BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00007960
         (3318 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D sub...  1369   0.0  
emb|CBI21137.3| unnamed protein product [Vitis vinifera]             1352   0.0  
gb|AAY68206.1| RNA polymerase IV second largest subunit [Solanum...  1298   0.0  
ref|XP_002515428.1| DNA-directed RNA polymerase subunit, putativ...  1290   0.0  
ref|XP_004145500.1| PREDICTED: DNA-directed RNA polymerase D sub...  1281   0.0  

>ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Vitis
            vinifera]
          Length = 1198

 Score = 1369 bits (3543), Expect = 0.0
 Identities = 673/1000 (67%), Positives = 804/1000 (80%), Gaps = 9/1000 (0%)
 Frame = -2

Query: 2975 MNKLCKEASKSFFSEYGLISHQINSYNDFVGNGIQKLFDSIGEINVEPGYDPSKKGGEGG 2796
            +   CK+ + SFF+EYGLI HQINS+NDF+ NGIQ++FDS GEI VEPGYDPSK+G EG 
Sbjct: 46   LKTFCKKVAVSFFNEYGLIQHQINSFNDFIKNGIQRVFDSFGEIPVEPGYDPSKRG-EGD 104

Query: 2795 WRRATIKFGKVSLDKPTFWTGDKPVSSGKEYLKFLPRHARLQHMTYSARMRVEIDYEVYT 2616
            WR A+++FGKV+L++P  W G+   S GKE L FLPRHARLQ+MTYS+RM+ ++ ++VYT
Sbjct: 105  WRYASVRFGKVTLERPRVWAGE---SDGKESLNFLPRHARLQNMTYSSRMKAQVHFQVYT 161

Query: 2615 LGKKSSDKFKTGKESE-IDKIIETKGNKEVVIGRIPVMVKSNYCWMNGNKKGDCDFDHGG 2439
                 SDK+KTGK+++ ++K +  + N++++IGRIPVMVKS  CWMNG ++GDC++DHGG
Sbjct: 162  QKLVRSDKYKTGKDNKYVEKKVIFEDNRDILIGRIPVMVKSELCWMNGVERGDCEYDHGG 221

Query: 2438 YFIIKGAEKTFVAQEQICLKRLWVSDNPNWNIAYRTEWKRLXXXXXXXXXXXESSHLQGT 2259
            YF+IKGAEKTF+AQEQICLKRLWVS NP W +AYR  WKR            E++   G 
Sbjct: 222  YFLIKGAEKTFIAQEQICLKRLWVSSNPTWMVAYRPIWKRKRVYVKLEPPKDENNR-GGE 280

Query: 2258 KVLNVYFLSCKIPLWVFLFALGMSSDKEIIEMIDIDXXXXXXXXXXXSTISYADADDQFE 2079
            KVL VYF S +IP+W+  FALG SSDKE++++ID +           ++I  AD + + +
Sbjct: 281  KVLTVYFSSTEIPIWILFFALGASSDKEVVDLIDFNIDDAGISNILVASIHEADREAEKK 340

Query: 2078 D--FRKGGNSLEIIEKMISKTKFPPKESTKECMDKYLIPSLSSLKQKALFVGYMVKCLLK 1905
               FR+ GN++  ++K++   KFPP ES +EC+ KYL P+ S +KQKA F+GYMVKCLL+
Sbjct: 341  GMYFRRQGNAISFVDKLVKSCKFPPGESIQECISKYLFPNFSGVKQKARFLGYMVKCLLQ 400

Query: 1904 TYTGERKCENRDDFRNKRLDLASELLERELRIHIRHAERRMVKFMQRDLYGNRALHPIDY 1725
             YTG RKC+NRDDFRNKRL+LA ELLERELR+HIRHAERRMVK MQR+LYG+R L PI+ 
Sbjct: 401  AYTGRRKCDNRDDFRNKRLELAGELLERELRVHIRHAERRMVKAMQRELYGDRDLRPIEN 460

Query: 1724 YFDASIITNGLSRAFSTGGWSHHLNRTERISGVVANLRRTNPLQMMSDLRKTRQQVRYTG 1545
            Y DASIITNGLSRAFSTG WSH   R ERISGVVA LRRTNPLQM +D+RKTRQQV+YTG
Sbjct: 461  YLDASIITNGLSRAFSTGQWSHPFKRMERISGVVATLRRTNPLQMTADMRKTRQQVQYTG 520

Query: 1544 KVGDARYPHPSHWGKLCFLSTSDGENSGLVKNMAVTGLVSTNLMEPSLDKLRECGMEEVA 1365
            KVGDARYPHPSHWGK+CFLST DGEN GLVKN+A+TGLVST +++P +DKL +CGME++ 
Sbjct: 521  KVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLAITGLVSTEVLDPLVDKLFDCGMEKLV 580

