BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00007238
         (694 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003534400.1| PREDICTED: DNA-directed RNA polymerase II su...   213   3e-53
ref|NP_001240124.1| uncharacterized protein LOC100784219 [Glycin...   213   4e-53
gb|AFK46555.1| unknown [Lotus japonicus]                              212   5e-53
ref|XP_002285578.1| PREDICTED: DNA-directed RNA polymerase II su...   209   4e-52
ref|XP_004149719.1| PREDICTED: DNA-directed RNA polymerase II su...   209   6e-52

>ref|XP_003534400.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11 [Glycine
           max]
          Length = 116

 Score =  213 bits (542), Expect = 3e-53
 Identities = 101/116 (87%), Positives = 112/116 (96%)
 Frame = -2

Query: 657 MNAPERYERFVLPEGTKKVSYERDTKIINAATFTIEREDHTVGNILRMQLHRDPDILFAG 478
           MNAP+RYERFV+PEGTKKVSYERDTKIINAA+FTIERE+HT+GNILRMQLHRDP++LFAG
Sbjct: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDPNVLFAG 60

Query: 477 YKLPHPLQYKIEVRIHTSSQSSPMQAYNQAINDLDKELNHLKSAFEEETLKHSRDY 310
           YKLPHPLQYKI VRIHT+SQSSPMQAYNQ+INDLD+EL+HLKSAFE E LK SRDY
Sbjct: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQSINDLDRELDHLKSAFEAEMLKFSRDY 116


>ref|NP_001240124.1| uncharacterized protein LOC100784219 [Glycine max]
           gi|255626235|gb|ACU13462.1| unknown [Glycine max]
          Length = 116

 Score =  213 bits (541), Expect = 4e-53
 Identities = 100/116 (86%), Positives = 112/116 (96%)
 Frame = -2

Query: 657 MNAPERYERFVLPEGTKKVSYERDTKIINAATFTIEREDHTVGNILRMQLHRDPDILFAG 478
           MNAP+RYERFV+PEGTKKVSYERDTKIINAA+FTIERE+HT+GNILRMQLHRDP++LFAG
Sbjct: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDPNVLFAG 60

Query: 477 YKLPHPLQYKIEVRIHTSSQSSPMQAYNQAINDLDKELNHLKSAFEEETLKHSRDY 310
           YKLPHPLQYKI VRIHT+SQSSPMQAYNQ++NDLD+EL+HLKSAFE E LK SRDY
Sbjct: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQSVNDLDRELDHLKSAFEAEMLKFSRDY 116


>gb|AFK46555.1| unknown [Lotus japonicus]
          Length = 116

 Score =  212 bits (540), Expect = 5e-53
 Identities = 100/116 (86%), Positives = 112/116 (96%)
 Frame = -2

Query: 657 MNAPERYERFVLPEGTKKVSYERDTKIINAATFTIEREDHTVGNILRMQLHRDPDILFAG 478
           MNAP+RYERFV+PEGTKKVSYERDTKIINAA+FTIEREDHT+GNILRMQLHRDP++LFAG
Sbjct: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREDHTIGNILRMQLHRDPNVLFAG 60

Query: 477 YKLPHPLQYKIEVRIHTSSQSSPMQAYNQAINDLDKELNHLKSAFEEETLKHSRDY 310
           YKLPHPLQYKI VRIHT+SQSSPMQAYNQ+INDLDKEL+HLK+AFE + L+ SRDY
Sbjct: 61  YKLPHPLQYKIIVRIHTASQSSPMQAYNQSINDLDKELDHLKNAFEADMLRFSRDY 116


>ref|XP_002285578.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11 [Vitis
           vinifera] gi|296082163|emb|CBI21168.3| unnamed protein
           product [Vitis vinifera]
          Length = 116

 Score =  209 bits (532), Expect = 4e-52
 Identities = 98/116 (84%), Positives = 111/116 (95%)
 Frame = -2

Query: 657 MNAPERYERFVLPEGTKKVSYERDTKIINAATFTIEREDHTVGNILRMQLHRDPDILFAG 478
           MNAP+RYERFV+PEGTKKVSYERDTKIINAA+FT+EREDHT+GNILRMQLHRD ++LFAG
Sbjct: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTVEREDHTIGNILRMQLHRDENVLFAG 60

Query: 477 YKLPHPLQYKIEVRIHTSSQSSPMQAYNQAINDLDKELNHLKSAFEEETLKHSRDY 310
           YKLPHPLQYKI +RIHT+SQSSPMQAYNQAINDLDKEL++LK+AFE E  KHSR+Y
Sbjct: 61  YKLPHPLQYKIIIRIHTTSQSSPMQAYNQAINDLDKELDYLKNAFEVELAKHSREY 116


>ref|XP_004149719.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
           [Cucumis sativus] gi|449516703|ref|XP_004165386.1|
           PREDICTED: DNA-directed RNA polymerase II subunit
           RPB11-like [Cucumis sativus]
          Length = 116

 Score =  209 bits (531), Expect = 6e-52
 Identities = 100/116 (86%), Positives = 110/116 (94%)
 Frame = -2

Query: 657 MNAPERYERFVLPEGTKKVSYERDTKIINAATFTIEREDHTVGNILRMQLHRDPDILFAG 478
           MNAP+RYERFV+PEGTKKVSYERDTKIINAA+FTIERE+HT+GNILRMQLHRD ++LFAG
Sbjct: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60

Query: 477 YKLPHPLQYKIEVRIHTSSQSSPMQAYNQAINDLDKELNHLKSAFEEETLKHSRDY 310
           YKLPHPLQYKI VRIHT+SQSSPMQAYNQAINDLDKEL+HLK+AFE E  K SRDY
Sbjct: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAEFAKFSRDY 116