BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00008062
         (1275 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002263359.1| PREDICTED: small nuclear ribonucleoprotein-a...   211   4e-52
ref|XP_002317685.1| predicted protein [Populus trichocarpa] gi|2...   208   3e-51
gb|ABK93409.1| unknown [Populus trichocarpa]                          208   3e-51
ref|NP_193777.1| small nuclear ribonucleoprotein associated prot...   207   5e-51
ref|XP_002867880.1| hypothetical protein ARALYDRAFT_492815 [Arab...   207   5e-51

>ref|XP_002263359.1| PREDICTED: small nuclear ribonucleoprotein-associated protein B'
           [Vitis vinifera] gi|147774905|emb|CAN61706.1|
           hypothetical protein VITISV_001610 [Vitis vinifera]
          Length = 276

 Score =  211 bits (536), Expect = 4e-52
 Identities = 105/151 (69%), Positives = 112/151 (74%)
 Frame = +3

Query: 105 MSMSKSSKMLQYINYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPSKGKKNE 284
           MSMSKSSKMLQYINYRMRVTIQDGRQL+GKFMAFDRHMNLVLGDCEEFRKLPP+KGKKNE
Sbjct: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNE 60

Query: 285 EREDXXXXXXXXXXXXXXXSMTVEGPPPPEESXXXXXXXXXXXXXXXXXXXXXXIPTAPL 464
           ERE+               SMTVEGPPPPEES                      IPTAPL
Sbjct: 61  EREERRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVGAAAMAGPGIGRAAGRGIPTAPL 120

Query: 465 VQAQPGLSGPVRGIGGPQPNMMQPQISRPPL 557
           +QAQPGL+GPVRG+GGP P MMQPQISRPP+
Sbjct: 121 IQAQPGLAGPVRGVGGPAPGMMQPQISRPPV 151


>ref|XP_002317685.1| predicted protein [Populus trichocarpa] gi|222860750|gb|EEE98297.1|
           predicted protein [Populus trichocarpa]
          Length = 250

 Score =  208 bits (529), Expect = 3e-51
 Identities = 107/155 (69%), Positives = 113/155 (72%), Gaps = 1/155 (0%)
 Frame = +3

Query: 105 MSMSKSSKMLQYINYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPSKGKK-N 281
           MSMSKSSKMLQYINYRMRVTIQDGRQL+GKFMAFDRHMNLVLGDCEEFRKLPP+KGKK N
Sbjct: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60

Query: 282 EEREDXXXXXXXXXXXXXXXSMTVEGPPPPEESXXXXXXXXXXXXXXXXXXXXXXIPTAP 461
           EERED               SMTVEGPPPPEES                      IPTAP
Sbjct: 61  EEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSAAAVAGPGLGRAAGRGIPTAP 120

Query: 462 LVQAQPGLSGPVRGIGGPQPNMMQPQISRPPLNYP 566
           LVQAQPGL+GPVRG+GGP P MMQPQ+SRP L+ P
Sbjct: 121 LVQAQPGLAGPVRGVGGPSPGMMQPQLSRPQLSAP 155


>gb|ABK93409.1| unknown [Populus trichocarpa]
          Length = 286

 Score =  208 bits (529), Expect = 3e-51
 Identities = 107/155 (69%), Positives = 113/155 (72%), Gaps = 1/155 (0%)
 Frame = +3

Query: 105 MSMSKSSKMLQYINYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPSKGKK-N 281
           MSMSKSSKMLQYINYRMRVTIQDGRQL+GKFMAFDRHMNLVLGDCEEFRKLPP+KGKK N
Sbjct: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60

Query: 282 EEREDXXXXXXXXXXXXXXXSMTVEGPPPPEESXXXXXXXXXXXXXXXXXXXXXXIPTAP 461
           EERED               SMTVEGPPPPEES                      IPTAP
Sbjct: 61  EEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSAAAVAGPGLGRAAGRGIPTAP 120

Query: 462 LVQAQPGLSGPVRGIGGPQPNMMQPQISRPPLNYP 566
           LVQAQPGL+GPVRG+GGP P MMQPQ+SRP L+ P
Sbjct: 121 LVQAQPGLAGPVRGVGGPSPGMMQPQLSRPQLSAP 155


