BLASTX nr result
ID: Cimicifuga21_contig00008020
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cimicifuga21_contig00008020
(1610 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002267010.1| PREDICTED: RNA pseudourine synthase 3, mitoc... 300 e-145
emb|CBI18448.3| unnamed protein product [Vitis vinifera] 300 e-142
ref|XP_003549365.1| PREDICTED: RNA pseudourine synthase 3, mitoc... 295 e-141
ref|XP_002526838.1| ribosomal pseudouridine synthase, putative [... 287 e-137
ref|NP_178012.2| RNA pseudourine synthase 3 [Arabidopsis thalian... 294 e-136
>ref|XP_002267010.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like [Vitis
vinifera]
Length = 479
Score = 300 bits (768), Expect(2) = e-145
Identities = 143/180 (79%), Positives = 160/180 (88%), Gaps = 1/180 (0%)
Frame = -1
Query: 1055 KVLLNDGKTERVIIAHPSGIEASQDSITEYRVLGPTINGCSWVELCPLTGRKHQLRVHCA 876
KVLL+DGKTERVI+A+ SG+EASQ++ITEYRVLGP INGCSW+ELCP T RKHQLRVHCA
Sbjct: 300 KVLLDDGKTERVILANQSGLEASQEAITEYRVLGPMINGCSWIELCPRTSRKHQLRVHCA 359
Query: 875 EALGTPIVGDYKYGWYVHSRWKQMPRVDIEQTTGQAYKMRRPEGLDVQKGSVLSKVPLLH 696
EALGTPIVGDYKYGW+VH RWKQMPRVD+E TTG+ YKMRRPEGLDVQKGSVLSKVPLLH
Sbjct: 360 EALGTPIVGDYKYGWFVHRRWKQMPRVDLEPTTGKPYKMRRPEGLDVQKGSVLSKVPLLH 419
Query: 695 LHCRELVLPNIAKFQDVLGGH-RQLDKQSDLSTKPDLLRFVAPMPSHMKISWNLMSSYLV 519
LHCREL+LPNIAKF +L + ++ LS KPD+LRFVA MP+HMKISWNLMSSYLV
Sbjct: 420 LHCRELILPNIAKFLPILDPKPKNQNQYPKLSLKPDILRFVASMPNHMKISWNLMSSYLV 479
Score = 243 bits (619), Expect(2) = e-145
Identities = 119/165 (72%), Positives = 138/165 (83%)
Frame = -2
Query: 1609 VQMECSNLCDALKQEEDQHQSLRKISPNEIMKVGAKIYVPVSVAETKISKRFDTIPSGTL 1430
V ME SNL D+ ++E Q + LRKI PNE+M+ G +IYVPVSVAE +ISKRFDTIPSGTL
Sbjct: 108 VHMERSNLDDSSLEKEGQIKPLRKIKPNEVMEAGTRIYVPVSVAEARISKRFDTIPSGTL 167
Query: 1429 YPNADEIEYLQRLVMYKDSAIMILNKPPKLPVKGNLPVHNSMDALAATALSYGFEDGPKL 1250
+PNADEIEYLQRLV YKD AI++LNKPPK+P+KGNLPVHNSMDALAA AL++ +E+GPKL
Sbjct: 168 HPNADEIEYLQRLVTYKDPAILVLNKPPKVPLKGNLPVHNSMDALAAAALTFDYEEGPKL 227
Query: 1249 VHRLDRESSGLLLMGRTKESIAQLQWLFSDTXXXXXXXKTWNDAC 1115
VHRLDRESSGLLLMGRTKES+A L WLFSD K W+DAC
Sbjct: 228 VHRLDRESSGLLLMGRTKESVAHLHWLFSDINKAKSLSKAWDDAC 272
>emb|CBI18448.3| unnamed protein product [Vitis vinifera]
