BLASTX nr result

ID: Cimicifuga21_contig00007989 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00007989
         (1268 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002529740.1| ribosome biogenesis protein brix, putative [...   504   e-140
ref|XP_002270029.1| PREDICTED: ribosome biogenesis protein BRX1 ...   491   e-136
ref|XP_002317510.1| predicted protein [Populus trichocarpa] gi|2...   491   e-136
emb|CAN61504.1| hypothetical protein VITISV_011736 [Vitis vinifera]   490   e-136
ref|XP_003552625.1| PREDICTED: ribosome biogenesis protein BRX1-...   487   e-135

>ref|XP_002529740.1| ribosome biogenesis protein brix, putative [Ricinus communis]
            gi|223530781|gb|EEF32647.1| ribosome biogenesis protein
            brix, putative [Ricinus communis]
          Length = 312

 Score =  504 bits (1298), Expect = e-140
 Identities = 241/312 (77%), Positives = 260/312 (83%)
 Frame = -1

Query: 1256 MAKKRKHSXXXXXXXXXXXXXXXPRPKRTLLGWKDKVDVKPTNSAFFRNKEKVLVTCSRR 1077
            M KKRKHS                RPKRTLLGWKDK +VKPT +  FRNKEKVLVTCSRR
Sbjct: 1    MGKKRKHSETEVAAPEKKDESAAERPKRTLLGWKDKSEVKPTETQGFRNKEKVLVTCSRR 60

Query: 1076 IIYRYRHLMLNVVSILPHCKKDNKIESKQSKGAALNEIVELRNCSSCLFFECRKQKDLYL 897
            I YRYRHLMLN+VS+LPHCKKDNK+ESK SKG ALNE+VEL+  SSCLFFECRK KDLYL
Sbjct: 61   INYRYRHLMLNIVSLLPHCKKDNKVESKSSKGMALNELVELKGSSSCLFFECRKHKDLYL 120

Query: 896  WMAKCPNGPSVKFLVNAVHTMEELKLTGNHLKGSRPLLTFSASFDKDPHWKLLKEIIMQI 717
            WMAKCP GPSVKFLVNAVHTMEELKLTGNHLKGSRP+LTFSA+FDKD HWKLLKE++MQI
Sbjct: 121  WMAKCPGGPSVKFLVNAVHTMEELKLTGNHLKGSRPILTFSANFDKDAHWKLLKEMLMQI 180

Query: 716  FGIPKDHRKAKPYHDHVFVFSIVDDHIWFRNYQISVPHNEADKVDRGGLDKMTLVEVGPR 537
            FG PK+HRK+KPYHDHVFVFSIVDDHIWFRNYQISVPHNE+DKV RGGLDKMTLVEVGPR
Sbjct: 181  FGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQISVPHNESDKVVRGGLDKMTLVEVGPR 240

Query: 536  FCLNPIKIFGGSFGGPTLYENPFYVSPNQIRALEXXXXXXXXXXXXXXXXXXKMHEETNT 357
            FCLNPIKIFGGSFGGPTLYENPFY+SPNQIRALE                  KMHE +N 
Sbjct: 241  FCLNPIKIFGGSFGGPTLYENPFYISPNQIRALEKRKKAGKFEKKVKAKTRRKMHEMSNP 300

Query: 356  LEPDEFADLWKD 321
            L PDEFAD+W++
Sbjct: 301  LVPDEFADMWRE 312


>ref|XP_002270029.1| PREDICTED: ribosome biogenesis protein BRX1 homolog [Vitis vinifera]
            gi|297744237|emb|CBI37207.3| unnamed protein product
            [Vitis vinifera]
          Length = 316

 Score =  491 bits (1265), Expect = e-136
 Identities = 235/316 (74%), Positives = 258/316 (81%), Gaps = 4/316 (1%)
 Frame = -1

Query: 1256 MAKKRKHSXXXXXXXXXXXXXXXPRPKRTLLGWKDKVDVKP----TNSAFFRNKEKVLVT 1089
            M KKRKHS                RPKRTLLGWKD    +     ++S  FRNKEKVLVT
Sbjct: 1    MGKKRKHSEANVAEPPKKDSDAPERPKRTLLGWKDPTPTETKEIESSSPIFRNKEKVLVT 60

Query: 1088 CSRRIIYRYRHLMLNVVSILPHCKKDNKIESKQSKGAALNEIVELRNCSSCLFFECRKQK 909
            CSRRI YRYRHLML++VS+LPH KKDNK+ESK+SKGA LNE+VEL+NCSSCLFFECRKQK
Sbjct: 61   CSRRISYRYRHLMLSIVSLLPHAKKDNKVESKESKGATLNELVELKNCSSCLFFECRKQK 120

