BLASTX nr result
ID: Cimicifuga21_contig00007920
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cimicifuga21_contig00007920
(1015 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002275052.2| PREDICTED: double-stranded RNA-binding prote... 209 9e-52
emb|CBI21312.3| unnamed protein product [Vitis vinifera] 209 9e-52
emb|CAN71476.1| hypothetical protein VITISV_038619 [Vitis vinifera] 209 9e-52
ref|XP_002298650.1| predicted protein [Populus trichocarpa] gi|2... 196 6e-48
ref|XP_002512890.1| double-stranded RNA binding protein, putativ... 190 5e-46
>ref|XP_002275052.2| PREDICTED: double-stranded RNA-binding protein 5 [Vitis vinifera]
Length = 484
Score = 209 bits (532), Expect = 9e-52
Identities = 145/367 (39%), Positives = 180/367 (49%), Gaps = 87/367 (23%)
Frame = +1
Query: 1 DEIGVYKNLLQESVHRAGLTLPVYTTERSGPGHLPVFISIVELAGMSFSGETARTKKQAE 180
DE GVYKNLLQE+ HRAGL LPVYTT RSGPGH+PVF VELAGM+F+GE+A+TKKQAE
Sbjct: 86 DETGVYKNLLQETAHRAGLNLPVYTTVRSGPGHVPVFTCTVELAGMNFTGESAKTKKQAE 145
Query: 181 KNAAMAAWSALKQLSNLG--SKXXXXXXXXXXXAVVARVLSNFRPKGESKSLRQRDQNQG 354
KNAA+AAWSALK++ NLG S VVARVLSNFR K ES+ +R+ DQNQ
Sbjct: 146 KNAAIAAWSALKRVPNLGSLSHLSKEAESREEQVVVARVLSNFRSKDESRPIRRWDQNQA 205
Query: 355 RGRMVSSYRDKDNYCGSSSKPSFLQWRP--------PPDFSSTQQKRXXXXXXXXXXXXX 510
R RMV + + S++ F +WRP P ++ Q
Sbjct: 206 RRRMVRGHGGSGSSSTSNNSQQFQKWRPMDLLMDSVPEGGTAQNQNCFVALLPPPPPRTA 265
Query: 511 XKILPP----------------PTSSIDKSNQVRMKDVPPPFEEHQKYEDEWLNG----- 627
KILPP P +I +S QV+M +VP EEHQ+ E+EWL+G
Sbjct: 266 SKILPPISPRDTLSLYPSTRPIPVQAIGRS-QVKMPEVPTLLEEHQRDEEEWLDGKSNLI 324
Query: 628 -----------ANSNSKLGYHKTYT----------------------------------- 669
AN++S G + Y
Sbjct: 325 RKPTEKECPSNANASSVYGANSIYRPFPLPNAGKLNTSLPDSPHQPHEQTHIKNNPFGNP 384
Query: 670 -------RSTVTRPRILNSGGF---HIAPAVHIRSVIPVCAAPPQSSTSPIAAAPLSDMK 819
+ + PR + +GGF IAPAV IRSVIPVCAAPP P P S+
Sbjct: 385 TPSAMKGSAGIHIPRTMGTGGFQPHRIAPAVQIRSVIPVCAAPP-----PPMRLPPSNHP 439
Query: 820 QREQEGP 840
R + P
Sbjct: 440 TRNEASP 446
>emb|CBI21312.3| unnamed protein product [Vitis vinifera]
Length = 481
Score = 209 bits (532), Expect = 9e-52
Identities = 145/367 (39%), Positives = 180/367 (49%), Gaps = 87/367 (23%)
Frame = +1
Query: 1 DEIGVYKNLLQESVHRAGLTLPVYTTERSGPGHLPVFISIVELAGMSFSGETARTKKQAE 180
DE GVYKNLLQE+ HRAGL LPVYTT RSGPGH+PVF VELAGM+F+GE+A+TKKQAE
Sbjct: 83 DETGVYKNLLQETAHRAGLNLPVYTTVRSGPGHVPVFTCTVELAGMNFTGESAKTKKQAE 142
Query: 181 KNAAMAAWSALKQLSNLG--SKXXXXXXXXXXXAVVARVLSNFRPKGESKSLRQRDQNQG 354