Query: 1364 DNPSPFSLKGKAKVFLNGEWVGVCGDSLAFVLALKNKRRSKKVPPQVEIKSDQQKGEVRI 1185
            D+ S   L GK KVFL+G+WVGVC D ++FV+ L+ KRR K++P QVEIK D+Q+GEVRI
Sbjct: 581  DDTST-KLSGKNKVFLDGDWVGVCEDPISFVVELRTKRRHKELPQQVEIKRDEQQGEVRI 639

Query: 1184 FSDSGRIMRPLLVVENLRKIKLCKG-DYNFNSLLNKXXXXXXXXXXXEDCQTAWGVKNLL 1008
            FSD+GRI+RPLLVVENL+K+K  KG D+ F SLL+K           EDC TAWG+K LL
Sbjct: 640  FSDAGRILRPLLVVENLKKVKTFKGDDFTFQSLLDKGIVELIGAEEEEDCSTAWGIKYLL 699

Query: 1007 SGDRD----YTHCELDSSFLLGLSCGIIPFPNHDHARRVLYQSEKHSQQAMGYSTTNPNI 840
             G  D    YTHCELD SFLLGLSCGIIP+ NHDHARRVLYQSEKHSQQA+G+STTNPNI
Sbjct: 700  KGHDDPPVKYTHCELDMSFLLGLSCGIIPYANHDHARRVLYQSEKHSQQAIGFSTTNPNI 759

Query: 839  RIDTLSHQLYYPQRPLFRTMISDCLGKSEYPLG-QNVHPKPEFYNGQNVILAVNVHQGYN 663
            R+DTLSHQLYYPQRPLFRTMISDCLGK  Y  G + + P+PE++NGQ  I+AVNVH GYN
Sbjct: 760  RVDTLSHQLYYPQRPLFRTMISDCLGKPGYSEGHKGIVPRPEYFNGQIAIVAVNVHLGYN 819

Query: 662  QEDSLVMNRASLERGMFRTEHIRCYKAEVDNXXXXXXXXXXXXXRIDFGKMPSKIGRVDS 483
            QEDSLVMNRASLERGMFR+EHIR YK+EVDN              + FGKM SKIGRVDS
Sbjct: 820  QEDSLVMNRASLERGMFRSEHIRSYKSEVDN-NESLDKKRKSEDSVHFGKMQSKIGRVDS 878

Query: 482  LDDDGFPFIGANLQTGDIVIGRCTESGADHSIKLKHTERGKVQKVILSANDEGKNFAAVS 303
            LDDDGFPFIGANLQ GDIVIGRC ESG DHSIKLKHTERG VQKV++SAND+GKNFA VS
Sbjct: 879  LDDDGFPFIGANLQNGDIVIGRCAESGVDHSIKLKHTERGMVQKVVVSANDDGKNFAVVS 938

Query: 302  LRQVRTPIVGDKFSSMHGQKGVVGLLESQENFPFTRQGIVPDIVINPHAFPTRQTPGQLL 123
            LRQVRTP +GDKFSSMHGQKGV+G LESQENFPFT QGIVPDIVINPHAFP+RQTPGQLL
Sbjct: 939  LRQVRTPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLL 998

Query: 122  EAALGKGIACGGLTRYATPFTTPSIDIITEQLHRAGYSRW 3
            EAALGKGIACGGL R+ATPF+T S+D I +QLHRAG+SRW
Sbjct: 999  EAALGKGIACGGLLRHATPFSTLSVDAIADQLHRAGFSRW 1038


>emb|CBI21137.3| unnamed protein product [Vitis vinifera]
          Length = 1220

 Score = 1352 bits (3499), Expect = 0.0
 Identities = 667/999 (66%), Positives = 796/999 (79%), Gaps = 8/999 (0%)
 Frame = -2

Query: 2975 MNKLCKEASKSFFSEYGLISHQINSYNDFVGNGIQKLFDSIGEINVEPGYDPSKKGGEGG 2796
            +   CK+ + SFF+EYGLI HQINS+NDF+ NGIQ++FDS GEI VEPGYDPSK+G EG 
Sbjct: 82   LKTFCKKVAVSFFNEYGLIQHQINSFNDFIKNGIQRVFDSFGEIPVEPGYDPSKRG-EGD 140

Query: 2795 WRRATIKFGKVSLDKPTFWTGDKPVSSGKEYLKFLPRHARLQHMTYSARMRVEIDYEVYT 2616
            WR A+++FGKV+L++P  W G+   S GKE L FLPRHARLQ+MTYS+RM+ ++ ++VYT
Sbjct: 141  WRYASVRFGKVTLERPRVWAGE---SDGKESLNFLPRHARLQNMTYSSRMKAQVHFQVYT 197

Query: 2615 LGKKSSDKFKTGKESE-IDKIIETKGNKEVVIGRIPVMVKSNYCWMNGNKKGDCDFDHGG 2439
                 SDK+KTGK+++ ++K +  + N++++IGRIPVMVKS  CWMNG ++GDC++DHGG
Sbjct: 198  QKLVRSDKYKTGKDNKYVEKKVIFEDNRDILIGRIPVMVKSELCWMNGVERGDCEYDHGG 257