Query: 908  DLYLWMAKCPNGPSVKFLVNAVHTMEELKLTGNHLKGSRPLLTFSASFDKDPHWKLLKEI 729
            DLYLWMAKCPNGPSVKF+V+AVHTMEELKLTGNHLKGSRPLLTFS +FDKDPHWKLLKE+
Sbjct: 121  DLYLWMAKCPNGPSVKFMVDAVHTMEELKLTGNHLKGSRPLLTFSTNFDKDPHWKLLKEM 180

Query: 728  IMQIFGIPKDHRKAKPYHDHVFVFSIVDDHIWFRNYQISVPHNEADKVDRGGLDKMTLVE 549
            I QIFG PK+HRKAKPYHDHVF FS+ DDHIWFRNYQISVPHNE+DKVDRGGLDK+TLVE
Sbjct: 181  ITQIFGTPKEHRKAKPYHDHVFAFSLADDHIWFRNYQISVPHNESDKVDRGGLDKITLVE 240

Query: 548  VGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQIRALEXXXXXXXXXXXXXXXXXXKMHE 369
            VGPRFCLNPIKIFGGSFGGPTLYENPFY+SPN+IRAL+                  KMHE
Sbjct: 241  VGPRFCLNPIKIFGGSFGGPTLYENPFYISPNEIRALKKRKAAGKYAKKVKAKTRRKMHE 300

Query: 368  ETNTLEPDEFADLWKD 321
              N LE DEFAD+WK+
Sbjct: 301  LENPLEADEFADMWKE 316


>ref|XP_002317510.1| predicted protein [Populus trichocarpa] gi|222860575|gb|EEE98122.1|
            predicted protein [Populus trichocarpa]
          Length = 317

 Score =  491 bits (1264), Expect = e-136
 Identities = 239/317 (75%), Positives = 259/317 (81%), Gaps = 5/317 (1%)
 Frame = -1

Query: 1256 MAKKRKHSXXXXXXXXXXXXXXXPRPKRTLLGWKDKVDVKPTNS-----AFFRNKEKVLV 1092
            M KKRKHS                RPKRTLLGWKDK + K T S       FRNKEKVLV
Sbjct: 1    MGKKRKHSETQVIEPAKKDESETERPKRTLLGWKDKPEEKETESLPPHQGGFRNKEKVLV 60

Query: 1091 TCSRRIIYRYRHLMLNVVSILPHCKKDNKIESKQSKGAALNEIVELRNCSSCLFFECRKQ 912
            TCSRRI YRYRHLMLN+VS+LPHCKKD+K+ES  SKGA LNE+VEL+NCSS LFFECRK 
Sbjct: 61   TCSRRINYRYRHLMLNLVSLLPHCKKDSKVESTSSKGATLNELVELKNCSSSLFFECRKH 120

Query: 911  KDLYLWMAKCPNGPSVKFLVNAVHTMEELKLTGNHLKGSRPLLTFSASFDKDPHWKLLKE 732
            KDLYLWM KCP+GPSVKFLVNAVHTMEELKLTGNHLKGSRPLLTFSA+FDKD HWKLLKE
Sbjct: 121  KDLYLWMVKCPSGPSVKFLVNAVHTMEELKLTGNHLKGSRPLLTFSANFDKDAHWKLLKE 180

Query: 731  IIMQIFGIPKDHRKAKPYHDHVFVFSIVDDHIWFRNYQISVPHNEADKVDRGGLDKMTLV 552
            +I+QIFGIPKDHRK+KP++DHVFVFSIVDDHIWFRNYQISVPHNE DK+ RGGLDKMTLV
Sbjct: 181  MIIQIFGIPKDHRKSKPFYDHVFVFSIVDDHIWFRNYQISVPHNETDKMARGGLDKMTLV 240

Query: 551  EVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQIRALEXXXXXXXXXXXXXXXXXXKMH 372
            EVGPRFCLNPIKIFGGSFGGPTLYENPF++SPNQIRALE                  KMH
Sbjct: 241  EVGPRFCLNPIKIFGGSFGGPTLYENPFFISPNQIRALEKKQKAGKFAKKVKAKTRRKMH 300

Query: 371  EETNTLEPDEFADLWKD 321
            E +N LEPDEFAD+WK+
Sbjct: 301  ELSNPLEPDEFADMWKE 317


>emb|CAN61504.1| hypothetical protein VITISV_011736 [Vitis vinifera]
          Length = 316

 Score =  490 bits (1261), Expect = e-136
 Identities = 236/316 (74%), Positives = 259/316 (81%), Gaps = 4/316 (1%)
 Frame = -1

Query: 1256 MAKKRKHSXXXXXXXXXXXXXXXPRPKRTLLGWKDKV--DVKPTNSA--FFRNKEKVLVT 1089
            M KKRKHS                RPKRTLLGWKD    + K T S+   FRNKEKVLVT
Sbjct: 1    MGKKRKHSEANVAEPPKKDSDAPERPKRTLLGWKDPTPTETKETESSSPIFRNKEKVLVT 60

