BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00007488
         (1339 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002269045.1| PREDICTED: transcription initiation factor I...   531   e-148
ref|XP_002284342.1| PREDICTED: transcription initiation factor I...   530   e-148
ref|XP_002513521.1| transcription initiation factor iib, putativ...   524   e-146
ref|NP_001063775.1| Os09g0534800 [Oryza sativa Japonica Group] g...   520   e-145
ref|XP_002534470.1| transcription initiation factor iib, putativ...   520   e-145

>ref|XP_002269045.1| PREDICTED: transcription initiation factor IIB-2 [Vitis vinifera]
            gi|296088031|emb|CBI35314.3| unnamed protein product
            [Vitis vinifera]
          Length = 312

 Score =  531 bits (1367), Expect = e-148
 Identities = 262/310 (84%), Positives = 284/310 (91%), Gaps = 1/310 (0%)
 Frame = -3

Query: 1118 DAYCTDCKKNTEVVFDHSAGDTVCSECGLVLEAHSIDETSEWRTFANESGDNDPNRVGGP 939
            DA+CTDCKKNTEVVFDHSAGDTVCSECGLVLE+HSIDETSEWRTFANESGDNDP RVGGP
Sbjct: 3    DAFCTDCKKNTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62

Query: 938  SNPLLTDGGLSTIISKPNXXXXXXXXXXXGRWQNRGNNPDRSLILAFKTIATMSDRLNLV 759
            SNPLLTDGGLST+I+KPN           GRWQNRG+NPDR LILAFKTIATMSDRL LV
Sbjct: 63   SNPLLTDGGLSTVIAKPNGVSGDFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLV 122

Query: 758  ATIKDRANEIYKKVEDQKSIRGRNQDAILAACLYIACRQEDKPRTVKEICSVANGATKKE 579
            ATIKDRANEIYKKVEDQKS RGRNQDA+LAACLYIACRQEDKPRTVKEICSVANGATKKE
Sbjct: 123  ATIKDRANEIYKKVEDQKSTRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKE 182

Query: 578  IGRAKEYIVKQLEVEMG-PMEMGAIHAGDFLRRFCSHLGMTNQTVKAAQEVVQKSEELDI 402
            IGRAKEYIVKQLE E G  +EMG IHAGDF+RRFCS+LGMTNQ VKAAQE VQKSEE DI
Sbjct: 183  IGRAKEYIVKQLEAEKGQSVEMGTIHAGDFMRRFCSNLGMTNQVVKAAQEAVQKSEEFDI 242

Query: 401  RRSPISVAAAVIYMVTQLSDDRKLLRDISSATGVAEGTIRNSYKDLHPYASRLIPTWFAK 222
            RRSP+S+AAAVIY++TQLSD++KLLRDIS ATGVAEGTIRNSYKDL+P+ SR+IP+W+AK
Sbjct: 243  RRSPVSIAAAVIYIITQLSDEKKLLRDISIATGVAEGTIRNSYKDLYPHISRIIPSWYAK 302

Query: 221  EEDLKNLSTP 192
            EEDL+NL +P
Sbjct: 303  EEDLRNLCSP 312


>ref|XP_002284342.1| PREDICTED: transcription initiation factor IIB-2 [Vitis vinifera]
            gi|297739630|emb|CBI29812.3| unnamed protein product
            [Vitis vinifera]
          Length = 312

 Score =  530 bits (1364), Expect = e-148
 Identities = 261/310 (84%), Positives = 284/310 (91%), Gaps = 1/310 (0%)
 Frame = -3

Query: 1118 DAYCTDCKKNTEVVFDHSAGDTVCSECGLVLEAHSIDETSEWRTFANESGDNDPNRVGGP 939
            DA+CTDCKKNTEVVFDHSAGDTVCSECGLVLE+HSIDETSEWRTFANESGDNDP RVGGP
Sbjct: 3    DAFCTDCKKNTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62

Query: 938  SNPLLTDGGLSTIISKPNXXXXXXXXXXXGRWQNRGNNPDRSLILAFKTIATMSDRLNLV 759
            SNPLLTDGGLST+I+KPN           GRWQNRG+NPDR LILAFKTIATMSDRL LV
Sbjct: 63   SNPLLTDGGLSTVIAKPNGVSGDFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLV 122

Query: 758  ATIKDRANEIYKKVEDQKSIRGRNQDAILAACLYIACRQEDKPRTVKEICSVANGATKKE 579
            ATIKDRANEIYKKVEDQKS RGRNQDA+LAACLYIACRQEDKPRTVKEICSVANGATKKE
Sbjct: 123  ATIKDRANEIYKKVEDQKSTRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKE 182

Query: 578  IGRAKEYIVKQLEVEMG-PMEMGAIHAGDFLRRFCSHLGMTNQTVKAAQEVVQKSEELDI 402
            IGRAKEYIVKQLE E G  +EMG IHAGDF+RRFCS+LGMTNQ VKAAQE VQKSEE DI
Sbjct: 183  IGRAKEYIVKQLEAEKGQSVEMGTIHAGDFMRRFCSNLGMTNQVVKAAQEAVQKSEEFDI 242