Query: 2438 YFIIKGAEKTFVAQEQICLKRLWVSDNPNWNIAYRTEWKRLXXXXXXXXXXXESSHLQGT 2259
            YF+IKGAEKTF+AQEQICLKRLWVS NP W +AYR  WKR            E++   G 
Sbjct: 258  YFLIKGAEKTFIAQEQICLKRLWVSSNPTWMVAYRPIWKRKRVYVKLEPPKDENNR-GGE 316

Query: 2258 KVLNVYFLSCKIPLWVFLFALGMSSDKEIIEMIDIDXXXXXXXXXXXSTISYADADDQFE 2079
            KVL VYF S +IP+W+  FALG SSDKE++++ID +           ++I  AD + + +
Sbjct: 317  KVLTVYFSSTEIPIWILFFALGASSDKEVVDLIDFNIDDAGISNILVASIHEADREAEKK 376

Query: 2078 D--FRKGGNSLEIIEKMISKTKFPPKESTKECMDKYLIPSLSSLKQKALFVGYMVKCLLK 1905
               FR+ GN++  ++K++   KFPP ES +EC+ KYL P+ S +KQKA F+GYMVKCLL+
Sbjct: 377  GMYFRRQGNAISFVDKLVKSCKFPPGESIQECISKYLFPNFSGVKQKARFLGYMVKCLLQ 436

Query: 1904 TYTGERKCENRDDFRNKRLDLASELLERELRIHIRHAERRMVKFMQRDLYGNRALHPIDY 1725
             YTG RKC+NRDDFRNKRL+LA ELLERELR+HIRHAERRMVK MQR+LYG+R L PI+ 
Sbjct: 437  AYTGRRKCDNRDDFRNKRLELAGELLERELRVHIRHAERRMVKAMQRELYGDRDLRPIEN 496

Query: 1724 YFDASIITNGLSRAFSTGGWSHHLNRTERISGVVANLRRTNPLQMMSDLRKTRQQVRYTG 1545
            Y DASIITNGLSRAFSTG WSH   R ERISGVVA LRRTNPLQM +D+RKTRQQV+YTG
Sbjct: 497  YLDASIITNGLSRAFSTGQWSHPFKRMERISGVVATLRRTNPLQMTADMRKTRQQVQYTG 556

Query: 1544 KVGDARYPHPSHWGKLCFLSTSDGENSGLVKNMAVTGLVSTNLMEPSLDKLRECGMEEVA 1365
            KVGDARYPHPSHWGK+CFLST DGEN GLVKN+A+TGLVST +++P +DKL +CGME++ 
Sbjct: 557  KVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLAITGLVSTEVLDPLVDKLFDCGMEKLV 616

Query: 1364 DNPSPFSLKGKAKVFLNGEWVGVCGDSLAFVLALKNKRRSKKVPPQVEIKSDQQKGEVRI 1185
            D+ S   L GK KVFL+G+WVGVC D ++FV+ L+ KRR K++P QVEIK D+Q+GEVRI
Sbjct: 617  DDTST-KLSGKNKVFLDGDWVGVCEDPISFVVELRTKRRHKELPQQVEIKRDEQQGEVRI 675

Query: 1184 FSDSGRIMRPLLVVENLRKIKLCKG-DYNFNSLLNKXXXXXXXXXXXEDCQTAWGVKNLL 1008
            FSD+GRI+RPLLVVENL+K+K  KG D+ F SLL+K           EDC TAWG+K LL
Sbjct: 676  FSDAGRILRPLLVVENLKKVKTFKGDDFTFQSLLDKGIVELIGAEEEEDCSTAWGIKYLL 735

Query: 1007 SGDRD----YTHCELDSSFLLGLSCGIIPFPNHDHARRVLYQSEKHSQQAMGYSTTNPNI 840
             G  D    YTHCELD SFLLGLSCGIIP+ NHDHARRVLYQSEKHSQQA+G+STTNPNI
Sbjct: 736  KGHDDPPVKYTHCELDMSFLLGLSCGIIPYANHDHARRVLYQSEKHSQQAIGFSTTNPNI 795

Query: 839  RIDTLSHQLYYPQRPLFRTMISDCLGKSEYPLGQNVHPKPEFYNGQNVILAVNVHQGYNQ 660
            R+DTLSHQLYYPQRPLFRTMISD              P+PE++NGQ  I+AVNVH GYNQ
Sbjct: 796  RVDTLSHQLYYPQRPLFRTMISDL-------------PRPEYFNGQIAIVAVNVHLGYNQ 842

Query: 659  EDSLVMNRASLERGMFRTEHIRCYKAEVDNXXXXXXXXXXXXXRIDFGKMPSKIGRVDSL 480
            EDSLVMNRASLERGMFR+EHIR YK+EVDN              + FGKM SKIGRVDSL
Sbjct: 843  EDSLVMNRASLERGMFRSEHIRSYKSEVDN-NESLDKKRKSEDSVHFGKMQSKIGRVDSL 901

