BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00008018
         (1889 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002279701.2| PREDICTED: pentatricopeptide repeat-containi...   640   0.0  
ref|XP_002522838.1| pentatricopeptide repeat-containing protein,...   577   e-162
ref|XP_002319806.1| predicted protein [Populus trichocarpa] gi|2...   570   e-160
ref|XP_003539564.1| PREDICTED: pentatricopeptide repeat-containi...   542   e-151
ref|XP_003541878.1| PREDICTED: pentatricopeptide repeat-containi...   506   e-141

>ref|XP_002279701.2| PREDICTED: pentatricopeptide repeat-containing protein At4g04790,
            mitochondrial-like [Vitis vinifera]
          Length = 848

 Score =  640 bits (1650), Expect = 0.0
 Identities = 335/636 (52%), Positives = 443/636 (69%), Gaps = 7/636 (1%)
 Frame = -1

Query: 1889 EESEADLFRAISGILGAKSAEVVGSCVLPASDVPNDGESQEKNLDIPWFXXXXXXXXXXX 1710
            E+S   L + +S IL   S         P S + ND +  EK LD+PWF           
Sbjct: 69   EDSTKQLSQTLSSILCGGS---------PDSQLTNDEKPLEKVLDVPWFPTLSHNNISL- 118

Query: 1709 XXXXXSDRVKVTSRVRKEKWVFKNSQSHRFQRLVTMCGKKMGADATLAVFGKLRRETGLK 1530
                   R K  SR RK+KWVFKN+Q  R  RLV  C +K+G +AT+ VFGKL RETG+K
Sbjct: 119  -------RRKEVSRERKQKWVFKNTQGGRLDRLVKTCAQKLGTEATIQVFGKLGRETGVK 171

Query: 1529 EYKTLIRFCVEKAKESENEEDSLDHIHRAYQLFRSMREQGFQVEDEFFGPLLLYLVDMRM 1350
            EYK L+  C+EKA+ S++EE SL+ I++A+QLF  M+EQGF +E+E +GP  +YL+DM M
Sbjct: 172  EYKALLGICIEKARTSDDEEASLEQIYKAFQLFEEMKEQGFHIEEETYGPFFMYLIDMGM 231

Query: 1349 VEEFHFFSEAIKDGNSAMLPRLGYYEMLLWITVKNEDKVQELCNSVVFDADG-------D 1191
            +EEFHFF   I D NS  L RLGYYEMLLW+ V NE+K+QELCN +  D DG       D
Sbjct: 232  IEEFHFFHGVITDENSRSLSRLGYYEMLLWVRVNNEEKIQELCNGIAAD-DGADKPNLTD 290

Query: 1190 GFHLAENYLLAFCETDRKKEILQLLEIVDISKVSSLNYVSSIFESMGRQXXXXXXXXXXX 1011
              ++AENY+LA CE+ RK+E+L++LEI+DI+KVSS++YV+SIF+S+GR            
Sbjct: 291  TVYIAENYVLALCESGRKEELLKVLEIIDITKVSSVDYVASIFKSLGRLSLASFMEKFVS 350

Query: 1010 XXKTSEIEAENVSYFICNYAISMPNLVVEDAISKFESLHEKLDVKPSSISYAKLIMFCCD 831
              K  +  AE +S FI  YA +MPNL VED I KF+ LH +L V PSS SY KL+ +CCD
Sbjct: 351  AFKACDYGAEEISDFIFYYASNMPNLAVEDVILKFKDLHAQLVVTPSSTSYNKLVTYCCD 410

Query: 830  SLKVHAALGIIDKMCQLDLALSVEIFYPILHAVEDSCELDLAHPIYSVIRRHNLKPTIKA 651
            S KVHAAL I+D+MC+  L LS+E+F+ IL A E+S E +L H IYSVI   +L+P  + 
Sbjct: 411  SFKVHAALDIVDQMCEAGLTLSIEMFHSILRASEESFEFNLVHRIYSVICHQSLEPNCET 470

