BLASTX nr result
ID: Cimicifuga21_contig00006993
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cimicifuga21_contig00006993
(1376 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002325862.1| predicted protein [Populus trichocarpa] gi|2... 601 e-169
ref|XP_002263213.1| PREDICTED: probable replication factor C sub... 596 e-168
ref|NP_001241064.1| uncharacterized protein LOC100818329 [Glycin... 588 e-166
ref|XP_003524588.1| PREDICTED: replication factor C subunit 3-li... 587 e-165
gb|AFK37872.1| unknown [Lotus japonicus] 585 e-165
>ref|XP_002325862.1| predicted protein [Populus trichocarpa] gi|222862737|gb|EEF00244.1|
predicted protein [Populus trichocarpa]
Length = 353
Score = 601 bits (1550), Expect = e-169
Identities = 295/354 (83%), Positives = 320/354 (90%)
Frame = +3
Query: 54 MLWVDKYRPKTLDKLIVHEDIANNLKKLVTEQDCPHLLFYGPSGSGKKTLIMAVLRQMYG 233
MLWVDKYRPKTLD++IVH++IA NLKKLVTEQDCPHLLFYGPSGSGKKTLIMA+LRQ++G
Sbjct: 1 MLWVDKYRPKTLDQVIVHQEIAENLKKLVTEQDCPHLLFYGPSGSGKKTLIMALLRQIFG 60
Query: 234 AGVEKVKLENKTWKVDAGSRTLDIELTTLSSTNHVEMNPSDVGFQDRYVVQEIIKEMAKN 413
EKVK+EN+TWK+DAGSRT+D+ELTTLSSTNHVE++PSDVGFQDRY+VQEIIKEMAKN
Sbjct: 61 TSAEKVKVENRTWKIDAGSRTIDLELTTLSSTNHVELSPSDVGFQDRYIVQEIIKEMAKN 120
Query: 414 RPIDAKGKKGYKVLVLNEVDKLSREAQHSLRRTMEKYSASCRIILCCNSSSKVTEAVRSR 593
RPID KGKKGYKVLVLNEVDKLSREAQHSLRRTMEKYSASCR+ILCCNSSSKVTEA+RSR
Sbjct: 121 RPIDTKGKKGYKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
Query: 594 CLNVRINAPTEEQIVKVLEFIGKKESLQLPPGFASRIATQSNRSLRRAVLLFETCRVQQY 773
CLNVRINAP EEQIVKVLEFIGKKE LQLPPGFA+RIA +SNRSLRRA+L FETCRVQQY
Sbjct: 181 CLNVRINAPKEEQIVKVLEFIGKKEGLQLPPGFAARIADKSNRSLRRAILSFETCRVQQY 240
Query: 774 PFTSNQAIPPMDWEQYVSEIASDIMQEQSPKRLFMVRGKLYELLINCIPAXXXXXXXXXX 953
PF+SNQAIPPMDWE+YVSEI SDIM+EQSPKRLF VRGKLYELLINCIP
Sbjct: 241 PFSSNQAIPPMDWEEYVSEICSDIMREQSPKRLFQVRGKLYELLINCIP-PEIILKLLSE 299
Query: 954 XXXXXXXXXXXXVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKAFLIATFG 1115
VCHWAAYYEHRMR+GQKAIFH+EAFVAKFMSIYKAFLIATFG
Sbjct: 300 LLKKLDEELKHEVCHWAAYYEHRMRMGQKAIFHLEAFVAKFMSIYKAFLIATFG 353
>ref|XP_002263213.1| PREDICTED: probable replication factor C subunit 3 [Vitis vinifera]
gi|296089274|emb|CBI39046.3| unnamed protein product
[Vitis vinifera]
Length = 354
Score = 596 bits (1536), Expect = e-168
Identities = 289/354 (81%), Positives = 315/354 (88%)
Frame = +3
Query: 54 MLWVDKYRPKTLDKLIVHEDIANNLKKLVTEQDCPHLLFYGPSGSGKKTLIMAVLRQMYG 233
MLWVDKYRPKTLD LIVH+D+A NLKKLVTEQDCPHLLFYGP GSGKKTLIMA+LRQM+G
Sbjct: 1 MLWVDKYRPKTLDNLIVHDDVAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMAILRQMFG 60
Query: 234 AGVEKVKLENKTWKVDAGSRTLDIELTTLSSTNHVEMNPSDVGFQDRYVVQEIIKEMAKN 413
+KVK+ENKTWK+DAG+RT+D+ELTTLSST+H+E+NP D GFQDRY+VQEIIKEMAKN