Query: 479  DDDGFPFIGANLQTGDIVIGRCTESGADHSIKLKHTERGKVQKVILSANDEGKNFAAVSL 300
            DDDGFPFIGANLQ GDIVIGRC ESG DHSIKLKHTERG VQKV++SAND+GKNFA VSL
Sbjct: 902  DDDGFPFIGANLQNGDIVIGRCAESGVDHSIKLKHTERGMVQKVVVSANDDGKNFAVVSL 961

Query: 299  RQVRTPIVGDKFSSMHGQKGVVGLLESQENFPFTRQGIVPDIVINPHAFPTRQTPGQLLE 120
            RQVRTP +GDKFSSMHGQKGV+G LESQENFPFT QGIVPDIVINPHAFP+RQTPGQLLE
Sbjct: 962  RQVRTPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLE 1021

Query: 119  AALGKGIACGGLTRYATPFTTPSIDIITEQLHRAGYSRW 3
            AALGKGIACGGL R+ATPF+T S+D I +QLHRAG+SRW
Sbjct: 1022 AALGKGIACGGLLRHATPFSTLSVDAIADQLHRAGFSRW 1060


>gb|AAY68206.1| RNA polymerase IV second largest subunit [Solanum lycopersicum]
          Length = 1123

 Score = 1298 bits (3359), Expect = 0.0
 Identities = 651/1001 (65%), Positives = 775/1001 (77%), Gaps = 10/1001 (0%)
 Frame = -2

Query: 2975 MNKLCKEASKSFFSEYGLISHQINSYNDFVGNGIQKLFDSIGEINVEPGYDPSKKGGEGG 2796
            +   CK+AS  FF +YG ISHQINSYNDF+  GIQ++FDS+GEI+VEPGYDPSK+G +G 
Sbjct: 60   LKNFCKKASTGFFEKYGSISHQINSYNDFINYGIQRVFDSVGEIHVEPGYDPSKRG-DGD 118

Query: 2795 WRRATIKFGKVSLDKPTFWTGDK-PVSSGKEYLKFLPRHARLQHMTYSARMRVEIDYEVY 2619
            W+ A++KFGKV+L++P FW G+K  V  GKEYL  LPRHARLQ+MTYSAR+ VE   +VY
Sbjct: 119  WKHASVKFGKVTLERPKFWAGEKFSVGGGKEYLDLLPRHARLQNMTYSARIMVETHVQVY 178

Query: 2618 TLGKKSSDKFKTGKESEIDKIIETKGNKEVVIGRIPVMVKSNYCWMNGNKKGDCDFDHGG 2439
            T     SDKFKTG +  +DK  E +G ++V+IGRIPVMV S  CWMNG  K DC+FDHGG
Sbjct: 179  TKKLVRSDKFKTGVDRFVDKEWEVEGKRDVLIGRIPVMVNSELCWMNGVDKLDCEFDHGG 238

Query: 2438 YFIIKGAEKTFVAQEQICLKRLWVSDNPNWNIAYRTEWKRLXXXXXXXXXXXESSHLQGT 2259
            YFI KGAEKTF+AQEQ+CLKRLWVS+NP W + YR   KR                  G 
Sbjct: 239  YFIAKGAEKTFIAQEQLCLKRLWVSNNPTWMVGYRPGEKRKRVYIKLTETLKLEHIKGGE 298

Query: 2258 KVLNVYFLSCKIPLWVFLFALGMSSDKEIIEMIDIDXXXXXXXXXXXSTISYADADDQFE 2079
            K L+VY L+ ++P+WV  FALG+SSD+E++ +ID+D           ++I   +AD   E
Sbjct: 299  KALSVYILA-EMPIWVLFFALGVSSDREVVNLIDVDIEDTTIVNILVASIH--EADKNCE 355

Query: 2078 DFRKGGNSLEIIEKMISKTKFPPKESTKECMDKYLIPSLSSLKQKALFVGYMVKCLLKTY 1899
            DFRKG  +L  ++++I   KFPP+ES +EC++ YL P+LS  KQKA F+GYMVKCLL ++
Sbjct: 356  DFRKGKKALAYVDRLIKNCKFPPQESVEECINAYLFPNLSGFKQKARFLGYMVKCLLHSF 415

Query: 1898 TGERKCENRDDFRNKRLDLASELLERELRIHIRHAERRMVKFMQRDLYGNRALHPIDYYF 1719
             G RK +NRDDFRNKRL+LA ELLERELR HI+HAERRMVK MQRDLYG+R + PI++Y 
Sbjct: 416  IGRRKVDNRDDFRNKRLELAGELLERELRAHIKHAERRMVKAMQRDLYGDRQVQPIEHYL 475

Query: 1718 DASIITNGLSRAFSTGGWSHHLNRTERISGVVANLRRTNPLQMMSDLRKTRQQVRYTGKV 1539
            DASIITNGLSRAFSTG W H   R ER+SGVVA LRRTNPLQM +D+RK+RQQV YTGKV
Sbjct: 476  DASIITNGLSRAFSTGHWCHPYKRMERVSGVVATLRRTNPLQMTADMRKSRQQVTYTGKV 535