Length = 481
Score = 300 bits (768), Expect(2) = e-142
Identities = 143/180 (79%), Positives = 160/180 (88%), Gaps = 1/180 (0%)
Frame = -1
Query: 1055 KVLLNDGKTERVIIAHPSGIEASQDSITEYRVLGPTINGCSWVELCPLTGRKHQLRVHCA 876
KVLL+DGKTERVI+A+ SG+EASQ++ITEYRVLGP INGCSW+ELCP T RKHQLRVHCA
Sbjct: 302 KVLLDDGKTERVILANQSGLEASQEAITEYRVLGPMINGCSWIELCPRTSRKHQLRVHCA 361
Query: 875 EALGTPIVGDYKYGWYVHSRWKQMPRVDIEQTTGQAYKMRRPEGLDVQKGSVLSKVPLLH 696
EALGTPIVGDYKYGW+VH RWKQMPRVD+E TTG+ YKMRRPEGLDVQKGSVLSKVPLLH
Sbjct: 362 EALGTPIVGDYKYGWFVHRRWKQMPRVDLEPTTGKPYKMRRPEGLDVQKGSVLSKVPLLH 421
Query: 695 LHCRELVLPNIAKFQDVLGGH-RQLDKQSDLSTKPDLLRFVAPMPSHMKISWNLMSSYLV 519
LHCREL+LPNIAKF +L + ++ LS KPD+LRFVA MP+HMKISWNLMSSYLV
Sbjct: 422 LHCRELILPNIAKFLPILDPKPKNQNQYPKLSLKPDILRFVASMPNHMKISWNLMSSYLV 481
Score = 233 bits (595), Expect(2) = e-142
Identities = 116/167 (69%), Positives = 138/167 (82%), Gaps = 2/167 (1%)
Frame = -2
Query: 1609 VQMECSNLCDALKQEEDQHQSLRKISPNEIMKVGAKIYVPVSVAETKISKRFDTIPSGTL 1430
V ME SNL D+ ++E Q + LRKI PNE+M+ G +IYVPVSVAE +ISKRFDTIPSGTL
Sbjct: 108 VHMERSNLDDSSLEKEGQIKPLRKIKPNEVMEAGTRIYVPVSVAEARISKRFDTIPSGTL 167
Query: 1429 YPNADEIEYLQRL--VMYKDSAIMILNKPPKLPVKGNLPVHNSMDALAATALSYGFEDGP 1256
+PNADEIEYLQRL + ++D AI++LNKPPK+P+KGNLPVHNSMDALAA AL++ +E+GP
Sbjct: 168 HPNADEIEYLQRLWLLKFQDPAILVLNKPPKVPLKGNLPVHNSMDALAAAALTFDYEEGP 227
Query: 1255 KLVHRLDRESSGLLLMGRTKESIAQLQWLFSDTXXXXXXXKTWNDAC 1115
KLVHRLDRESSGLLLMGRTKES+A L WLFSD K W+DAC
Sbjct: 228 KLVHRLDRESSGLLLMGRTKESVAHLHWLFSDINKAKSLSKAWDDAC 274
>ref|XP_003549365.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like [Glycine
max]
Length = 554
Score = 295 bits (755), Expect(2) = e-141
Identities = 141/179 (78%), Positives = 157/179 (87%)
Frame = -1
Query: 1055 KVLLNDGKTERVIIAHPSGIEASQDSITEYRVLGPTINGCSWVELCPLTGRKHQLRVHCA 876
KVLLNDGKTER+I+AH S +E Q+++TEYRVLGP INGCSWVEL PLT RKHQLRVHCA
Sbjct: 377 KVLLNDGKTERIILAHHSSVEPRQEAVTEYRVLGPQINGCSWVELRPLTYRKHQLRVHCA 436
Query: 875 EALGTPIVGDYKYGWYVHSRWKQMPRVDIEQTTGQAYKMRRPEGLDVQKGSVLSKVPLLH 696
EALGTPIVGDYKYGW+VHSRWKQMPRVDIE TTG+ YK+RRPEGLDVQKGSVLSKVPLLH
Sbjct: 437 EALGTPIVGDYKYGWFVHSRWKQMPRVDIEPTTGKPYKLRRPEGLDVQKGSVLSKVPLLH 496