Sbjct: 61 PSADKVKVENKTWKIDAGTRTIDLELTTLSSTHHMELNPGDAGFQDRYIVQEIIKEMAKN 120
Query: 414 RPIDAKGKKGYKVLVLNEVDKLSREAQHSLRRTMEKYSASCRIILCCNSSSKVTEAVRSR 593
RPID KGKKG++VLVLNEVD+LSREAQHSLRRTMEKYSASCR+ILCCNSSSKVTEAVRSR
Sbjct: 121 RPIDTKGKKGFRVLVLNEVDRLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAVRSR 180
Query: 594 CLNVRINAPTEEQIVKVLEFIGKKESLQLPPGFASRIATQSNRSLRRAVLLFETCRVQQY 773
CLN+RINAPTEEQI KVLEFI KKE LQLP GFA+RIA +SNRSLRRA+L FETCRVQQY
Sbjct: 181 CLNIRINAPTEEQITKVLEFIAKKEGLQLPSGFATRIAEKSNRSLRRAILSFETCRVQQY 240
Query: 774 PFTSNQAIPPMDWEQYVSEIASDIMQEQSPKRLFMVRGKLYELLINCIPAXXXXXXXXXX 953
PFT+NQA+PPMDWE+YVSEIASDIM+EQSPKRLF VRGKLYELLINCIP
Sbjct: 241 PFTNNQAMPPMDWEEYVSEIASDIMKEQSPKRLFQVRGKLYELLINCIPPEIILKRLLLE 300
Query: 954 XXXXXXXXXXXXVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKAFLIATFG 1115
VCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKAFLIATFG
Sbjct: 301 LLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKAFLIATFG 354
>ref|NP_001241064.1| uncharacterized protein LOC100818329 [Glycine max]
gi|255645652|gb|ACU23320.1| unknown [Glycine max]
Length = 354
Score = 588 bits (1517), Expect = e-166
Identities = 284/354 (80%), Positives = 316/354 (89%)
Frame = +3
Query: 54 MLWVDKYRPKTLDKLIVHEDIANNLKKLVTEQDCPHLLFYGPSGSGKKTLIMAVLRQMYG 233
MLWVDKYRPKTLD+++VH DIA NLKKLVTEQDCPHLLFYGPSGSGKKTLIMA+LRQM+G
Sbjct: 1 MLWVDKYRPKTLDQVMVHTDIARNLKKLVTEQDCPHLLFYGPSGSGKKTLIMALLRQMFG 60
Query: 234 AGVEKVKLENKTWKVDAGSRTLDIELTTLSSTNHVEMNPSDVGFQDRYVVQEIIKEMAKN 413
G EKVK++N+TWKVDAGSR+LD+ELTTLSS NH+EM+PSD GFQDRY+VQE+IKEMAKN
Sbjct: 61 PGAEKVKVDNRTWKVDAGSRSLDLELTTLSSANHIEMSPSDAGFQDRYIVQEVIKEMAKN 120
Query: 414 RPIDAKGKKGYKVLVLNEVDKLSREAQHSLRRTMEKYSASCRIILCCNSSSKVTEAVRSR 593
RPID KGKKG+KVLVLN+VDKLSREAQHSLRRTMEKYSA CR+ILCCNSSS+VTEA+RSR
Sbjct: 121 RPIDTKGKKGFKVLVLNDVDKLSREAQHSLRRTMEKYSAYCRLILCCNSSSRVTEAIRSR 180
Query: 594 CLNVRINAPTEEQIVKVLEFIGKKESLQLPPGFASRIATQSNRSLRRAVLLFETCRVQQY 773
CLNVRINAP+EEQIV+VLEFIGKKE LQLPPGFA+RI +SNR+LRRA+L FETCRVQQY
Sbjct: 181 CLNVRINAPSEEQIVEVLEFIGKKEGLQLPPGFAARIVEKSNRNLRRAILSFETCRVQQY 240
Query: 774 PFTSNQAIPPMDWEQYVSEIASDIMQEQSPKRLFMVRGKLYELLINCIPAXXXXXXXXXX 953
PFT+ Q IPPMDWE+Y+SEIASDIM+EQSPKRLF VRGKLYELLINCIP
Sbjct: 241 PFTNKQTIPPMDWEEYISEIASDIMKEQSPKRLFQVRGKLYELLINCIPPEIILKRLLYE 300
Query: 954 XXXXXXXXXXXXVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKAFLIATFG 1115
VCHWAAYYE+RMRLGQKAIFHIEAFVAKFMSIYK+FLI+TFG
Sbjct: 301 LLRKLDAELKHEVCHWAAYYEYRMRLGQKAIFHIEAFVAKFMSIYKSFLISTFG 354
>ref|XP_003524588.1| PREDICTED: replication factor C subunit 3-like [Glycine max]
Length = 354
Score = 587 bits (1514), Expect = e-165
Identities = 285/354 (80%), Positives = 317/354 (89%)
Frame = +3
