDL 914
            ICNYISRIIEPLASRCAKFRFKPLSE+IM+SRILHIC EE LNLD EALSTLS ISQGDL
Sbjct: 151  ICNYISRIIEPLASRCAKFRFKPLSEEIMSSRILHICKEEELNLDSEALSTLSSISQGDL 210

Query: 915  RRAITHLQGAARLFGSSISAKELISVSGVIPHAVVEALFTACKSGDFEKANKEVTNVIAE 1094
            RRAIT+LQGAARLFGS IS+K+LISVSGV+P  VV+ALF ACKSGDF+ ANKEV NVIAE
Sbjct: 211  RRAITYLQGAARLFGSIISSKDLISVSGVVPQHVVQALFAACKSGDFDSANKEVNNVIAE 270

Query: 1095 GYPVSQMLSQLLEVVVEANDITDEMKARICSKLGEADKCLIDGADEYLQLMDVASNTMRA 1274
            GYPVSQML QL +VVVEA DI+DE KARIC +L EADKCL+DGADEYLQL+DVASN MRA
Sbjct: 271  GYPVSQMLYQLFDVVVEA-DISDEQKARICKRLAEADKCLVDGADEYLQLLDVASNAMRA 329

Query: 1275 LCNMPQEFSY 1304
            LCNMP+EF +
Sbjct: 330  LCNMPEEFPH 339


>ref|XP_002307456.1| predicted protein [Populus trichocarpa] gi|222856905|gb|EEE94452.1|
            predicted protein [Populus trichocarpa]
          Length = 342

 Score =  573 bits (1478), Expect = e-161
 Identities = 289/370 (78%), Positives = 315/370 (85%)
 Frame = +3

Query: 195  MAPVLQSTQPWVEKYRPRQVKDVAHQDEVIRVLTNTLETTNCPHMLFYGPPXXXXXXXXX 374
            MAP+LQS+Q WVEKYRP+Q+KDVAHQDEV+RVLTNTLET NCPHMLFYG           
Sbjct: 1    MAPLLQSSQQWVEKYRPKQIKDVAHQDEVVRVLTNTLETANCPHMLFYG----------- 49

Query: 375  XXXXXXXXXXXXXXXXFYGPPGTGKTTTALAICHQLFGPELYKARVLELNASDDRGINVV 554
                               PPGTGKTTTALAI HQL+GPELYK+RVLELNASDDRGINVV
Sbjct: 50   -------------------PPGTGKTTTALAIAHQLYGPELYKSRVLELNASDDRGINVV 90

Query: 555  RTKIKDFAAVAVGTRGRQGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFF 734
            RTKIKDFAAVAVG+  RQG YPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFF
Sbjct: 91   RTKIKDFAAVAVGSGQRQGVYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFF 150

Query: 735  ICNYISRIIEPLASRCAKFRFKPLSEDIMTSRILHICNEEGLNLDPEALSTLSFISQGDL 914
            ICNYISRIIEPLASRCAKFRFKPL E+IM++RILHICNEEGL LD EALSTLS +SQGDL
Sbjct: 151  ICNYISRIIEPLASRCAKFRFKPLPEEIMSNRILHICNEEGLTLDTEALSTLSSVSQGDL 210

Query: 915  RRAITHLQGAARLFGSSISAKELISVSGVIPHAVVEALFTACKSGDFEKANKEVTNVIAE 1094
            RRAIT+LQGAARLFGSSIS+K+LISVSG IP  V EA++ ACK+GDF+ ANKEV +VIAE
Sbjct: 211  RRAITYLQGAARLFGSSISSKDLISVSGAIPREVTEAIYAACKNGDFDLANKEVNDVIAE 270

Query: 1095 GYPVSQMLSQLLEVVVEANDITDEMKARICSKLGEADKCLIDGADEYLQLMDVASNTMRA 1274
            GYPVSQML+QL EVVVE +DI+DE KARIC  L  ADKCL+DGADEYLQL+DV SNTMR+
Sbjct: 271  GYPVSQMLAQLFEVVVEVDDISDEQKARICKSLATADKCLVDGADEYLQLLDVVSNTMRS 330

Query: 1275 LCNMPQEFSY 1304
            LCNMPQEFSY
Sbjct: 331  LCNMPQEFSY 340


>ref|XP_003634411.1| PREDICTED: replication factor C subunit 4 [Vitis vinifera]
          Length = 334

 Score =  563 bits (1450), Expect = e-158
 Identities = 293/370 (79%), Positives = 312/370 (84%)
 Frame = +3

Query: 195  MAPVLQSTQPWVEKYRPRQVKDVAHQDEVIRVLTNTLETTNCPHMLFYGPPXXXXXXXXX 374
            MAPVLQS+QPWVEKYRP+QVKDVAHQDEV+RVLTNTLETTNCPHMLFYG           
Sbjct: 1    MAPVLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETTNCPHMLFYG----------- 49

Query: 375  XXXXXXXXXXXXXXXXFYGPPGTGKTTTALAICHQLFGPELYKARVLELNASDDRGINVV 554
                               PPGTGKTTTALAI HQLFG       VLELNASDDRGINVV
Sbjct: 50   -------------------PPGTGKTTTALAIAHQLFG-------VLELNASDDRGINVV 83

Query: 555  RTKIKDFAAVAVGTRGRQGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFF 734
            RTKIKDFAAVAVG+  RQGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFF
Sbjct: 84   RTKIKDFAAVAVGSGHRQGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFF 143

Query: 735  ICNYISRIIEPLASRCAKFRFKPLSEDIMTSRILHICNEEGLNLDPEALSTLSFISQGDL 914
            ICNYISRIIEPLASRCAKFRFKPLSE+IM+SRILHIC EE LNLD EALSTLS ISQGDL
Sbjct: 144  ICNYISRIIEPLASRCAKFRFKPLSEEIMSSRILHICKEEELNLDSEALSTLSSISQGDL 203

Query: 915  RRAITHLQGAARLFGSSISAKELISVSGVIPHAVVEALFTACKSGDFEKANKEVTNVIAE 1094
            RRAIT+LQGAARLFGS IS+K+LISVSGV+P  VV+ALF ACKSGDF+ ANKEV NVIAE
Sbjct: 204  RRAITYLQGAARLFGSIISSKDLISVSGVVPQHVVQALFAACKSGDFDSANKEVNNVIAE 263

Query: 1095 GYPVSQMLSQLLEVVVEANDITDEMKARICSKLGEADKCLIDGADEYLQLMDVASNTMRA 1274
            GYPVSQML QL +VVVEA DI+DE KARIC +L EADKCL+DGADEYLQL+DVASN MRA
Sbjct: 264  GYPVSQMLYQLFDVVVEA-DISDEQKARICKRLAEADKCLVDGADEYLQLLDVASNAMRA 322

Query: 1275 LCNMPQEFSY 1304
            LCNMP+EF +
Sbjct: 323  LCNMPEEFPH 332