Query: 695 LHCRELVLPNIAKFQDVLGGHRQLDKQSDLSTKPDLLRFVAPMPSHMKISWNLMSSYLV 519
LHCRELVLPNI KF VL + + ++ L +PD+LRFVA MPSHM+ISWNLMSSYLV
Sbjct: 497 LHCRELVLPNIVKFMHVLNNSSE-ELRTSLREQPDVLRFVATMPSHMRISWNLMSSYLV 554
Score = 235 bits (599), Expect(2) = e-141
Identities = 113/165 (68%), Positives = 140/165 (84%)
Frame = -2
Query: 1609 VQMECSNLCDALKQEEDQHQSLRKISPNEIMKVGAKIYVPVSVAETKISKRFDTIPSGTL 1430
VQME D+ Q+E+Q + +RKI PNE+MK GA+++VPVS+ ET+ISKR+D IPSGTL
Sbjct: 188 VQMEAD---DSSTQKEEQMKPMRKIRPNEVMKRGARVHVPVSICETRISKRYDAIPSGTL 244
Query: 1429 YPNADEIEYLQRLVMYKDSAIMILNKPPKLPVKGNLPVHNSMDALAATALSYGFEDGPKL 1250
YPNADEI+YLQRLV+YKDSAI++LNKPPKLPVKG+LPVHNSMDALAA ALSY +++GPKL
Sbjct: 245 YPNADEIKYLQRLVIYKDSAIIVLNKPPKLPVKGSLPVHNSMDALAAAALSYDYDEGPKL 304
Query: 1249 VHRLDRESSGLLLMGRTKESIAQLQWLFSDTXXXXXXXKTWNDAC 1115
VHRLDRESSG+LL+GRTK+S++ LQWLFS+ K WN+AC
Sbjct: 305 VHRLDRESSGILLLGRTKDSVSHLQWLFSNINNAKSSCKDWNEAC 349
>ref|XP_002526838.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
gi|223533842|gb|EEF35573.1| ribosomal pseudouridine
synthase, putative [Ricinus communis]
Length = 468
Score = 287 bits (735), Expect(2) = e-137
Identities = 140/179 (78%), Positives = 153/179 (85%)
Frame = -1
Query: 1055 KVLLNDGKTERVIIAHPSGIEASQDSITEYRVLGPTINGCSWVELCPLTGRKHQLRVHCA 876
KVLLNDGKTERV++A SG+EASQ+++TEYRVLGP INGCSW+EL PLT RKHQLRVHCA
Sbjct: 291 KVLLNDGKTERVVLAQHSGLEASQEALTEYRVLGPRINGCSWIELRPLTSRKHQLRVHCA 350
Query: 875 EALGTPIVGDYKYGWYVHSRWKQMPRVDIEQTTGQAYKMRRPEGLDVQKGSVLSKVPLLH 696
EALGTPIVGDYKYGW VH RWKQMPRVDIE +G+ YK+RRP GLDVQKGSVLSKVPLLH
Sbjct: 351 EALGTPIVGDYKYGWCVHQRWKQMPRVDIEPFSGKPYKLRRPAGLDVQKGSVLSKVPLLH 410
Query: 695 LHCRELVLPNIAKFQDVLGGHRQLDKQSDLSTKPDLLRFVAPMPSHMKISWNLMSSYLV 519
LHCRE VLPNIAKF VL + + L KPDLLRFVA MP+HMKISWNLMSSYLV
Sbjct: 411 LHCREFVLPNIAKFLAVL-NEKSENIHPALDAKPDLLRFVASMPTHMKISWNLMSSYLV 468
Score = 229 bits (585), Expect(2) = e-137
Identities = 116/163 (71%), Positives = 133/163 (81%)
Frame = -2
Query: 1603 MECSNLCDALKQEEDQHQSLRKISPNEIMKVGAKIYVPVSVAETKISKRFDTIPSGTLYP 1424
+EC N ++ E SLRKI N+IM+ GA+++V VSVAET+ISKRFDTIPSGTLYP
Sbjct: 103 IECPNGSGSI--EYGGQMSLRKIKHNDIMEAGARVHVAVSVAETRISKRFDTIPSGTLYP 160
Query: 1423 NADEIEYLQRLVMYKDSAIMILNKPPKLPVKGNLPVHNSMDALAATALSYGFEDGPKLVH 1244
