BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00007147
         (1238 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002518700.1| DNA-directed RNA polymerase II subunit, puta...   550   e-154
ref|XP_002285322.1| PREDICTED: DNA-directed RNA polymerase II su...   539   e-151
emb|CAN60923.1| hypothetical protein VITISV_019338 [Vitis vinifera]   539   e-151
ref|XP_002313865.1| predicted protein [Populus trichocarpa] gi|2...   529   e-148
ref|XP_003529425.1| PREDICTED: DNA-directed RNA polymerase II su...   523   e-146

>ref|XP_002518700.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
            gi|223542081|gb|EEF43625.1| DNA-directed RNA polymerase
            II subunit, putative [Ricinus communis]
          Length = 318

 Score =  550 bits (1416), Expect = e-154
 Identities = 272/321 (84%), Positives = 302/321 (94%)
 Frame = +2

Query: 77   METASYQRFPKIKIREMKDDYLKFELRDTDASLANALRRVMIAEVPTIAIDLVEIEVNST 256
            ME ASYQRFP+IKIRE+KDDY KFELRDTDAS+ANALRRVMIAEVPT+AIDLVEIEVNS+
Sbjct: 1    MEGASYQRFPRIKIRELKDDYCKFELRDTDASMANALRRVMIAEVPTVAIDLVEIEVNSS 60

Query: 257  VLNDEFIAHRLGLIPLTSDRAMGMRFSRDCDACDGDGQCEYCSVEFHLDVRCDQDQTLDV 436
            VLNDEFIAHRLGLIPLTS+RAM MRFSRDCDACDGDGQC+YCSVEFHL  +C  DQTLDV
Sbjct: 61   VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCDYCSVEFHLRAKCITDQTLDV 120

Query: 437  TSGDLISTDPSVIPVDVAARSNSAGYDASENRGIIIVKLRRGQELRLRAIARKGIGKDHA 616
            TS DL S+D +V+PVD    S+S+GYD+SE RGIIIVKLRRGQELRLRAIARKGIGKDHA
Sbjct: 121  TSKDLYSSDHTVVPVDF---SDSSGYDSSEQRGIIIVKLRRGQELRLRAIARKGIGKDHA 177

Query: 617  KWSPAATVTFMYEPEIRINEDMMESLSLDDKRNWIESSPTKVFDIDPNTQQVVVVDAEAY 796
            KWSPAATVTFMYEP+I INED+MESLSL++K++W+ESSPTKVFDIDPNTQQVVVVD EAY
Sbjct: 178  KWSPAATVTFMYEPDIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTQQVVVVDPEAY 237

Query: 797  TYDEEIIKKAEAMGKPGLVEIEAKEDSFIFTVESTGAVKASKLVVNAIDVLKQKLDAVRL 976
            TYDEE+IKKAE+MGKPGLV I+AKEDSFIFTVESTGA+KAS+LV+NAI++LKQKLDAVRL
Sbjct: 238  TYDEEVIKKAESMGKPGLVNIQAKEDSFIFTVESTGAIKASQLVLNAIEILKQKLDAVRL 297

Query: 977  SDDTVEADDQFGELGVHMRGG 1039
            S+DTVEADDQFGELG HMRGG
Sbjct: 298  SEDTVEADDQFGELGAHMRGG 318


>ref|XP_002285322.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A [Vitis
            vinifera]
          Length = 318

 Score =  539 bits (1388), Expect = e-151
 Identities = 267/321 (83%), Positives = 300/321 (93%)
 Frame = +2

Query: 77   METASYQRFPKIKIREMKDDYLKFELRDTDASLANALRRVMIAEVPTIAIDLVEIEVNST 256
            ME  SYQRFPKIKIRE+KDDY KFELR+TDAS+ANALRRVMIAEVPT+AIDLVEIEVNS+
Sbjct: 1    MEGVSYQRFPKIKIREVKDDYAKFELRETDASMANALRRVMIAEVPTVAIDLVEIEVNSS 60

Query: 257  VLNDEFIAHRLGLIPLTSDRAMGMRFSRDCDACDGDGQCEYCSVEFHLDVRCDQDQTLDV 436
            VLNDEFIAHRLGLIPLTS+RAM MRFSRDCDACDGDGQCE+CSVEFHL  +C  D+TLDV
Sbjct: 61   VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRAKCMTDETLDV 120

Query: 437  TSGDLISTDPSVIPVDVAARSNSAGYDASENRGIIIVKLRRGQELRLRAIARKGIGKDHA 616
            TS DLIS+D +V+PVD    S+S+GYD+++ +GIIIVKLRRGQELRLRAIARKGIGKDHA
Sbjct: 121  TSKDLISSDHTVVPVDF---SDSSGYDSADKKGIIIVKLRRGQELRLRAIARKGIGKDHA 177