KNAA+AAWSALK++ NLG S VVARVLSNFR K ES+ +R+ DQNQ
Sbjct: 143 KNAAIAAWSALKRVPNLGSLSHLSKEAESREEQVVVARVLSNFRSKDESRPIRRWDQNQA 202
Query: 355 RGRMVSSYRDKDNYCGSSSKPSFLQWRP--------PPDFSSTQQKRXXXXXXXXXXXXX 510
R RMV + + S++ F +WRP P ++ Q
Sbjct: 203 RRRMVRGHGGSGSSSTSNNSQQFQKWRPMDLLMDSVPEGGTAQNQNCFVALLPPPPPRTA 262
Query: 511 XKILPP----------------PTSSIDKSNQVRMKDVPPPFEEHQKYEDEWLNG----- 627
KILPP P +I +S QV+M +VP EEHQ+ E+EWL+G
Sbjct: 263 SKILPPISPRDTLSLYPSTRPIPVQAIGRS-QVKMPEVPTLLEEHQRDEEEWLDGKSNLI 321
Query: 628 -----------ANSNSKLGYHKTYT----------------------------------- 669
AN++S G + Y
Sbjct: 322 RKPTEKECPSNANASSVYGANSIYRPFPLPNAGKLNTSLPDSPHQPHEQTHIKNNPFGNP 381
Query: 670 -------RSTVTRPRILNSGGF---HIAPAVHIRSVIPVCAAPPQSSTSPIAAAPLSDMK 819
+ + PR + +GGF IAPAV IRSVIPVCAAPP P P S+
Sbjct: 382 TPSAMKGSAGIHIPRTMGTGGFQPHRIAPAVQIRSVIPVCAAPP-----PPMRLPPSNHP 436
Query: 820 QREQEGP 840
R + P
Sbjct: 437 TRNEASP 443
>emb|CAN71476.1| hypothetical protein VITISV_038619 [Vitis vinifera]
Length = 552
Score = 209 bits (532), Expect = 9e-52
Identities = 145/367 (39%), Positives = 180/367 (49%), Gaps = 87/367 (23%)
Frame = +1
Query: 1 DEIGVYKNLLQESVHRAGLTLPVYTTERSGPGHLPVFISIVELAGMSFSGETARTKKQAE 180
DE GVYKNLLQE+ HRAGL LPVYTT RSGPGH+PVF VELAGM+F+GE+A+TKKQAE
Sbjct: 154 DETGVYKNLLQETAHRAGLNLPVYTTVRSGPGHVPVFTCTVELAGMNFTGESAKTKKQAE 213
Query: 181 KNAAMAAWSALKQLSNLG--SKXXXXXXXXXXXAVVARVLSNFRPKGESKSLRQRDQNQG 354
KNAA+AAWSALK++ NLG S VVARVLSNFR K ES+ +R+ DQNQ
Sbjct: 214 KNAAIAAWSALKRVPNLGSLSHLSKEAESREEQVVVARVLSNFRSKDESRPIRRWDQNQA 273
Query: 355 RGRMVSSYRDKDNYCGSSSKPSFLQWRP--------PPDFSSTQQKRXXXXXXXXXXXXX 510
R RMV + + S++ F +WRP P ++ Q
Sbjct: 274 RRRMVRGHGGSGSSSTSNNSQQFQKWRPMDLLMDSVPEGGTAQNQNCFVALLPPPPPRTA 333
Query: 511 XKILPP----------------PTSSIDKSNQVRMKDVPPPFEEHQKYEDEWLNG----- 627
KILPP P +I +S QV+M +VP EEHQ+ E+EWL+G
Sbjct: 334 SKILPPISPRDTLSLYPSTRPIPVQAIGRS-QVKMPEVPTLLEEHQRDEEEWLDGKSNLI 392
Query: 628 -----------ANSNSKLGYHKTYT----------------------------------- 669
AN++S G + Y
Sbjct: 393 RKPTEKECPSNANASSVYGANSIYRPFPLPNAGKLNTSLPDSPHQPHEQTHIKNNPFGNP 452
Query: 670 -------RSTVTRPRILNSGGF---HIAPAVHIRSVIPVCAAPPQSSTSPIAAAPLSDMK 819
+ + PR + +GGF IAPAV IRSVIPVCAAPP P P S+
Sbjct: 453 TPSAMKGSAGIHIPRTMGTGGFQPHRIAPAVQIRSVIPVCAAPP-----PPMRLPPSNHP 507
Query: 820 QREQEGP 840
R + P
Sbjct: 508 TRNEASP 514
>ref|XP_002298650.1| predicted protein [Populus trichocarpa] gi|222845908|gb|EEE83455.1|
predicted protein [Populus trichocarpa]
Length = 357