>ref|NP_193777.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis
           thaliana] gi|30685110|ref|NP_849414.1| small nuclear
           ribonucleoprotein associated protein B [Arabidopsis
           thaliana] gi|79325195|ref|NP_001031682.1| small nuclear
           ribonucleoprotein associated protein B [Arabidopsis
           thaliana] gi|238480869|ref|NP_001154258.1| small nuclear
           ribonucleoprotein associated protein B [Arabidopsis
           thaliana] gi|5262167|emb|CAB45810.1| putative snRNP
           protein [Arabidopsis thaliana]
           gi|7268840|emb|CAB79044.1| putative snRNP protein
           [Arabidopsis thaliana] gi|28393634|gb|AAO42236.1|
           putative snRNP protein [Arabidopsis thaliana]
           gi|28827492|gb|AAO50590.1| putative snRNP protein
           [Arabidopsis thaliana] gi|222423490|dbj|BAH19715.1|
           AT4G20440 [Arabidopsis thaliana]
           gi|332658930|gb|AEE84330.1| small nuclear
           ribonucleoprotein associated protein B [Arabidopsis
           thaliana] gi|332658931|gb|AEE84331.1| small nuclear
           ribonucleoprotein associated protein B [Arabidopsis
           thaliana] gi|332658932|gb|AEE84332.1| small nuclear
           ribonucleoprotein associated protein B [Arabidopsis
           thaliana] gi|332658933|gb|AEE84333.1| small nuclear
           ribonucleoprotein associated protein B [Arabidopsis
           thaliana]
          Length = 257

 Score =  207 bits (527), Expect = 5e-51
 Identities = 107/159 (67%), Positives = 113/159 (71%), Gaps = 1/159 (0%)
 Frame = +3

Query: 105 MSMSKSSKMLQYINYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPSKGKK-N 281
           MSMSKSSKMLQ+INYRMRVTIQDGRQL+GKFMAFDRHMNLVLGDCEEFRKLPP+KGKK N
Sbjct: 1   MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKIN 60

Query: 282 EEREDXXXXXXXXXXXXXXXSMTVEGPPPPEESXXXXXXXXXXXXXXXXXXXXXXIPTAP 461
           EERED               SMTVEGPPPPEES                      +PT P
Sbjct: 61  EEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAGSAAAVAGPGIGRAAGRGVPTGP 120

Query: 462 LVQAQPGLSGPVRGIGGPQPNMMQPQISRPPLNYPTPIV 578
           LVQAQPGLSGPVRG+GGP P MMQPQISRPP     PI+
Sbjct: 121 LVQAQPGLSGPVRGVGGPAPGMMQPQISRPPQLSAPPII 159


>ref|XP_002867880.1| hypothetical protein ARALYDRAFT_492815 [Arabidopsis lyrata subsp.
           lyrata] gi|297313716|gb|EFH44139.1| hypothetical protein
           ARALYDRAFT_492815 [Arabidopsis lyrata subsp. lyrata]
          Length = 258

 Score =  207 bits (527), Expect = 5e-51
 Identities = 107/159 (67%), Positives = 113/159 (71%), Gaps = 1/159 (0%)
 Frame = +3

Query: 105 MSMSKSSKMLQYINYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPSKGKK-N 281
           MSMSKSSKMLQ+INYRMRVTIQDGRQL+GKFMAFDRHMNLVLGDCEEFRKLPP+KGKK N
Sbjct: 1   MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKIN 60

Query: 282 EEREDXXXXXXXXXXXXXXXSMTVEGPPPPEESXXXXXXXXXXXXXXXXXXXXXXIPTAP 461
           EERED               SMTVEGPPPPEES                      +PT P
Sbjct: 61  EEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAGSAAAVAGPGIGRAAGRGVPTGP 120

Query: 462 LVQAQPGLSGPVRGIGGPQPNMMQPQISRPPLNYPTPIV 578
           LVQAQPGLSGPVRG+GGP P MMQPQISRPP     PI+
Sbjct: 121 LVQAQPGLSGPVRGVGGPAPGMMQPQISRPPQLSAPPII 159