Query: 1538 GDARYPHPSHWGKLCFLSTSDGENSGLVKNMAVTGLVSTNLMEPSLDKLRECGMEEVADN 1359
            GDARYPHPSHWGKLCFLST DGEN GLVKN+A  GLVST +++P L+ L  CGM+++ D+
Sbjct: 536  GDARYPHPSHWGKLCFLSTPDGENCGLVKNLASMGLVSTIILKPFLETLFRCGMQKLVDD 595

Query: 1358 PSPFSLKGKAKVFLNGEWVGVCGDSLAFVLALKNKRRSKKVPPQVEIKSDQQKGEVRIFS 1179
             S  SL GK KV L+GEWVGVC DS  FV  L+ KRR  +VP QVE+K D+ +GEVRIFS
Sbjct: 596  CST-SLHGKQKVLLDGEWVGVCEDSALFVSKLRRKRRRNEVPHQVEVKRDELQGEVRIFS 654

Query: 1178 DSGRIMRPLLVVENLRKIKLCK-GDYNFNSLLNKXXXXXXXXXXXEDCQTAWGVKNLLSG 1002
            D GRI+RPLLVV NL+KIK  K GDY F SLL+            EDC+TAWGV+ +L  
Sbjct: 655  DPGRILRPLLVVSNLKKIKALKGGDYGFQSLLDNGIIELIGPEEEEDCRTAWGVEYILKA 714

Query: 1001 DRD-----YTHCELDSSFLLGLSCGIIPFPNHDHARRVLYQSEKHSQQAMGYSTTNPNIR 837
            D++     YTHCELD SFLLGLSCGIIPF NHDHARRVLYQSEKHSQQA+G+ST NPN R
Sbjct: 715  DKENPPAKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSEKHSQQAIGFSTVNPNNR 774

Query: 836  IDTLSHQLYYPQRPLFRTMISDCLGK---SEYPLGQNVHPKPEFYNGQNVILAVNVHQGY 666
            +DT +HQLYYPQRPLFRTM++D LGK   ++Y  G  + P+PE++NGQ  I+AVNVH GY
Sbjct: 775  VDTNTHQLYYPQRPLFRTMLADSLGKPKCAQYQKG--MLPRPEYFNGQCAIVAVNVHLGY 832

Query: 665  NQEDSLVMNRASLERGMFRTEHIRCYKAEVDNXXXXXXXXXXXXXRIDFGKMPSKIGRVD 486
            NQEDSLVMNRASLERGMFR+EH+R YKAEVDN              ++FGK  SKIGRVD
Sbjct: 833  NQEDSLVMNRASLERGMFRSEHVRSYKAEVDN-KEAMAKKLKIEDSVNFGKTQSKIGRVD 891

Query: 485  SLDDDGFPFIGANLQTGDIVIGRCTESGADHSIKLKHTERGKVQKVILSANDEGKNFAAV 306
            SLDDDGFPFIGANLQ+GDI+IG+ +ESGADHS+KLKHTERG VQKV+LSANDEGKNFA V
Sbjct: 892  SLDDDGFPFIGANLQSGDIIIGKFSESGADHSVKLKHTERGMVQKVLLSANDEGKNFAVV 951

Query: 305  SLRQVRTPIVGDKFSSMHGQKGVVGLLESQENFPFTRQGIVPDIVINPHAFPTRQTPGQL 126
            SLRQVR+P +GDKFSSMHGQKGV+G LESQENFPFT QGIVPDIVINPHAFP+RQTPGQL
Sbjct: 952  SLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQL 1011

Query: 125  LEAALGKGIACGGLTRYATPFTTPSIDIITEQLHRAGYSRW 3
            LEAALGKGIA GG  +YATPF+T S+D I EQL   G++RW
Sbjct: 1012 LEAALGKGIALGGGQKYATPFSTLSVDAIMEQLQGRGFTRW 1052


>ref|XP_002515428.1| DNA-directed RNA polymerase subunit, putative [Ricinus communis]
            gi|223545372|gb|EEF46877.1| DNA-directed RNA polymerase
            subunit, putative [Ricinus communis]
          Length = 1203

 Score = 1290 bits (3339), Expect = 0.0
 Identities = 650/998 (65%), Positives = 764/998 (76%), Gaps = 7/998 (0%)
 Frame = -2

Query: 2975 MNKLCKEASKSFFSEYGLISHQINSYNDFVGNGIQKLFDSIGEINVEPGYDPSKKGGEGG 2796
            +   C +A+  FF+EYGLISHQINSYNDF+ NGIQK FDS GE+ VEPGYDPSKKG E  
Sbjct: 59   LKDFCNKAATLFFNEYGLISHQINSYNDFINNGIQKAFDSFGELVVEPGYDPSKKG-ENE 117