NADEI+YLQRLV YKDSAI++LNKPP+LPVKGNLP+HNSMDALAA ALSY +++GPKLV
Sbjct: 161 NADEIQYLQRLVKYKDSAIIVLNKPPRLPVKGNLPLHNSMDALAAAALSYDYDEGPKLVQ 220
Query: 1243 RLDRESSGLLLMGRTKESIAQLQWLFSDTXXXXXXXKTWNDAC 1115
RLDRESSGLLLMGRTKESI LQWLFSD K WNDAC
Sbjct: 221 RLDRESSGLLLMGRTKESIDHLQWLFSDVNKSNSRCKAWNDAC 263
>ref|NP_178012.2| RNA pseudourine synthase 3 [Arabidopsis thaliana]
gi|75110951|sp|Q5XET6.1|PUS3_ARATH RecName: Full=RNA
pseudourine synthase 3, mitochondrial; AltName: Full=RNA
pseudouridylate synthase 3; AltName: Full=RNA-uridine
isomerase 3; Flags: Precursor gi|53850479|gb|AAU95416.1|
At1g78910 [Arabidopsis thaliana]
gi|56790228|gb|AAW30031.1| At1g78910 [Arabidopsis
thaliana] gi|332198052|gb|AEE36173.1| RNA pseudourine
synthase 3 [Arabidopsis thaliana]
Length = 478
Score = 294 bits (753), Expect(2) = e-136
Identities = 140/179 (78%), Positives = 155/179 (86%)
Frame = -1
Query: 1055 KVLLNDGKTERVIIAHPSGIEASQDSITEYRVLGPTINGCSWVELCPLTGRKHQLRVHCA 876
KVLL+DGKT+RV++A SG EASQD+ITEY+VLGP INGCSWVEL P+T RKHQLRVHCA
Sbjct: 300 KVLLDDGKTDRVVLAQGSGFEASQDAITEYKVLGPKINGCSWVELRPITSRKHQLRVHCA 359
Query: 875 EALGTPIVGDYKYGWYVHSRWKQMPRVDIEQTTGQAYKMRRPEGLDVQKGSVLSKVPLLH 696
EALGTPIVGDYKYGW+VH RWKQMP+VDIE TTG+ YK+RRPEGLDVQKGSVLSKVPLLH
Sbjct: 360 EALGTPIVGDYKYGWFVHKRWKQMPQVDIEPTTGKPYKLRRPEGLDVQKGSVLSKVPLLH 419
Query: 695 LHCRELVLPNIAKFQDVLGGHRQLDKQSDLSTKPDLLRFVAPMPSHMKISWNLMSSYLV 519
LHCRE+VLPNIAKF V+ + + KPDLLRFVA MPSHMKISWNLMSSYLV
Sbjct: 420 LHCREMVLPNIAKFLHVMNQQETEPLHTGIIDKPDLLRFVASMPSHMKISWNLMSSYLV 478
Score = 219 bits (559), Expect(2) = e-136
Identities = 109/165 (66%), Positives = 133/165 (80%)
Frame = -2
Query: 1609 VQMECSNLCDALKQEEDQHQSLRKISPNEIMKVGAKIYVPVSVAETKISKRFDTIPSGTL 1430
VQME DA +++ED +RKI NE+M++G KI++PVS+AE +ISKR+DTIPSGTL
Sbjct: 108 VQMEFRGRRDASREKEDGAIPMRKIKHNEVMQIGDKIWLPVSIAEMRISKRYDTIPSGTL 167
Query: 1429 YPNADEIEYLQRLVMYKDSAIMILNKPPKLPVKGNLPVHNSMDALAATALSYGFEDGPKL 1250
YPNADEI YLQRLV +KDSAI++LNKPPKLPVKGN+P+HNSMDALAA ALS+G ++GP+L
Sbjct: 168 YPNADEIAYLQRLVRFKDSAIIVLNKPPKLPVKGNVPIHNSMDALAAAALSFGNDEGPRL 227
Query: 1249 VHRLDRESSGLLLMGRTKESIAQLQWLFSDTXXXXXXXKTWNDAC 1115
VHRLDRE+SGLL+MGRTKESI L +FSD K WN AC
Sbjct: 228 VHRLDRETSGLLVMGRTKESIDYLHSVFSDYKGRNSSCKAWNKAC 272