BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00008178
         (1370 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN78612.1| hypothetical protein VITISV_028922 [Vitis vinifera]   386   e-105
ref|XP_004143147.1| PREDICTED: 50S ribosomal protein L4, chlorop...   377   e-102
ref|XP_002309469.1| predicted protein [Populus trichocarpa] gi|2...   363   4e-98
ref|XP_002525600.1| 50S ribosomal protein L4, putative [Ricinus ...   355   2e-95
sp|O80361.1|RK4_TOBAC RecName: Full=50S ribosomal protein L4, ch...   349   1e-93

>emb|CAN78612.1| hypothetical protein VITISV_028922 [Vitis vinifera]
          Length = 306

 Score =  386 bits (992), Expect = e-105
 Identities = 201/273 (73%), Positives = 225/273 (82%)
 Frame = +3

Query: 129 MATHAVSPTMXXXXXXXXXXXPHQNPXXXXXXXXXXXXTIRPLSHSQTLKNPNSLKTLIR 308
           MAT A SP++             QNP            T +P S  + LK P S    +R
Sbjct: 1   MATTATSPSISFFSSSIFGSSSRQNPNFLS--------TFKPNSFLKPLK-PLS----VR 47

Query: 309 SEVATIPILSFEGEKVGETFLDLKSAPSETARAVVHRGIITDQQNKRRGTASTLTRAEVR 488
           S++  IPILSF GEKVGET L+LKSAP +TARAVVHRGIITD QN+RRGTASTLTR EVR
Sbjct: 48  SDLVAIPILSFTGEKVGETQLNLKSAPLDTARAVVHRGIITDLQNRRRGTASTLTRGEVR 107

Query: 489 GGGKKPYPQKKTGRARRGSQRTPLRPGGGVIFGPKPKDWSIKINRKEKRLAISTALASAA 668
           GGGKKPYPQKKTGRARRGSQRTPLRPGGGV+FGPKP+DWSIKINRKEKRLAISTA++SAA
Sbjct: 108 GGGKKPYPQKKTGRARRGSQRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAMSSAA 167

Query: 669 VNTIVVEDFADKFDKPKTKEFIEALKRWGLDPKEKSMFLVTEVSDNVKLSSRNIGTIKML 848
           VNTIVVEDF+DKFDKPKTKEFI A+KRWG+DPKEKSMFL+TEVSDNV+LSSRNIGT+KML
Sbjct: 168 VNTIVVEDFSDKFDKPKTKEFISAMKRWGIDPKEKSMFLMTEVSDNVRLSSRNIGTLKML 227

Query: 849 TPRTLNLFDILNADKLILTQTTVDYLNRMYGID 947
           TPRTLNLFDILN+DKL+LTQ TVDYLNRMY ++
Sbjct: 228 TPRTLNLFDILNSDKLVLTQETVDYLNRMYAVE 260


>ref|XP_004143147.1| PREDICTED: 50S ribosomal protein L4, chloroplastic-like [Cucumis
           sativus] gi|449496602|ref|XP_004160176.1| PREDICTED: 50S
           ribosomal protein L4, chloroplastic-like [Cucumis
           sativus]
          Length = 288

 Score =  377 bits (968), Expect = e-102
 Identities = 189/228 (82%), Positives = 210/228 (92%), Gaps = 5/228 (2%)
 Frame = +3

Query: 282 PNSLK----TL-IRSEVATIPILSFEGEKVGETFLDLKSAPSETARAVVHRGIITDQQNK 446
           PNSLK    TL I SE+AT+P+LSF G+KVGET+LDLKSAP ETARAVVHR IITDQQNK
Sbjct: 35  PNSLKPQTKTLSISSELATLPVLSFTGQKVGETYLDLKSAPPETARAVVHRAIITDQQNK 94