Query: 2795 WRRATIKFGKVSLDKPTFWTGDKPVSSGKEYLKFLPRHARLQHMTYSARMRVEIDYEVYT 2616
            WR A++KFGKV+L+KPTFW       SG +  K LPRHARLQ+MTYS++M+V +  EVYT
Sbjct: 118  WRYASVKFGKVALEKPTFW-------SGADEHKMLPRHARLQNMTYSSKMKVNVSVEVYT 170

Query: 2615 LGKKSSDKFKTGKESEIDKIIETKGNKEVVIGRIPVMVKSNYCWMNGNKKGDCDFDHGGY 2436
                 SDKFKTGK+  +DK +    N+ + IG +PVMVKS+ CWM   +KGDCDFDHGGY
Sbjct: 171  RKVVRSDKFKTGKDQYVDKEVLNTDNRNITIGSLPVMVKSDLCWMKTAEKGDCDFDHGGY 230

Query: 2435 FIIKGAEKTFVAQEQICLKRLWVSDNPNWNIAYRTEWKRLXXXXXXXXXXXESSHLQGTK 2256
            F+IKGAEK F+AQEQICLKRLW+S+   W ++Y++E KR                    K
Sbjct: 231  FLIKGAEKVFIAQEQICLKRLWISNIQGWTVSYKSEIKRNRLIVRLVGLSALEDVKAEKK 290

Query: 2255 VLNVYFLSCKIPLWVFLFALGMSSDKEIIEMIDIDXXXXXXXXXXXSTISYADADDQFED 2076
             L VYFLS +IPLW+  FALG++SDKE+I++I              ++I   DAD++ E 
Sbjct: 291  CLTVYFLSTEIPLWILFFALGVTSDKEVIDLIGYGSNDARIVNIFFASIH--DADEKTEG 348

Query: 2075 FRKGGNSLEIIEKMISKTKFPPKESTKECMDKYLIPSLSSLKQKALFVGYMVKCLLKTYT 1896
            FR+G  +LE + + I  T+FPP E+ ++    YL P+L SL+QKA F+GYMVKCLL+ Y 
Sbjct: 349  FRRGKEALEYVVRQIRGTRFPPGEN-EDFFLLYLFPTLHSLRQKARFLGYMVKCLLQAYN 407

Query: 1895 GERKCENRDDFRNKRLDLASELLERELRIHIRHAERRMVKFMQRDLYGNRALHPIDYYFD 1716
            G+RKC N D FRNKR +LA ELLEREL++HI HA RRM K +Q+DLYG+R + PI++Y D
Sbjct: 408  GQRKCNNWDSFRNKRFELAKELLERELKVHIAHARRRMAKALQKDLYGDRDVRPIEHYLD 467

Query: 1715 ASIITNGLSRAFSTGGWSHHLNRTERISGVVANLRRTNPLQMMSDLRKTRQQVRYTGKVG 1536
            ASI+TNGLSRAFSTG WSH   R ERISGVVANL R NPLQ M DLRKTR  V+YTGKVG
Sbjct: 468  ASIVTNGLSRAFSTGAWSHPYKRMERISGVVANLGRANPLQTMVDLRKTRYHVQYTGKVG 527

Query: 1535 DARYPHPSHWGKLCFLSTSDGENSGLVKNMAVTGLVSTNLMEPSLDKLRECGMEEVADNP 1356
            DAR+PHPSHWG++CFLST DGEN GLVKN+A TGLVS N++EP +DKL   GME+V ++ 
Sbjct: 528  DARFPHPSHWGRVCFLSTPDGENCGLVKNLATTGLVSVNILEPLIDKLIARGMEKVPED- 586

Query: 1355 SPFSLKGKAKVFLNGEWVGVCGDSLAFVLALKNKRRSKKVPPQVEIKSDQQKGEVRIFSD 1176
            S   L  K KVFLNGEWVGVC DS  FV  L+  RR KK+P QVEIK D+Q+ EVRIFSD
Sbjct: 587  SHSDLDEKDKVFLNGEWVGVCEDSRLFVAELRRLRRRKKLPQQVEIKRDEQQQEVRIFSD 646

Query: 1175 SGRIMRPLLVVENLRKIKLCKG-DYNFNSLLNKXXXXXXXXXXXEDCQTAWGVKNLLSG- 1002
            +GRI+RPLLVV+NL KI+  KG +  F SLL+K           EDC TAWG+K LLSG 
Sbjct: 647  AGRILRPLLVVQNLHKIEAFKGGNCTFQSLLDKGIIEFVGTEEEEDCSTAWGIKFLLSGV 706

Query: 1001 ----DRDYTHCELDSSFLLGLSCGIIPFPNHDHARRVLYQSEKHSQQAMGYSTTNPNIRI 834
                   YTHCELD SFLLGLSCGIIPF NHDHARRVLYQ++KHSQQA+G+ TTNPNIR+
Sbjct: 707  DGKQSLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIGFPTTNPNIRV 766