Query: 650  MEILINLSVKMKDFEGAYNMLRDLNEMSLKPTPGMYNAILAGYFREKKFHCGELVLNQMK 471
              I+INL VKMKDF+GAY++L+D+ +++L PT G+YNAI+ GYFREK  + G +VL QM 
Sbjct: 471  FRIMINLHVKMKDFDGAYDLLKDMKKINLTPTAGIYNAIMGGYFREKNIYGGLMVLKQMG 530

Query: 470  LADVKPDSLTFSYLIGNSESEEDIIKYFEELQSAKVEATKHIYMALINACANYLQLEKAK 291
             ADVKPDS TF YL+ N E EEDIIKY+E+L+ A V+ TKH++MALINA A+  Q EKAK
Sbjct: 531  DADVKPDSQTFCYLLNNCECEEDIIKYYEKLKCAGVQVTKHVFMALINAYASCGQFEKAK 590

Query: 290  QGVLDEGIPSENINGIESGLVSSSLASCGKLSDALKIYEEIQQTGCNLEPKAAISLIEHL 111
            Q VLD+G+P +++N I+S LV S+LA  G++SDA  IYEEI+ +G NLEPKA I LIE+ 
Sbjct: 591  QVVLDKGVPIKSLNEIKSVLV-SALALHGQISDAFDIYEEIKNSGFNLEPKAIILLIEYH 649

Query: 110  QSEVDLSRMLQFLEELKDPDFWFDGCERVVIYCIRH 3
            QSE DL+R+LQ LEEL DPD+  +G  R+++YC+R+
Sbjct: 650  QSEGDLTRLLQLLEELNDPDYRVEGSCRILLYCVRY 685


>ref|XP_002522838.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223537922|gb|EEF39536.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 867

 Score =  577 bits (1487), Expect = e-162
 Identities = 311/629 (49%), Positives = 423/629 (67%)
 Frame = -1

Query: 1889 EESEADLFRAISGILGAKSAEVVGSCVLPASDVPNDGESQEKNLDIPWFXXXXXXXXXXX 1710
            E++  +L   IS ILG  S     S + P S   +  +S E   DIPWF           
Sbjct: 100  EDAAKELAEHISSILGDGS-----SAIAPDSQGTSSIKSLEIGFDIPWFQNLSHGNVN-- 152

Query: 1709 XXXXXSDRVKVTSRVRKEKWVFKNSQSHRFQRLVTMCGKKMGADATLAVFGKLRRETGLK 1530
                   + K  SR RK+KW+F + Q  RF +L+ M  +K+G++A L +F KL RETG+K
Sbjct: 153  ------QQRKEVSRTRKQKWIFSSGQKTRFDQLIRMIDQKLGSEAILELFSKLGRETGVK 206

Query: 1529 EYKTLIRFCVEKAKESENEEDSLDHIHRAYQLFRSMREQGFQVEDEFFGPLLLYLVDMRM 1350
            EY  LI+  +EKA+ S++++ +L HI  A++  + M+E+GF++++E + P L+YL+DM M
Sbjct: 207  EYNALIKILIEKARASDDKDVALKHIIVAFEFLKLMKEEGFRIDEETYSPFLMYLIDMGM 266

Query: 1349 VEEFHFFSEAIKDGNSAMLPRLGYYEMLLWITVKNEDKVQELCNSVVFDADGDGFHLAEN 1170
            V EF  F EAI++ +S+ L RLGYYEMLL I V NE+K++ELC+ +  +   + F L EN
Sbjct: 267  VTEFGSFCEAIEENDSSSLARLGYYEMLLCIRVNNEEKIRELCSYIANNNLNETFDLLEN 326

Query: 1169 YLLAFCETDRKKEILQLLEIVDISKVSSLNYVSSIFESMGRQXXXXXXXXXXXXXKTSEI 990
            YLLA CE DRK E+LQLLEIVDI+KVSSL ++ SIF S+GR              K  + 
Sbjct: 327  YLLALCERDRKNELLQLLEIVDITKVSSLEHMVSIFNSLGRLLLESLAKKFLSTFKECDY 386

