BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00006883
         (1261 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002513193.1| ribonucleoprotein, chloroplast, putative [Ri...   297   3e-78
ref|XP_002314019.1| predicted protein [Populus trichocarpa] gi|2...   287   3e-75
gb|ABK96373.1| unknown [Populus trichocarpa x Populus deltoides]      286   8e-75
ref|XP_002265629.1| PREDICTED: 30S ribosomal protein 2, chloropl...   286   8e-75
ref|XP_003546870.1| PREDICTED: 30S ribosomal protein 2, chloropl...   275   2e-71

>ref|XP_002513193.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
           gi|223547691|gb|EEF49184.1| ribonucleoprotein,
           chloroplast, putative [Ricinus communis]
          Length = 256

 Score =  297 bits (761), Expect = 3e-78
 Identities = 170/259 (65%), Positives = 194/259 (74%), Gaps = 6/259 (2%)
 Frame = +2

Query: 107 MATISSFLTSNLLSQPKISIKIQALPSKPSFQIPKPTT-LRHFNGFSVSPLFLNPKETSK 283
           MATISS L S L +  K ++    LP KP+F I KPTT   +F+ FS   + LNP+   +
Sbjct: 1   MATISS-LASILPTSTKFTL-FTNLP-KPTFLILKPTTHFINFSKFSHLDVVLNPRVPRR 57

Query: 284 LYAVAEETSVVT-----TSEAARRLYVGNIPRTVDNSELKKIFEEHGAVEKAEVMYDKYS 448
           L+AVAEE + V      +SEAA+RLY+GNIPRTVDN EL KI EEHGAVEKAEVMYDKYS
Sbjct: 58  LFAVAEEAAPVAPPPDPSSEAAKRLYIGNIPRTVDNDELTKIVEEHGAVEKAEVMYDKYS 117

Query: 449 KRSRRFAFVTMKTVEDATAATEKMNGTEIGGREIKVNVTEKPLTTVDASLLQAEESQFVD 628
            RSRRFAFVTM+TVEDA A  EK+NGT+IGGREIKVN+TEKPL + D S LQ EESQFVD
Sbjct: 118 GRSRRFAFVTMRTVEDANAVIEKLNGTQIGGREIKVNITEKPLASGDLSFLQLEESQFVD 177

Query: 629 SPHKVYVGNLAKTVTSDMLSKFFSEMGKVLGAKISRVPXXXXXXXXXXXXXXXDEDVEAA 808
           SPHKVYVGNLAKTVTS++L  FFSE GKVL AK+SRVP               +EDVEAA
Sbjct: 178 SPHKVYVGNLAKTVTSEILKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVSFSEEEDVEAA 237

Query: 809 ISSLNNTLLEGQKIRVNKA 865
           ISS NN+LLEGQKIRVNKA
Sbjct: 238 ISSFNNSLLEGQKIRVNKA 256


>ref|XP_002314019.1| predicted protein [Populus trichocarpa] gi|222850427|gb|EEE87974.1|
           predicted protein [Populus trichocarpa]
          Length = 255

 Score =  287 bits (735), Expect = 3e-75
 Identities = 164/258 (63%), Positives = 187/258 (72%), Gaps = 5/258 (1%)
 Frame = +2

Query: 107 MATISSFLTSNLLSQPKISIKIQALPSKPSFQIPKPTT-LRHFNGFSVSPLFLNPKETSK 283
           MATISS LT+ L +  K+++      SKPSFQI KP     HF  F+     LN K   +
Sbjct: 1   MATISS-LTTPLPTSTKLALSRNQ--SKPSFQILKPANPFNHFPKFTHLHKILNTKAPQR 57

Query: 284 LYAVAEETS----VVTTSEAARRLYVGNIPRTVDNSELKKIFEEHGAVEKAEVMYDKYSK 451
           L+AVAEET+    V  +SEAARRLYVGNIPRT+ N EL KI EEHGAVEKAEVMYDKYS 
Sbjct: 58  LFAVAEETAPAAAVDPSSEAARRLYVGNIPRTLTNEELTKIVEEHGAVEKAEVMYDKYSG 117

Query: 452 RSRRFAFVTMKTVEDATAATEKMNGTEIGGREIKVNVTEKPLTTVDASLLQAEESQFVDS 631
           RSRRFAFVTMKT EDA AA EK+NGTEIGGREIKVN+TEKPL ++D   LQ++ESQFVDS
Sbjct: 118 RSRRFAFVTMKTAEDANAAIEKLNGTEIGGREIKVNITEKPLQSLDLPSLQSDESQFVDS 177

Query: 632 PHKVYVGNLAKTVTSDMLSKFFSEMGKVLGAKISRVPXXXXXXXXXXXXXXXDEDVEAAI 811
           P+KVYVGNLAKTV +D L  FFS+ G VL AK+SRVP               +EDVE AI
Sbjct: 178 PYKVYVGNLAKTVATDTLKNFFSKKGNVLSAKVSRVPGTSKSSGFGFVTFSSEEDVEVAI 237

Query: 812 SSLNNTLLEGQKIRVNKA 865
           SS NN+LLEGQ IRVNKA
Sbjct: 238 SSFNNSLLEGQPIRVNKA 255


>gb|ABK96373.1| unknown [Populus trichocarpa x Populus deltoides]
          Length = 255

 Score =  286 bits (732), Expect = 8e-75
 Identities = 163/258 (63%), Positives = 187/258 (72%), Gaps = 5/258 (1%)
 Frame = +2