Query: 447 RRGTASTLTRAEVRGGGKKPYPQKKTGRARRGSQRTPLRPGGGVIFGPKPKDWSIKINRK 626
           RRGTASTLTRAEV GGGKKPY QKKTGRARRGS RTPLRPGGGV+FGPKP+DWSIKINRK
Sbjct: 95  RRGTASTLTRAEVSGGGKKPYKQKKTGRARRGSMRTPLRPGGGVVFGPKPRDWSIKINRK 154

Query: 627 EKRLAISTALASAAVNTIVVEDFADKFDKPKTKEFIEALKRWGLDPKEKSMFLVTEVSDN 806
           EK+LAISTA+ASAAVNTIVVE+F DKF+KPKTKEFI ALKRWG+DPKEKS+FL+TEVSDN
Sbjct: 155 EKKLAISTAVASAAVNTIVVEEFGDKFEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDN 214

Query: 807 VKLSSRNIGTIKMLTPRTLNLFDILNADKLILTQTTVDYLNRMYGIDY 950
           V+LSSRNIGT+K+LTPRTLNLFDIL++DKL+LT T VDYLN  YGI+Y
Sbjct: 215 VRLSSRNIGTLKLLTPRTLNLFDILDSDKLVLTPTAVDYLNERYGINY 262


>ref|XP_002309469.1| predicted protein [Populus trichocarpa] gi|222855445|gb|EEE92992.1|
           predicted protein [Populus trichocarpa]
          Length = 279

 Score =  363 bits (933), Expect = 4e-98
 Identities = 185/239 (77%), Positives = 208/239 (87%), Gaps = 4/239 (1%)
 Frame = +3

Query: 246 IRPLSHSQTLKNPNSLKTL-IRSEVATIPILSFEGEKVGETFLDLKSAPSETARAVVHRG 422
           I  L+   T K   SLK+L I  +VAT+PILSF GEK+GET+LDLKSAP ETARAVVHRG
Sbjct: 23  IPKLTSLSTTKPQYSLKSLSISCQVATLPILSFTGEKIGETYLDLKSAPPETARAVVHRG 82

Query: 423 IITDQQNKRRGTASTLTRAEVRGGGKKPYPQKKTGRARRGSQRTPLRPGGGVIFGPKPKD 602
           IITDQQNKRRGTASTLTR EVRGGG+KPYPQKKTGRARRGS R+PLRPGGGVIFGPKP+D
Sbjct: 83  IITDQQNKRRGTASTLTRGEVRGGGRKPYPQKKTGRARRGSMRSPLRPGGGVIFGPKPRD 142

Query: 603 WSIKINRKEKRLAISTALASAA---VNTIVVEDFADKFDKPKTKEFIEALKRWGLDPKEK 773
           WSIKINRKEKRLA+STAL+SAA    + I VE+F DKF+KPKTKEFIEA+ RWGLDPKEK
Sbjct: 143 WSIKINRKEKRLAMSTALSSAASESESVICVEEFGDKFEKPKTKEFIEAMNRWGLDPKEK 202

Query: 774 SMFLVTEVSDNVKLSSRNIGTIKMLTPRTLNLFDILNADKLILTQTTVDYLNRMYGIDY 950
            MFL+ +VSDNV LSSRNIGT++MLTPRTLNLFDILN+DKL+LT  TVDYLN  YG+D+
Sbjct: 203 VMFLMMDVSDNVGLSSRNIGTLRMLTPRTLNLFDILNSDKLVLTPDTVDYLNGRYGVDF 261


>ref|XP_002525600.1| 50S ribosomal protein L4, putative [Ricinus communis]
           gi|223535036|gb|EEF36718.1| 50S ribosomal protein L4,
           putative [Ricinus communis]
          Length = 283

 Score =  355 bits (911), Expect = 2e-95
 Identities = 176/231 (76%), Positives = 202/231 (87%), Gaps = 1/231 (0%)
 Frame = +3