Query: 54 MLWVDKYRPKTLDKLIVHEDIANNLKKLVTEQDCPHLLFYGPSGSGKKTLIMAVLRQMYG 233
MLWVDKYRPKTLD+++VH DIA+NLKKLVTEQD PHLLFYGPSGSGKKTLIMA+LRQM+G
Sbjct: 1 MLWVDKYRPKTLDQVMVHTDIAHNLKKLVTEQDSPHLLFYGPSGSGKKTLIMALLRQMFG 60
Query: 234 AGVEKVKLENKTWKVDAGSRTLDIELTTLSSTNHVEMNPSDVGFQDRYVVQEIIKEMAKN 413
G EKVK+EN+TWK+DAGSR+LD+ELTTLSS NH+EM+PSD GFQDRY+VQE+IKEMAKN
Sbjct: 61 PGAEKVKVENRTWKIDAGSRSLDLELTTLSSANHIEMSPSDAGFQDRYIVQEVIKEMAKN 120
Query: 414 RPIDAKGKKGYKVLVLNEVDKLSREAQHSLRRTMEKYSASCRIILCCNSSSKVTEAVRSR 593
RPID KGKKG+KVLVLN+VDKLSREAQHSLRRTMEKYSA CR+ILCCNSSS+VTEA+RSR
Sbjct: 121 RPIDTKGKKGFKVLVLNDVDKLSREAQHSLRRTMEKYSAYCRLILCCNSSSRVTEAIRSR 180
Query: 594 CLNVRINAPTEEQIVKVLEFIGKKESLQLPPGFASRIATQSNRSLRRAVLLFETCRVQQY 773
CLNVRINAP+EEQIV+VLEFIGKKE LQLPPGFA+RIA +SNR+LRRA+L FETCRV QY
Sbjct: 181 CLNVRINAPSEEQIVQVLEFIGKKEGLQLPPGFAARIAEKSNRNLRRAILSFETCRVLQY 240
Query: 774 PFTSNQAIPPMDWEQYVSEIASDIMQEQSPKRLFMVRGKLYELLINCIPAXXXXXXXXXX 953
PFT+ QAIPPMDWE+Y+SEIASDIM+EQSPKRLF VRGKLYELLINCIP
Sbjct: 241 PFTNKQAIPPMDWEEYISEIASDIMKEQSPKRLFQVRGKLYELLINCIPPEIILKRLLYE 300
Query: 954 XXXXXXXXXXXXVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKAFLIATFG 1115
VCHWAAYYE+RMRLGQKAIFHIEAFVAKFMSIYK+FLIATFG
Sbjct: 301 LLRKLDAELKHEVCHWAAYYEYRMRLGQKAIFHIEAFVAKFMSIYKSFLIATFG 354
>gb|AFK37872.1| unknown [Lotus japonicus]
Length = 354
Score = 585 bits (1508), Expect = e-165
Identities = 280/354 (79%), Positives = 316/354 (89%)
Frame = +3
Query: 54 MLWVDKYRPKTLDKLIVHEDIANNLKKLVTEQDCPHLLFYGPSGSGKKTLIMAVLRQMYG 233
MLWVDKYRPKTLD+++VH+D+A NLKKLVTEQDCPHLLFYGPSGSGKKTLIMA+LRQM+G
Sbjct: 1 MLWVDKYRPKTLDQVMVHDDVAQNLKKLVTEQDCPHLLFYGPSGSGKKTLIMALLRQMFG 60
Query: 234 AGVEKVKLENKTWKVDAGSRTLDIELTTLSSTNHVEMNPSDVGFQDRYVVQEIIKEMAKN 413
EKVK+EN+TWKVDAGSR++D+ELTTLSS +H+EM+PSD GFQDRYVVQEIIKEMAKN
Sbjct: 61 TAAEKVKVENRTWKVDAGSRSIDLELTTLSSAHHIEMSPSDAGFQDRYVVQEIIKEMAKN 120
Query: 414 RPIDAKGKKGYKVLVLNEVDKLSREAQHSLRRTMEKYSASCRIILCCNSSSKVTEAVRSR 593
RPID KGKKG+KVLVLN+VDKLSREAQHSLRRTMEKYSA CR+ILCCNSSS+VTEA+RSR
Sbjct: 121 RPIDTKGKKGFKVLVLNDVDKLSREAQHSLRRTMEKYSAYCRLILCCNSSSRVTEAIRSR 180
Query: 594 CLNVRINAPTEEQIVKVLEFIGKKESLQLPPGFASRIATQSNRSLRRAVLLFETCRVQQY 773
CLN+RINAP+EEQIV+V+EFIGKKE LQ+P GFA+RIA +SNR+LRRA+L FETCRVQQY
Sbjct: 181 CLNIRINAPSEEQIVEVIEFIGKKEGLQIPSGFAARIAEKSNRNLRRAILSFETCRVQQY 240
Query: 774 PFTSNQAIPPMDWEQYVSEIASDIMQEQSPKRLFMVRGKLYELLINCIPAXXXXXXXXXX 953
PFT+ Q IPPMDWE+Y+SEIASDIM+EQ+PKRLF VRGKLYELLINCIP
Sbjct: 241 PFTNRQTIPPMDWEEYISEIASDIMKEQNPKRLFQVRGKLYELLINCIPPEMILKRLLFE 300
Query: 954 XXXXXXXXXXXXVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKAFLIATFG 1115
VCHWAAYYEHRMRLGQKAIFHIEAFVAKFMS+YK+FLIATFG
Sbjct: 301 LLRKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSVYKSFLIATFG 354