Query: 989  EAENVSYFICNYAISMPNLVVEDAISKFESLHEKLDVKPSSISYAKLIMFCCDSLKVHAA 810
            + EN+S  I +YA S+PNL VEDAI KF++LH  L++ PSS SY KLI++ CD LKVHAA
Sbjct: 387  DTENISTLIFSYATSVPNLAVEDAILKFKNLHVMLEMPPSSKSYEKLIIYSCDLLKVHAA 446

Query: 809  LGIIDKMCQLDLALSVEIFYPILHAVEDSCELDLAHPIYSVIRRHNLKPTIKAMEILINL 630
            L I+D+MC+ DL LS+++   IL A E+S E +L   IYS+I  HNL P  +    +I L
Sbjct: 447  LDIVDQMCKADLTLSIDVLNSILRACEESFEFNLVQQIYSLICHHNLTPNNETFRSMIKL 506

Query: 629  SVKMKDFEGAYNMLRDLNEMSLKPTPGMYNAILAGYFREKKFHCGELVLNQMKLADVKPD 450
             VKMKDF GA++ML DL +  L PT  MYNAI+AG FREK  + G +VL +M+LADVKPD
Sbjct: 507  RVKMKDFCGAHDMLDDLKKFKLTPTASMYNAIMAGCFREKNINGGLMVLKKMELADVKPD 566

Query: 449  SLTFSYLIGNSESEEDIIKYFEELQSAKVEATKHIYMALINACANYLQLEKAKQGVLDEG 270
            S T+S LI N  SE  I KY+EEL+   +  +K I+MALINA A   Q EKAKQ +LD+G
Sbjct: 567  SQTYSNLIANCNSENQISKYYEELKFVGIHVSKQIFMALINAYATCGQFEKAKQVLLDKG 626

Query: 269  IPSENINGIESGLVSSSLASCGKLSDALKIYEEIQQTGCNLEPKAAISLIEHLQSEVDLS 90
            IP EN+  I+S LV S+LAS G++SDAL +YEEI++ G N+EPK+ I LIEH QSE +LS
Sbjct: 627  IPIENVIEIKSALV-SALASHGQMSDALVVYEEIKEAGGNMEPKSVICLIEHYQSEGELS 685

Query: 89   RMLQFLEELKDPDFWFDGCERVVIYCIRH 3
            R+L+ LEEL+DP++  DGC RV+++CIR+
Sbjct: 686  RLLKLLEELQDPNYCVDGCCRVMLWCIRN 714


>ref|XP_002319806.1| predicted protein [Populus trichocarpa] gi|222858182|gb|EEE95729.1|
            predicted protein [Populus trichocarpa]
          Length = 784

 Score =  570 bits (1470), Expect = e-160
 Identities = 296/601 (49%), Positives = 410/601 (68%)
 Frame = -1

Query: 1805 PASDVPNDGESQEKNLDIPWFXXXXXXXXXXXXXXXXSDRVKVTSRVRKEKWVFKNSQSH 1626
            P S+   D E  +K L+IPW                     K  SR RK+KWVF  SQ +
Sbjct: 29   PDSEEAEDEELVKKALEIPWLSRLKNNNIGMLR--------KDVSRERKQKWVFTYSQVN 80

Query: 1625 RFQRLVTMCGKKMGADATLAVFGKLRRETGLKEYKTLIRFCVEKAKESENEEDSLDHIHR 1446
               R+V  C  K+G D  + VFGKL RETGLKE+  L++  +E+ +E+++E  ++ HI  
Sbjct: 81   HINRIVDTCADKLGTDNAMEVFGKLGRETGLKEFNALMKKYIEQCRETDDESVAMKHISA 140

Query: 1445 AYQLFRSMREQGFQVEDEFFGPLLLYLVDMRMVEEFHFFSEAIKDGNSAMLPRLGYYEML 1266
              QLF+SM+EQGF +E+E +GP L+ L+D  MVEEFHFFS+ IKD N +   RLGYY+ML
Sbjct: 141  VLQLFKSMKEQGFSIEEETYGPFLILLIDKGMVEEFHFFSDIIKDTNPSKNARLGYYDML 200