Query: 258 SHSQTLKNPNSLKTL-IRSEVATIPILSFEGEKVGETFLDLKSAPSETARAVVHRGIITD 434
           S   +L  PNS  +L I  +V+T+PILSF GEK+GET+LDLK+AP +TARAVVHR IITD
Sbjct: 31  SKPNSLNPPNSSLSLSISCQVSTLPILSFTGEKIGETYLDLKTAPPDTARAVVHRAIITD 90

Query: 435 QQNKRRGTASTLTRAEVRGGGKKPYPQKKTGRARRGSQRTPLRPGGGVIFGPKPKDWSIK 614
           QQNKRRGTASTLTRAEVRGGGKKPY QKKTGRARRGS RTPLRPGGGVIFGPKP+DWSIK
Sbjct: 91  QQNKRRGTASTLTRAEVRGGGKKPYQQKKTGRARRGSSRTPLRPGGGVIFGPKPRDWSIK 150

Query: 615 INRKEKRLAISTALASAAVNTIVVEDFADKFDKPKTKEFIEALKRWGLDPKEKSMFLVTE 794
           IN+KEKRLAISTAL SA  + + VE+F DKF+KPKTK+FIEA+KRWGLDPKEK MFL+ +
Sbjct: 151 INKKEKRLAISTALCSATESMLCVEEFGDKFEKPKTKDFIEAMKRWGLDPKEKVMFLMMD 210

Query: 795 VSDNVKLSSRNIGTIKMLTPRTLNLFDILNADKLILTQTTVDYLNRMYGID 947
           V+D+V LSSRNIGT++MLTPRTLNLFDILN+DKL+LT   VDYLN  YG+D
Sbjct: 211 VADSVGLSSRNIGTLRMLTPRTLNLFDILNSDKLVLTPDAVDYLNGRYGVD 261


>sp|O80361.1|RK4_TOBAC RecName: Full=50S ribosomal protein L4, chloroplastic; AltName:
           Full=CL4; AltName: Full=R-protein L4; Flags: Precursor
           gi|3298439|dbj|BAA31510.1| chloroplast ribosomal protein
           L4 [Nicotiana tabacum]
          Length = 282

 Score =  349 bits (895), Expect = 1e-93
 Identities = 169/213 (79%), Positives = 198/213 (92%)
 Frame = +3

Query: 303 IRSEVATIPILSFEGEKVGETFLDLKSAPSETARAVVHRGIITDQQNKRRGTASTLTRAE 482
           IRSEVATIPILSF+G +VG T L+LKSAP +TARAVVHRG+ TD +N+RRGTASTLTR+E
Sbjct: 41  IRSEVATIPILSFDGAEVGSTTLNLKSAPLDTARAVVHRGLTTDLRNQRRGTASTLTRSE 100

Query: 483 VRGGGKKPYPQKKTGRARRGSQRTPLRPGGGVIFGPKPKDWSIKINRKEKRLAISTALAS 662
           VRGGG KPYPQKKTGRARRGS RTPLRPGGGV+FGPKPKDWS+KIN+KEKRLAISTAL+S
Sbjct: 101 VRGGGIKPYPQKKTGRARRGSNRTPLRPGGGVVFGPKPKDWSVKINKKEKRLAISTALSS 160

Query: 663 AAVNTIVVEDFADKFDKPKTKEFIEALKRWGLDPKEKSMFLVTEVSDNVKLSSRNIGTIK 842
           A+ NTIVVE+F DKF+KPKTKEFI+ ++RWGLDPKEKS+FL+T+VSDNV LSSRNIGT+K
Sbjct: 161 ASENTIVVEEFNDKFEKPKTKEFIDLMRRWGLDPKEKSLFLMTDVSDNVILSSRNIGTLK 220

Query: 843 MLTPRTLNLFDILNADKLILTQTTVDYLNRMYG 941
           MLTPRTLNLFDIL+++KL+LT++ VD+LN  YG
Sbjct: 221 MLTPRTLNLFDILDSEKLVLTKSAVDFLNERYG 253