Query: 1088 CSRRIIYRYRHLMLNVVSILPHCKKDNKIESKQSKGAALNEIVELRNCSSCLFFECRKQK 909
            CSRRI YRYRHLML++VS+LPH KKDNK+ESK+SKGA LNE+VEL+NCSSCLFFECRKQK
Sbjct: 61   CSRRISYRYRHLMLSIVSLLPHAKKDNKVESKESKGATLNELVELKNCSSCLFFECRKQK 120

Query: 908  DLYLWMAKCPNGPSVKFLVNAVHTMEELKLTGNHLKGSRPLLTFSASFDKDPHWKLLKEI 729
            DLYLWMAKCP+GPSVKF+V+AVHTMEELKLTGNHLKGSRPLLTFS +FDKDPHWKLLKE+
Sbjct: 121  DLYLWMAKCPSGPSVKFMVDAVHTMEELKLTGNHLKGSRPLLTFSTNFDKDPHWKLLKEM 180

Query: 728  IMQIFGIPKDHRKAKPYHDHVFVFSIVDDHIWFRNYQISVPHNEADKVDRGGLDKMTLVE 549
            I QIFG PK+HRKAKPYHDHVF FS+ DDHIWFRNYQISVPHNE+DKVDRGGLDK+TLVE
Sbjct: 181  ITQIFGTPKEHRKAKPYHDHVFAFSLADDHIWFRNYQISVPHNESDKVDRGGLDKITLVE 240

Query: 548  VGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQIRALEXXXXXXXXXXXXXXXXXXKMHE 369
            VGPRFCLNPIKIFGGSFGGPTLYENPFY+SPN+IRAL+                  KMHE
Sbjct: 241  VGPRFCLNPIKIFGGSFGGPTLYENPFYISPNEIRALKKRKAAGKYAKKVKAKTRRKMHE 300

Query: 368  ETNTLEPDEFADLWKD 321
              N LE DEFAD+WK+
Sbjct: 301  LENPLEADEFADMWKE 316


>ref|XP_003552625.1| PREDICTED: ribosome biogenesis protein BRX1-like [Glycine max]
          Length = 316

 Score =  487 bits (1254), Expect = e-135
 Identities = 237/316 (75%), Positives = 261/316 (82%), Gaps = 4/316 (1%)
 Frame = -1

Query: 1256 MAKKRKHSXXXXXXXXXXXXXXXP-RPKRTLLGWKDKVDVKPTNSA---FFRNKEKVLVT 1089
            M KKRKHS               P RP RTLLGWKDK  V+  N+A    FRNKEK+LVT
Sbjct: 1    MGKKRKHSETTQSVAQPKKEDAAPERPARTLLGWKDKNQVEDNNNADSPIFRNKEKLLVT 60

Query: 1088 CSRRIIYRYRHLMLNVVSILPHCKKDNKIESKQSKGAALNEIVELRNCSSCLFFECRKQK 909
            CSRRI YRYRHLMLN+V++LPHCKKDNK+ESK++KGA LNE+VEL+NCSSCLFFECRK K
Sbjct: 61   CSRRINYRYRHLMLNLVTLLPHCKKDNKVESKETKGATLNELVELKNCSSCLFFECRKHK 120

Query: 908  DLYLWMAKCPNGPSVKFLVNAVHTMEELKLTGNHLKGSRPLLTFSASFDKDPHWKLLKEI 729
            DLYLWMAKCPNGPSVKFLV+AVHTMEELKLTGNHL+GSRP+LTFSA+F+KD HWKLLKE+
Sbjct: 121  DLYLWMAKCPNGPSVKFLVSAVHTMEELKLTGNHLQGSRPILTFSANFEKDAHWKLLKEM 180

Query: 728  IMQIFGIPKDHRKAKPYHDHVFVFSIVDDHIWFRNYQISVPHNEADKVDRGGLDKMTLVE 549
            ++QIF  PKDHRKAKP+HDHVFVFSIVDDHIWFRNYQISV HNEADK+ RGGLDKMTL+E
Sbjct: 181  LLQIFETPKDHRKAKPFHDHVFVFSIVDDHIWFRNYQISVHHNEADKLPRGGLDKMTLIE 240

Query: 548  VGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQIRALEXXXXXXXXXXXXXXXXXXKMHE 369
            VGPRFCLNPIKIFGGSFGGPTLYENP YVSPNQIRALE                  KMHE
Sbjct: 241  VGPRFCLNPIKIFGGSFGGPTLYENPLYVSPNQIRALEKKKKAGKFAKKVKAKTRRKMHE 300

Query: 368  ETNTLEPDEFADLWKD 321
             +N LEPDEFAD+WKD
Sbjct: 301  MSNPLEPDEFADMWKD 316


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