Query: 1265 LWITVKNEDKVQELCNSVVFDADGDGFHLAENYLLAFCETDRKKEILQLLEIVDISKVSS 1086
            L+I V +E+K+QELCN +  D   +   L ENYLLA CE+D+K  +LQLLE +DI+K SS
Sbjct: 201  LYIGVNDEEKIQELCNYICIDDGDNNISLRENYLLALCESDQKNYLLQLLETMDITKFSS 260

Query: 1085 LNYVSSIFESMGRQXXXXXXXXXXXXXKTSEIEAENVSYFICNYAISMPNLVVEDAISKF 906
            L++++SIF+S+GR              K+ +  AE++S  I +YA S+PNLVVED +SKF
Sbjct: 261  LDHLASIFKSLGRLSLESFAKKFLLVLKSCDYGAEDISTLIFSYATSIPNLVVEDVVSKF 320

Query: 905  ESLHEKLDVKPSSISYAKLIMFCCDSLKVHAALGIIDKMCQLDLALSVEIFYPILHAVED 726
            ++LH  + + PSS SY KL+++ C+ LKVH AL I+D+MC+  L +S+   + IL+A E+
Sbjct: 321  KTLHMIMKMSPSSTSYEKLVVYNCNLLKVHLALDIVDQMCKEGLTISINTIHSILNASEE 380

Query: 725  SCELDLAHPIYSVIRRHNLKPTIKAMEILINLSVKMKDFEGAYNMLRDLNEMSLKPTPGM 546
            S + +L   IYS+I   +L P  +    +I+LSVKMKDFEGAY +L DL +++L PT  M
Sbjct: 381  SFDFNLVRRIYSLIYHLDLTPNNETFRSMISLSVKMKDFEGAYGLLDDLKKLNLAPTASM 440

Query: 545  YNAILAGYFREKKFHCGELVLNQMKLADVKPDSLTFSYLIGNSESEEDIIKYFEELQSAK 366
            YNAI+ GYFREK      +VL QMKLADVKPDS ++SYLI N  +EE+IIKY+EE++ A 
Sbjct: 441  YNAIMGGYFREKNIRGALMVLKQMKLADVKPDSSSYSYLISNCNNEEEIIKYYEEMKVAG 500

Query: 365  VEATKHIYMALINACANYLQLEKAKQGVLDEGIPSENINGIESGLVSSSLASCGKLSDAL 186
            ++ +K I+MALINA A   Q EKAKQ +LD+  P +++N I S LV S+LAS G+++DAL
Sbjct: 501  IQVSKQIFMALINAYATCGQFEKAKQVLLDKEFPIKHLNEIRSVLV-SALASHGQMTDAL 559

Query: 185  KIYEEIQQTGCNLEPKAAISLIEHLQSEVDLSRMLQFLEELKDPDFWFDGCERVVIYCIR 6
             +YEE++Q G NLEPKA ISLIEH+ SE + SR+L+ LEEL D ++W DGC RV++YCIR
Sbjct: 560  NLYEEMKQAGSNLEPKAVISLIEHVDSEGEQSRLLKLLEELDDHNYWVDGCFRVILYCIR 619

Query: 5    H 3
            +
Sbjct: 620  N 620


>ref|XP_003539564.1| PREDICTED: pentatricopeptide repeat-containing protein At4g04790,
            mitochondrial [Glycine max]
          Length = 755

 Score =  542 bits (1396), Expect = e-151
 Identities = 273/558 (48%), Positives = 391/558 (70%)
 Frame = -1

Query: 1682 KVTSRVRKEKWVFKNSQSHRFQRLVTMCGKKMGADATLAVFGKLRRETGLKEYKTLIRFC 1503
            K  SR +K+K VF  +Q  RFQ+LV +C + +G +AT+ +FGK+ RE  +K Y TL+  C
Sbjct: 113  KEQSRKKKQKCVFDFTQESRFQKLVEVCARILGPEATIELFGKVGREPDVKGYNTLVEMC 172