Query: 617  KWSPAATVTFMYEPEIRINEDMMESLSLDDKRNWIESSPTKVFDIDPNTQQVVVVDAEAY 796
            KWSPAATVTFMYEPEI INED+MESL+L++K +W+ESSPTKVFDID ++QQVVV DAEAY
Sbjct: 178  KWSPAATVTFMYEPEIHINEDLMESLTLEEKTSWVESSPTKVFDIDASSQQVVVADAEAY 237

Query: 797  TYDEEIIKKAEAMGKPGLVEIEAKEDSFIFTVESTGAVKASKLVVNAIDVLKQKLDAVRL 976
            TYD+E++KKAEAMGKPGLVEI AKEDSFIFTVESTGA+KAS+LV+NAIDVLKQKLDAVRL
Sbjct: 238  TYDDEVLKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIDVLKQKLDAVRL 297

Query: 977  SDDTVEADDQFGELGVHMRGG 1039
            S+DTVEADDQFGELG HMRGG
Sbjct: 298  SEDTVEADDQFGELGAHMRGG 318


>emb|CAN60923.1| hypothetical protein VITISV_019338 [Vitis vinifera]
          Length = 318

 Score =  539 bits (1388), Expect = e-151
 Identities = 267/321 (83%), Positives = 300/321 (93%)
 Frame = +2

Query: 77   METASYQRFPKIKIREMKDDYLKFELRDTDASLANALRRVMIAEVPTIAIDLVEIEVNST 256
            ME  SYQRFPKIKIRE+KDDY KFELR+TDAS+ANALRRVMIAEVPT+AIDLVEIEVNS+
Sbjct: 1    MEGVSYQRFPKIKIREVKDDYAKFELRETDASMANALRRVMIAEVPTVAIDLVEIEVNSS 60

Query: 257  VLNDEFIAHRLGLIPLTSDRAMGMRFSRDCDACDGDGQCEYCSVEFHLDVRCDQDQTLDV 436
            VLNDEFIAHRLGLIPLTS+RAM MRFSRDCDACDGDGQCE+CSVEFHL  +C  D+TLDV
Sbjct: 61   VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCMTDETLDV 120

Query: 437  TSGDLISTDPSVIPVDVAARSNSAGYDASENRGIIIVKLRRGQELRLRAIARKGIGKDHA 616
            TS DLIS+D +V+PVD    S+S+GYD+++ +GIIIVKLRRGQELRLRAIARKGIGKDHA
Sbjct: 121  TSKDLISSDHTVVPVDF---SDSSGYDSADKKGIIIVKLRRGQELRLRAIARKGIGKDHA 177

Query: 617  KWSPAATVTFMYEPEIRINEDMMESLSLDDKRNWIESSPTKVFDIDPNTQQVVVVDAEAY 796
            KWSPAATVTFMYEPEI INED+MESL+L++K +W+ESSPTKVFDID ++QQVVV DAEAY
Sbjct: 178  KWSPAATVTFMYEPEIHINEDLMESLTLEEKTSWVESSPTKVFDIDASSQQVVVADAEAY 237

Query: 797  TYDEEIIKKAEAMGKPGLVEIEAKEDSFIFTVESTGAVKASKLVVNAIDVLKQKLDAVRL 976
            TYD+E++KKAEAMGKPGLVEI AKEDSFIFTVESTGA+KAS+LV+NAIDVLKQKLDAVRL
Sbjct: 238  TYDDEVLKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIDVLKQKLDAVRL 297

Query: 977  SDDTVEADDQFGELGVHMRGG 1039
            S+DTVEADDQFGELG HMRGG
Sbjct: 298  SEDTVEADDQFGELGAHMRGG 318


>ref|XP_002313865.1| predicted protein [Populus trichocarpa] gi|222850273|gb|EEE87820.1|
            predicted protein [Populus trichocarpa]
          Length = 346

 Score =  529 bits (1362), Expect = e-148
 Identities = 270/321 (84%), Positives = 297/321 (92%), Gaps = 2/321 (0%)
 Frame = +2

Query: 77   METASYQRFPKIKIREMKDDYLKFELRDTDASLANALRRVMIAEVPTIAIDLVEIEVNST 256
            ME+ SYQRFPKIKIREMKDDYLKFELR+TDAS+ANALRRVMIAEVPTIAIDLVEIEVNS+
Sbjct: 1    MESVSYQRFPKIKIREMKDDYLKFELRETDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60