Query: 833  DTLSHQLYYPQRPLFRTMISDCLGKSEYPLGQN-VHPKPEFYNGQNVILAVNVHQGYNQE 657
            DTLSHQLYYPQRPLFRT+ SDCLGK     G N + PKPE YNGQN I+AVNVH GYNQE
Sbjct: 767  DTLSHQLYYPQRPLFRTVTSDCLGKPGDTRGHNGIVPKPELYNGQNAIVAVNVHLGYNQE 826

Query: 656  DSLVMNRASLERGMFRTEHIRCYKAEVDNXXXXXXXXXXXXXRIDFGKMPSKIGRVDSLD 477
            DSLVMNRASLERGMFR+EHIR YKA+VDN              ++FGK+PSKIGRVDSLD
Sbjct: 827  DSLVMNRASLERGMFRSEHIRSYKADVDNKELLDKRRKYDDN-VNFGKIPSKIGRVDSLD 885

Query: 476  DDGFPFIGANLQTGDIVIGRCTESGADHSIKLKHTERGKVQKVILSANDEGKNFAAVSLR 297
            DDGFPFIGANLQ+GDIVIGRC ESG DHSIKLKHTERG VQKV+LS+NDEGKNFA VSLR
Sbjct: 886  DDGFPFIGANLQSGDIVIGRCAESGPDHSIKLKHTERGMVQKVVLSSNDEGKNFAVVSLR 945

Query: 296  QVRTPIVGDKFSSMHGQKGVVGLLESQENFPFTRQGIVPDIVINPHAFPTRQTPGQLLEA 117
            QVR+P +GDKFSSMHGQKGV+G LESQENFPFTRQGIVPDIVINPH+FP+RQTPGQLLEA
Sbjct: 946  QVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTRQGIVPDIVINPHSFPSRQTPGQLLEA 1005

Query: 116  ALGKGIACGGLTRYATPFTTPSIDIITEQLHRAGYSRW 3
            ALGKGIACGG  +YATPF+T S++ IT QLHRAG+SRW
Sbjct: 1006 ALGKGIACGGSMKYATPFSTLSVEAITNQLHRAGFSRW 1043


>ref|XP_004145500.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Cucumis
            sativus]
          Length = 1197

 Score = 1281 bits (3316), Expect = 0.0
 Identities = 634/997 (63%), Positives = 761/997 (76%), Gaps = 6/997 (0%)
 Frame = -2

Query: 2975 MNKLCKEASKSFFSEYGLISHQINSYNDFVGNGIQKLFDSIGEINVEPGYDPSKKGGEGG 2796
            +   CK++S +FF++YGLISHQINSYNDF+ NGIQK FD  G+I V+PGYDPSKKG +G 
Sbjct: 48   LKDFCKKSSMAFFNQYGLISHQINSYNDFIKNGIQKAFDFFGDILVQPGYDPSKKG-DGE 106

Query: 2795 WRRATIKFGKVSLDKPTFWTGDKPVSSGKEYLKFLPRHARLQHMTYSARMRVEIDYEVYT 2616
            WR AT+KFGKV+LDKP FW G    +SGKEY   LPRHARLQ+MTYS+RM++ I  E+YT
Sbjct: 107  WRYATVKFGKVTLDKPKFWGG---AASGKEY-NMLPRHARLQNMTYSSRMKINISLEIYT 162

Query: 2615 LGKKSSDKFKTGKESEIDK--IIETKGNKEVVIGRIPVMVKSNYCWMNGNKKGDCDFDHG 2442
                SSDKFKTGK+  +DK  +     N++V IGR+PVMV S+ CWM   +K DC+FD G
Sbjct: 163  QKLVSSDKFKTGKDQYVDKEPVEGASDNRDVFIGRLPVMVNSDLCWMKDGQKRDCEFDRG 222

Query: 2441 GYFIIKGAEKTFVAQEQICLKRLWVSDNPNWNIAYRTEWKRLXXXXXXXXXXXESSHLQG 2262
            GYF+IKGAEK F+AQEQICL+RLW+S+   W +AYR+E KR                   
Sbjct: 223  GYFLIKGAEKIFIAQEQICLRRLWISNVQGWTVAYRSEVKRNRLIIRLVENSKSEDLKSK 282

Query: 2261 TKVLNVYFLSCKIPLWVFLFALGMSSDKEIIEMIDIDXXXXXXXXXXXSTISYADADDQF 2082
             KVLNVYFLS ++P+W+  FALG+SSDKEI+++ID             +++   D DD++
Sbjct: 283  EKVLNVYFLSTEVPVWILFFALGVSSDKEIVDLIDYGRDDPTVLNILFASVREVDNDDKW 342

Query: 2081 EDFRKGGNSLEIIEKMISKTKFPPKESTKECMDKYLIPSLSSLKQKALFVGYMVKCLLKT 1902
            +DFR+G  +L  ++  I KT FPP +  ++C++ YL  SL   KQK  F+GYMVKCLL+ 
Sbjct: 343  KDFRRGKRALTFLDNEIRKTSFPPADKIEDCLNLYLFASLKGSKQKCHFLGYMVKCLLQA 402