Query: 401  RRSPISVAAAVIYMVTQLSDDRKLLRDISSATGVAEGTIRNSYKDLHPYASRLIPTWFAK 222
            RRSP+S+AAAVIY++TQLSD++KLLRDIS ATGVAEGTIRNSYKDL+P+ S++IP+W+AK
Sbjct: 243  RRSPVSIAAAVIYIITQLSDEKKLLRDISIATGVAEGTIRNSYKDLYPHISKIIPSWYAK 302

Query: 221  EEDLKNLSTP 192
            EEDL+NL +P
Sbjct: 303  EEDLRNLCSP 312


>ref|XP_002513521.1| transcription initiation factor iib, putative [Ricinus communis]
            gi|223547429|gb|EEF48924.1| transcription initiation
            factor iib, putative [Ricinus communis]
          Length = 312

 Score =  524 bits (1349), Expect = e-146
 Identities = 258/310 (83%), Positives = 281/310 (90%), Gaps = 1/310 (0%)
 Frame = -3

Query: 1118 DAYCTDCKKNTEVVFDHSAGDTVCSECGLVLEAHSIDETSEWRTFANESGDNDPNRVGGP 939
            D YC DCK+ TEVVFDHSAGDTVCSECGLVLE+HSIDETSEWRTFANES DNDP RVGGP
Sbjct: 3    DTYCPDCKRPTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESADNDPVRVGGP 62

Query: 938  SNPLLTDGGLSTIISKPNXXXXXXXXXXXGRWQNRGNNPDRSLILAFKTIATMSDRLNLV 759
            SNPLL DGGLST+ISKP            GRWQNRG+NPDRSLI AFKTIATMSDRL LV
Sbjct: 63   SNPLLADGGLSTVISKPTGASGDFLTSSLGRWQNRGSNPDRSLIQAFKTIATMSDRLGLV 122

Query: 758  ATIKDRANEIYKKVEDQKSIRGRNQDAILAACLYIACRQEDKPRTVKEICSVANGATKKE 579
            ATIKDRANEIYKKVEDQK +RGRNQDA+LAACLYIACRQEDKPRTVKEICSVANGATKKE
Sbjct: 123  ATIKDRANEIYKKVEDQKPLRGRNQDAVLAACLYIACRQEDKPRTVKEICSVANGATKKE 182

Query: 578  IGRAKEYIVKQLEVEMG-PMEMGAIHAGDFLRRFCSHLGMTNQTVKAAQEVVQKSEELDI 402
            IGRAKEYIVKQLEVE+G  MEMG IHAGDFLRRFCSHLGM NQ VKAAQE V+KSEELDI
Sbjct: 183  IGRAKEYIVKQLEVELGQSMEMGTIHAGDFLRRFCSHLGMNNQAVKAAQEAVKKSEELDI 242

Query: 401  RRSPISVAAAVIYMVTQLSDDRKLLRDISSATGVAEGTIRNSYKDLHPYASRLIPTWFAK 222
            RRSPIS+AAA+IYM+TQLS+++KLL+DIS++TGVAEGTIRNSYKDL+PYASR++P+W+AK
Sbjct: 243  RRSPISIAAAIIYMITQLSEEKKLLKDISTSTGVAEGTIRNSYKDLYPYASRIVPSWYAK 302

Query: 221  EEDLKNLSTP 192
            EEDL NL +P
Sbjct: 303  EEDLINLCSP 312


>ref|NP_001063775.1| Os09g0534800 [Oryza sativa Japonica Group]
            gi|21362998|sp|Q8W0W3.1|TF2B_ORYSJ RecName:
            Full=Transcription initiation factor IIB; AltName:
            Full=General transcription factor TFIIB
            gi|18481632|gb|AAL73491.1|AF464908_1 general
            transcription factor TFIIB [Oryza sativa]
            gi|50725809|dbj|BAD33339.1| Transcription initiation
            factor IIB [Oryza sativa Japonica Group]
            gi|50726577|dbj|BAD34211.1| Transcription initiation
            factor IIB [Oryza sativa Japonica Group]
            gi|113632008|dbj|BAF25689.1| Os09g0534800 [Oryza sativa
            Japonica Group] gi|125564497|gb|EAZ09877.1| hypothetical
            protein OsI_32170 [Oryza sativa Indica Group]
            gi|125606444|gb|EAZ45480.1| hypothetical protein
            OsJ_30135 [Oryza sativa Japonica Group]
            gi|347737122|gb|AEP20532.1| transcription factor [Oryza
            sativa Japonica Group]
          Length = 312

 Score =  520 bits (1338), Expect = e-145
 Identities = 260/310 (83%), Positives = 280/310 (90%), Gaps = 1/310 (0%)
 Frame = -3