Query: 257  VLNDEFIAHRLGLIPLTSDRAMGMRFSRDCDACDGDGQCEYCSVEFHLDVRCDQDQTLDV 436
            VLNDEFIAHRLGLIPLTS+RAMGMRFSRDCDACDGDGQCEYCSVEFHL  +C  DQTLDV
Sbjct: 61   VLNDEFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRAKCITDQTLDV 120

Query: 437  TSGDLISTDPSVIPVDVAARSNSAG-YDASEN-RGIIIVKLRRGQELRLRAIARKGIGKD 610
            TS DL S+D +VIPVD +  S++   +D +E  RGIIIVKLRRGQELRLRAIARKGIGKD
Sbjct: 121  TSKDLYSSDHAVIPVDFSDPSDANDPFDHTETQRGIIIVKLRRGQELRLRAIARKGIGKD 180

Query: 611  HAKWSPAATVTFMYEPEIRINEDMMESLSLDDKRNWIESSPTKVFDIDPNTQQVVVVDAE 790
            HAKWSPAATVTFMYEPEI INED+ME+L+L++K +WIESSPTKVFDID  TQQVVVVD E
Sbjct: 181  HAKWSPAATVTFMYEPEIHINEDLMETLTLEEKLSWIESSPTKVFDIDKVTQQVVVVDPE 240

Query: 791  AYTYDEEIIKKAEAMGKPGLVEIEAKEDSFIFTVESTGAVKASKLVVNAIDVLKQKLDAV 970
            AYTYD+E+IKKAEAMGK GL++I AKEDSFIFTVESTGAVKAS+LV+NAI++LKQKLDAV
Sbjct: 241  AYTYDDEVIKKAEAMGKRGLIDIRAKEDSFIFTVESTGAVKASQLVLNAIEILKQKLDAV 300

Query: 971  RLSDDTVEADDQFGELGVHMR 1033
            RLSDDTVEADDQFGELGVHMR
Sbjct: 301  RLSDDTVEADDQFGELGVHMR 321


>ref|XP_003529425.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
            [Glycine max]
          Length = 319

 Score =  523 bits (1348), Expect = e-146
 Identities = 258/317 (81%), Positives = 293/317 (92%)
 Frame = +2

Query: 89   SYQRFPKIKIREMKDDYLKFELRDTDASLANALRRVMIAEVPTIAIDLVEIEVNSTVLND 268
            SY R P++KIRE+KDDY KFELRDTDAS+ANALRRVMIAEVPT+AIDLVEIEVNS+VLND
Sbjct: 6    SYARMPRVKIRELKDDYAKFELRDTDASIANALRRVMIAEVPTVAIDLVEIEVNSSVLND 65

Query: 269  EFIAHRLGLIPLTSDRAMGMRFSRDCDACDGDGQCEYCSVEFHLDVRCDQDQTLDVTSGD 448
            EFIAHRLGLIPLTS+RAM MRFSRDCDACDGDGQCE+CSVEFHL V+C  DQTLDVTS D
Sbjct: 66   EFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDQTLDVTSKD 125

Query: 449  LISTDPSVIPVDVAARSNSAGYDASENRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSP 628
            L S+DP+V PVD    S+ +  D+  NRGIIIVKLRRGQEL+LRAIARKGIGKDHAKWSP
Sbjct: 126  LYSSDPTVSPVDF---SDPSATDSDNNRGIIIVKLRRGQELKLRAIARKGIGKDHAKWSP 182

Query: 629  AATVTFMYEPEIRINEDMMESLSLDDKRNWIESSPTKVFDIDPNTQQVVVVDAEAYTYDE 808
            AATVTFMYEPEI INED+ME+L+L++KR W++SSPT+VF+IDP TQQV+VVDAEAYTYD+
Sbjct: 183  AATVTFMYEPEIHINEDLMETLTLEEKREWVDSSPTRVFEIDPVTQQVMVVDAEAYTYDD 242

Query: 809  EIIKKAEAMGKPGLVEIEAKEDSFIFTVESTGAVKASKLVVNAIDVLKQKLDAVRLSDDT 988
            E++KKAEAMGKPGLVEI A++DSFIFTVESTGAVKAS+LV+NAI++LKQKLDAVRLS+DT
Sbjct: 243  EVLKKAEAMGKPGLVEIIARQDSFIFTVESTGAVKASQLVLNAIEILKQKLDAVRLSEDT 302

Query: 989  VEADDQFGELGVHMRGG 1039
            VEADDQFGELG HMRGG
Sbjct: 303  VEADDQFGELGAHMRGG 319