Query: 1901 YTGERKCENRDDFRNKRLDLASELLERELRIHIRHAERRMVKFMQRDLYGNRALHPIDYY 1722
            YTG RKC+NRDDFRNKR +LA+ELLEREL++HI HA RRM K +QRDLYG+R +HPI++Y
Sbjct: 403  YTGRRKCDNRDDFRNKRFELAAELLERELKVHIAHARRRMEKALQRDLYGDRQVHPIEHY 462

Query: 1721 FDASIITNGLSRAFSTGGWSHHLNRTERISGVVANLRRTNPLQMMSDLRKTRQQVRYTGK 1542
             DASIITNGLSRAFSTG W+H   R ERISGVVA L R NPLQ M++LR+TRQQV YTGK
Sbjct: 463  LDASIITNGLSRAFSTGAWAHAFKRMERISGVVATLGRANPLQTMAELRRTRQQVAYTGK 522

Query: 1541 VGDARYPHPSHWGKLCFLSTSDGENSGLVKNMAVTGLVSTNLMEPSLDKLRECGMEEVAD 1362
            VGDARYPHPSHWG++CFLST DGEN GL+KN++ TGLVS N  +     L  CGME + D
Sbjct: 523  VGDARYPHPSHWGRVCFLSTPDGENCGLIKNLSGTGLVSLNTKKSITPTLFRCGMENLVD 582

Query: 1361 NPSPFSLKGKAKVFLNGEWVGVCGDSLAFVLALKNKRRSKKVPPQVEIKSDQQKGEVRIF 1182
            N S  S  GK ++FL+GEWVGVC DSL+FV  ++ KRR      QVE+K D+Q  EVRIF
Sbjct: 583  NTST-SFCGKYRIFLDGEWVGVCEDSLSFVTNVRRKRRRNPFLHQVEVKRDEQLKEVRIF 641

Query: 1181 SDSGRIMRPLLVVENLRKIKLCKGD-YNFNSLLNKXXXXXXXXXXXEDCQTAWGVKNLL- 1008
            SD+GRI+RPLLVVENL +I   KG+ Y F SLL+K           EDC+ AW +K+L+ 
Sbjct: 642  SDAGRILRPLLVVENLNRIDKSKGENYTFQSLLDKGIIELIGTEEEEDCRVAWSIKHLME 701

Query: 1007 -SGDRDYTHCELDSSFLLGLSCGIIPFPNHDHARRVLYQSEKHSQQAMGYSTTNPNIRID 831
              G   Y+HCELD SFLLGLSCG++PF NHDHARR L+QS+KHS QA+G+S TN N R+D
Sbjct: 702  DEGTTKYSHCELDMSFLLGLSCGLVPFANHDHARRALFQSQKHSNQAIGFSPTNSNFRVD 761

Query: 830  TLSHQLYYPQRPLFRTMISDCLGKSEYPLGQ-NVHPKPEFYNGQNVILAVNVHQGYNQED 654
            TLSHQL+YPQRPLFRTM +DCLG   Y      + PKPEFYNGQN I+AVNVH GYNQED
Sbjct: 762  TLSHQLHYPQRPLFRTMTADCLGTPGYLSSHAGILPKPEFYNGQNAIVAVNVHLGYNQED 821

Query: 653  SLVMNRASLERGMFRTEHIRCYKAEVDNXXXXXXXXXXXXXRIDFGKMPSKIGRVDSLDD 474
            SLVMNRASLERGMFR+EHIR YKAEVDN              I+FGK  SKIGRVDSLDD
Sbjct: 822  SLVMNRASLERGMFRSEHIRSYKAEVDN-KESSEKRRKSDDAINFGKTQSKIGRVDSLDD 880

Query: 473  DGFPFIGANLQTGDIVIGRCTESGADHSIKLKHTERGKVQKVILSANDEGKNFAAVSLRQ 294
            DGFP+IGANLQ+GDIVIGRC ESGADHSIKLKHTE+G VQKV+LS+ND+GKN+A VSLRQ
Sbjct: 881  DGFPYIGANLQSGDIVIGRCAESGADHSIKLKHTEKGMVQKVVLSSNDDGKNYAVVSLRQ 940

Query: 293  VRTPIVGDKFSSMHGQKGVVGLLESQENFPFTRQGIVPDIVINPHAFPTRQTPGQLLEAA 114
            VR+P +GDKFSSMHGQKGV+G LESQENFPFT QGIVPDIVINPHAFP+RQTPGQLLEAA
Sbjct: 941  VRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAA 1000

Query: 113  LGKGIACGGLTRYATPFTTPSIDIITEQLHRAGYSRW 3
            LGKGIA GG  +YATPF+TPS+D IT+QLHRAG+SRW
Sbjct: 1001 LGKGIAAGGSLKYATPFSTPSVDAITDQLHRAGFSRW 1037