Query: 1502 VEKAKESENEEDSLDHIHRAYQLFRSMREQGFQVEDEFFGPLLLYLVDMRMVEEFHFFSE 1323
            ++KA+ +++++ ++  + + + LF+SMREQG +++++ + PLLLYL+DM MVEEF FF  
Sbjct: 173  IDKARGTDDKDIAIQELGKVFNLFKSMREQGLELQEQTYRPLLLYLIDMCMVEEFQFFCV 232

Query: 1322 AIKDGNSAMLPRLGYYEMLLWITVKNEDKVQELCNSVVFDADGDGFHLAENYLLAFCETD 1143
             I+D N + + RLGYYEML+W+   NE+K+Q +C+++  +   D   + ENYLLA CE++
Sbjct: 233  VIEDENPSSVARLGYYEMLMWLKDNNEEKIQGICDNIAENKGEDTSDIQENYLLALCESE 292

Query: 1142 RKKEILQLLEIVDISKVSSLNYVSSIFESMGRQXXXXXXXXXXXXXKTSEIEAENVSYFI 963
            R +EIL+LLEI+DI  +SS   V+ +F+++GR              KTS+ EA+N++ FI
Sbjct: 293  RMEEILKLLEIIDIKNLSSAESVAKVFQALGRLLLEPVAEKFLLDFKTSDHEADNITDFI 352

Query: 962  CNYAISMPNLVVEDAISKFESLHEKLDVKPSSISYAKLIMFCCDSLKVHAALGIIDKMCQ 783
             +YA+S+P+L V+D I KF+ LH++L+V PSS SY KLI+  C  LKVH AL I+D+MC+
Sbjct: 353  ASYAVSIPDLSVKDVIKKFKDLHQRLEVSPSSSSYEKLILHSCALLKVHVALDIVDEMCE 412

Query: 782  LDLALSVEIFYPILHAVEDSCELDLAHPIYSVIRRHNLKPTIKAMEILINLSVKMKDFEG 603
              L LS ++ + IL   +D+ E +L H I+S I R+NL+   +    +I+L +KMKD EG
Sbjct: 413  AGLTLSTKVLHSILQICDDTSEYNLVHRIFSTIHRYNLESNDETFRSMIDLFLKMKDIEG 472

Query: 602  AYNMLRDLNEMSLKPTPGMYNAILAGYFREKKFHCGELVLNQMKLADVKPDSLTFSYLIG 423
            AY ML DL +++LKP+PGMYNAIL   FREK    G  VL  M+ ADVKPDS TFSYLI 
Sbjct: 473  AYKMLDDLGKLNLKPSPGMYNAILEECFREKNISDGVRVLEHMQCADVKPDSQTFSYLIS 532

Query: 422  NSESEEDIIKYFEELQSAKVEATKHIYMALINACANYLQLEKAKQGVLDEGIPSENINGI 243
            NSE+EEDI+KY+EEL+ + + ATK I+MAL+NA A   QLEKAK+ +LD  IP +++N I
Sbjct: 533  NSETEEDIVKYYEELKQSGIVATKQIFMALVNAYAACGQLEKAKKVILDPLIPPKSLNQI 592

Query: 242  ESGLVSSSLASCGKLSDALKIYEEIQQTGCNLEPKAAISLIEHLQSEVDLSRMLQFLEEL 63
            + G + S LAS GKLS+AL IYEEI+Q+G  LE K   SLIEH  SE +L R+L  L+EL
Sbjct: 593  K-GFLVSVLASHGKLSEALVIYEEIKQSGHKLEAKEVTSLIEHTHSEGELDRLLLLLKEL 651

Query: 62   KDPDFWFDGCERVVIYCI 9
             D D+W D C R+++YCI
Sbjct: 652  DDTDYWNDACCRIILYCI 669


>ref|XP_003541878.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21880,
            mitochondrial-like [Glycine max]
          Length = 705

 Score =  506 bits (1303), Expect = e-141
 Identities = 267/565 (47%), Positives = 382/565 (67%), Gaps = 7/565 (1%)
 Frame = -1