Score = 196 bits (499), Expect = 6e-48
Identities = 125/278 (44%), Positives = 156/278 (56%), Gaps = 15/278 (5%)
Frame = +1
Query: 1 DEIGVYKNLLQESVHRAGLTLPVYTTERSGPGHLPVFISIVELAGMSFSGETARTKKQAE 180
DE G+YKNLLQE+ HRAGL LPVYTT RSGPGH+PVF VELAGM+F+GE A+TKKQAE
Sbjct: 83 DETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPVFTCTVELAGMNFTGEPAKTKKQAE 142
Query: 181 KNAAMAAWSALKQLSNLG--SKXXXXXXXXXXXAVVARVLSNFRPKGESKSLRQRDQNQG 354
KNAA+AAWSALK+ NL S AVVARVLSNFR K E + R+RD NQ
Sbjct: 143 KNAAIAAWSALKRFPNLDSLSSKEVDTREEQDQAVVARVLSNFRSKDEGRYARKRDHNQA 202
Query: 355 RGRMVSSYRDKDNYCGSSSKPSFLQW---------RPPPDFSSTQQKRXXXXXXXXXXXX 507
R RMV ++D SS+ +FL W P + TQ K
Sbjct: 203 RRRMVRGHKDSSGASSSSTSNNFLLWFNTNAEVLLYVSPSSTPTQNK-FKDFATALTYRQ 261
Query: 508 XXKILPPPTSSIDKSNQVRMKDVPPPFEEHQK-YEDEWLNGANSNSKLGYHKTYTRSTVT 684
IL I+++ + +P +H+ + + G+ + S + T S+
Sbjct: 262 SISIL------IEQAYSNTITSLPDNTSQHESTHISSRIFGSTNPSPMASISIKTPSSTH 315
Query: 685 RPRILNSGGFH---IAPAVHIRSVIPVCAAPPQSSTSP 789
PR + +GGF+ IAPAV IRSVIPVCAAPP S P
Sbjct: 316 VPRPMFTGGFNPHRIAPAVQIRSVIPVCAAPPSPSRPP 353
>ref|XP_002512890.1| double-stranded RNA binding protein, putative [Ricinus communis]
gi|223547901|gb|EEF49393.1| double-stranded RNA binding
protein, putative [Ricinus communis]
Length = 477
Score = 190 bits (482), Expect = 5e-46
Identities = 138/336 (41%), Positives = 170/336 (50%), Gaps = 66/336 (19%)
Frame = +1
Query: 1 DEIGVYKNLLQESVHRAGLTLPVYTTERSGPGHLPVFISIVELAGMSFSGETARTKKQAE 180
DE G+YKNLLQE+ HRAGL LPVYTT RSGPGH+P F VELAGM+F+GE A+TKKQAE
Sbjct: 86 DETGIYKNLLQETAHRAGLNLPVYTTIRSGPGHVPTFTCTVELAGMNFTGEPAKTKKQAE 145
Query: 181 KNAAMAAWSALKQLSNLG---SKXXXXXXXXXXXAVVARVLSNFRPKGE-SKSLRQRDQN 348
KNAA+AAWSALK++ +L +K AVVARVLSNFR K E +K R++D +
Sbjct: 146 KNAAIAAWSALKRMPSLDYLTNKEVVESREEQDQAVVARVLSNFRSKDEYNKQARKKDCS 205
Query: 349 QGRGRMVSSYRDKDNYCGSSSKPS----FLQWRPPPDF-------SSTQQKRXXXXXXXX 495
Q R R+V YRD + SSS S Q R D SSTQ++
Sbjct: 206 QARRRLVKGYRDYSSASSSSSSTSSNSLHYQHRKLLDLLLDSALDSSTQKQSSFVSLLPP 265
Query: 496 XXXXXXKILPPPTSSIDK------------SNQVRMKDVPPPFEEHQKYEDEW------- 618
+ PPTS ID QV+ K EEHQK E+EW
Sbjct: 266 PPPRTTSKILPPTSPIDNPYSYPSSRCNPHQIQVKGKQQTKEIEEHQKDEEEWPGAIKKS 325
Query: 619 ---------LNGANS---------------NSKLGYHKTYTRSTVTRPRILNSGGFH--- 717
+ G++S N G T +ST + + ++ F+
Sbjct: 326 IEKESSSSSVYGSSSLYRQFPHQESTSHIGNRIFGPSSTSIKSTPSSIHMCSNSPFYSGM 385
Query: 718 -----IAPAVHIRSVIPVCAAPPQSSTSPIAAAPLS 810
IAPAV IRSVIPVCAAPP + A AP S
Sbjct: 386 LYPHRIAPAVQIRSVIPVCAAPPAAVRPAPAPAPSS 421