Query: 1118 DAYCTDCKKNTEVVFDHSAGDTVCSECGLVLEAHSIDETSEWRTFANESGDNDPNRVGGP 939
            D++C DCKK+TEV FDHSAGDTVC+ECGLVLEAHS+DETSEWRTFANES DNDP RVGGP
Sbjct: 3    DSFCPDCKKHTEVAFDHSAGDTVCTECGLVLEAHSVDETSEWRTFANESSDNDPVRVGGP 62

Query: 938  SNPLLTDGGLSTIISKPNXXXXXXXXXXXGRWQNRGNNPDRSLILAFKTIATMSDRLNLV 759
            +NPLLTDGGLST+I+KPN           GRWQNRG+NPDRSLILAF+TIA M+DRL LV
Sbjct: 63   TNPLLTDGGLSTVIAKPNGAQGEFLSSSLGRWQNRGSNPDRSLILAFRTIANMADRLGLV 122

Query: 758  ATIKDRANEIYKKVEDQKSIRGRNQDAILAACLYIACRQEDKPRTVKEICSVANGATKKE 579
            ATIKDRANEIYKKVED KSIRGRNQDAILAACLYIACRQED+PRTVKEICSVANGATKKE
Sbjct: 123  ATIKDRANEIYKKVEDLKSIRGRNQDAILAACLYIACRQEDRPRTVKEICSVANGATKKE 182

Query: 578  IGRAKEYIVKQLEVEMG-PMEMGAIHAGDFLRRFCSHLGMTNQTVKAAQEVVQKSEELDI 402
            IGRAKE+IVKQLEVEMG  MEMG IHAGDFLRRFCS LGM NQ VKAAQE VQ+SEELDI
Sbjct: 183  IGRAKEFIVKQLEVEMGQSMEMGTIHAGDFLRRFCSTLGMNNQAVKAAQEAVQRSEELDI 242

Query: 401  RRSPISVAAAVIYMVTQLSDDRKLLRDISSATGVAEGTIRNSYKDLHPYASRLIPTWFAK 222
            RRSPIS+AAAVIYM+TQLSDD+K L+DIS ATGVAEGTIRNSYKDL+PYASRLIP  +AK
Sbjct: 243  RRSPISIAAAVIYMITQLSDDKKPLKDISLATGVAEGTIRNSYKDLYPYASRLIPNTYAK 302

Query: 221  EEDLKNLSTP 192
            EEDLKNL TP
Sbjct: 303  EEDLKNLCTP 312


>ref|XP_002534470.1| transcription initiation factor iib, putative [Ricinus communis]
            gi|223525233|gb|EEF27913.1| transcription initiation
            factor iib, putative [Ricinus communis]
          Length = 312

 Score =  520 bits (1338), Expect = e-145
 Identities = 256/310 (82%), Positives = 281/310 (90%), Gaps = 1/310 (0%)
 Frame = -3

Query: 1118 DAYCTDCKKNTEVVFDHSAGDTVCSECGLVLEAHSIDETSEWRTFANESGDNDPNRVGGP 939
            DAYC+DCK+ TEVVFDHSAGDTVCSECGLVLE+HSIDETSEWRTFANESGDNDP RVGGP
Sbjct: 3    DAYCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62

Query: 938  SNPLLTDGGLSTIISKPNXXXXXXXXXXXGRWQNRGNNPDRSLILAFKTIATMSDRLNLV 759
            +NPLL DGGLST+I+KPN           GRWQNRG+NPDR LILAFKTIATMSDRL LV
Sbjct: 63   TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLV 122

Query: 758  ATIKDRANEIYKKVEDQKSIRGRNQDAILAACLYIACRQEDKPRTVKEICSVANGATKKE 579
            ATIKDRANEIYKKVEDQKS RGRNQDA+LAACLYIACRQEDKPRTVKEICSVANGATKKE
Sbjct: 123  ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKE 182

Query: 578  IGRAKEYIVKQLEVEMG-PMEMGAIHAGDFLRRFCSHLGMTNQTVKAAQEVVQKSEELDI 402
            IGRAKEYIVKQL +E G  +EMG IHAGDF+RRFCS+LGM NQ +KAAQE VQKSEE DI
Sbjct: 183  IGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAMKAAQEAVQKSEEFDI 242

Query: 401  RRSPISVAAAVIYMVTQLSDDRKLLRDISSATGVAEGTIRNSYKDLHPYASRLIPTWFAK 222
            RRSPIS+AAAVIY+++QLSDD+KLLRDIS ATGVAEGTIRNSYKDL+P+ S++IP+W+AK
Sbjct: 243  RRSPISIAAAVIYIISQLSDDKKLLRDISHATGVAEGTIRNSYKDLYPHVSKIIPSWYAK 302

Query: 221  EEDLKNLSTP 192
            EEDLKNL +P
Sbjct: 303  EEDLKNLCSP 312