Query: 1682 KVTSRVRKEKWVFKNSQSHRFQRLVTMCGKKMGADATLAVFGKLRRETGLKEYKTLIRFC 1503
            K  SR +K+K VF  +Q  RFQ+L+ +C + +G +AT+ +FGK+ RE G+K Y TL+  C
Sbjct: 69   KEQSRKKKQKCVFDFTQESRFQKLIEVCARILGPEATIELFGKVGREPGVKGYNTLVEMC 128

Query: 1502 VEKAKESENEEDSLDHIHRAYQLFRSMREQGFQVEDEFFGPLLLYLVDMRMVEEFHFFSE 1323
            ++KA+ +++E+ +++ + + + LF+S REQG +++++ +  LLLYL+DMRMVEEF FF  
Sbjct: 129  IDKARGTDDEDITIEELGKVFNLFKSTREQGLELQEQTYRLLLLYLIDMRMVEEFKFFCV 188

Query: 1322 AIKDGNSAMLPRLGYYEMLLWITVKNEDKVQELCNSVVFDADGDGFHLAENYLLAFCETD 1143
             IKD N + + RLGYYEMLLW+   NE+K+Q +C+ +  + D D   +        CE++
Sbjct: 189  VIKDENPSSVTRLGYYEMLLWLKDNNEEKIQGICDYIA-ENDEDTSDI--------CESE 239

Query: 1142 RKKEILQLLEIVDISKVSSLNYVSSIFESMGRQXXXXXXXXXXXXXKTSEIEAENVSYFI 963
            R KEIL+LLEI+DI  +SS   V+ +F+++GR              KTS+ EA+N++ FI
Sbjct: 240  RMKEILKLLEIIDIKNLSSAESVAKVFQALGRLLLEPLAEKFLLDFKTSDHEADNITNFI 299

Query: 962  CNYAISMPNL-------VVEDAISKFESLHEKLDVKPSSISYAKLIMFCCDSLKVHAALG 804
             +YA+S+P+L       +VED I KF+ LH++L+V PSS SY KLI+  C  L+VH AL 
Sbjct: 300  ASYAVSIPDLSIRNISQMVEDVIKKFKDLHQRLEVSPSSSSYEKLILHSCALLEVHVALD 359

Query: 803  IIDKMCQLDLALSVEIFYPILHAVEDSCELDLAHPIYSVIRRHNLKPTIKAMEILINLSV 624
            I+D+MC+  L LS +  + IL   +D+ E +L H I+S IR +NL+   +    +I+  +
Sbjct: 360  IVDEMCEAGLTLSTKALHSILQICDDTSEYNLVHRIFSTIRHYNLESDDETFRSMIDFFL 419

Query: 623  KMKDFEGAYNMLRDLNEMSLKPTPGMYNAILAGYFREKKFHCGELVLNQMKLADVKPDSL 444
            KMKD EGAY ML DL E++LK TPGMYNAI+A  F+EK    G  VL  M+ ADVKPDS 
Sbjct: 420  KMKDIEGAYKMLDDLEELNLKLTPGMYNAIMAECFQEKNISDGVRVLEHMQCADVKPDSQ 479

Query: 443  TFSYLIGNSESEEDIIKYFEELQSAKVEATKHIYMALINACANYLQLEKAKQGVLDEGIP 264
            TFS LI NSE++EDI KY+EEL+ + + ATK I+MALINA A   QLEKAK+ +LD  IP
Sbjct: 480  TFSCLISNSETKEDIAKYYEELKQSGIVATKQIFMALINAYAACGQLEKAKKVILDPLIP 539

Query: 263  SENINGIESGLVSSSLASCGKLSDALKIYEEIQQTGCNLEPKAAISLIEHLQSEVDLSRM 84
             +++N I+ G + S LAS G+LS AL IY++I+Q+G  LE K   SLIEH  SE +L R+
Sbjct: 540  PKSLNQIK-GFLVSVLASHGQLSGALVIYDKIKQSGHKLEAKEITSLIEHTHSEGELDRL 598

Query: 83   LQFLEELKDPDFWFDGCERVVIYCI 9
            L  LEEL D D+W D C R+++YCI
Sbjct: 599  LLLLEELDDTDYWNDACCRIILYCI 623