Query: 107 MATISSFLTSNLLSQPKISIKIQALPSKPSFQIPKPTT-LRHFNGFSVSPLFLNPKETSK 283
           MATISS LT+ L +  K+++      SKPSFQI KP     HF  F+     LN K   +
Sbjct: 1   MATISS-LTTPLPTSTKLALSRNQ--SKPSFQILKPANPFNHFPKFTHLHKILNTKAPQR 57

Query: 284 LYAVAEETS----VVTTSEAARRLYVGNIPRTVDNSELKKIFEEHGAVEKAEVMYDKYSK 451
           L+AVAEET+    V  +SEAARRLYVGNIPRT+ N EL KI EEHGAVEKAEVMYDKYS 
Sbjct: 58  LFAVAEETAPAAAVDPSSEAARRLYVGNIPRTLTNEELTKIVEEHGAVEKAEVMYDKYSG 117

Query: 452 RSRRFAFVTMKTVEDATAATEKMNGTEIGGREIKVNVTEKPLTTVDASLLQAEESQFVDS 631
           RSRRFAFVTMKT EDA AA EK+NGTEIGGREIKVN+TEKPL ++D   LQ++E+QFVDS
Sbjct: 118 RSRRFAFVTMKTAEDANAAIEKLNGTEIGGREIKVNITEKPLQSLDLPSLQSDETQFVDS 177

Query: 632 PHKVYVGNLAKTVTSDMLSKFFSEMGKVLGAKISRVPXXXXXXXXXXXXXXXDEDVEAAI 811
           P+KVYVGNLAKTV +D L  FFS+ G VL AK+SRVP               +EDVE AI
Sbjct: 178 PYKVYVGNLAKTVATDTLKNFFSKKGNVLSAKVSRVPGTSKSSGFGFVTFSSEEDVEVAI 237

Query: 812 SSLNNTLLEGQKIRVNKA 865
           SS NN+LLEGQ IRVNKA
Sbjct: 238 SSFNNSLLEGQPIRVNKA 255


>ref|XP_002265629.1| PREDICTED: 30S ribosomal protein 2, chloroplastic [Vitis vinifera]
           gi|297736206|emb|CBI24844.3| unnamed protein product
           [Vitis vinifera]
          Length = 247

 Score =  286 bits (732), Expect = 8e-75
 Identities = 163/254 (64%), Positives = 184/254 (72%), Gaps = 1/254 (0%)
 Frame = +2

Query: 107 MATISSFLTSNLLSQPKISIKIQALPSKPSFQIPKPTTLRHFNGFSVSPLFLNPKETSKL 286
           MA ISS  +  LL  P    K   L SKPS Q  KP    HF   SV+   + PK    +
Sbjct: 1   MAAISSLFSQTLLHHPT---KTLTLHSKPSIQPLKPF---HFLN-SVTFKAIKPKRPIAV 53

Query: 287 YAVAEETSVVTTSEAARRLYVGNIPRTVDNSELKKIFEEHGAVEKAEVMYDKYSKRSRRF 466
            AV  E  V T+  AARRLYVGNIPRT+D++EL +I EEHGAVEKAEVMYDKYS RSRRF
Sbjct: 54  SAVTAEAPVATSDVAARRLYVGNIPRTLDSAELARIVEEHGAVEKAEVMYDKYSGRSRRF 113

Query: 467 AFVTMKTVEDATAATEKMNGTEIGGREIKVNVTEKPLTTVDASLLQAEESQFVDSPHKVY 646
           AFVTMKTVEDA AA EK+NGTEIGGREIKVN+TEKPL T+D SLLQAEESQF+DSPHKVY
Sbjct: 114 AFVTMKTVEDANAAIEKLNGTEIGGREIKVNITEKPLLTLDMSLLQAEESQFIDSPHKVY 173

Query: 647 VGNLAKTVTSDMLSKFFSEM-GKVLGAKISRVPXXXXXXXXXXXXXXXDEDVEAAISSLN 823
           VGNLA+TVT+D L++FFSE  GKVL AK+SRVP               +EDVEAAISS N
Sbjct: 174 VGNLARTVTTDTLTQFFSEKGGKVLSAKVSRVPGTSKSSGFGFVSFSSEEDVEAAISSCN 233

Query: 824 NTLLEGQKIRVNKA 865
           N  L+GQ+IRVNKA
Sbjct: 234 NAFLDGQRIRVNKA 247


>ref|XP_003546870.1| PREDICTED: 30S ribosomal protein 2, chloroplastic-like [Glycine
           max]
          Length = 246

 Score =  275 bits (702), Expect = 2e-71
 Identities = 163/262 (62%), Positives = 180/262 (68%), Gaps = 9/262 (3%)
 Frame = +2

Query: 107 MATI-SSFLTS-NLLSQPKISIKIQALPSKPSFQI-----PKPTTLRHFNGFSVSPLFLN 265
           MA++ SSFL   NLLS           PS  S QI     P  T LR        PL L 
Sbjct: 1   MASVHSSFLLPYNLLSL--------TTPSSSSTQILFTARPSATHLR--------PLLLT 44

Query: 266 PKETS--KLYAVAEETSVVTTSEAARRLYVGNIPRTVDNSELKKIFEEHGAVEKAEVMYD 439
            +  S  + +A   E +   T  AARRLYVGNIPRTV N EL KI +EHGAVEKAEVMYD
Sbjct: 45  TRRRSGRRPFAAVAEQAATATEAAARRLYVGNIPRTVTNDELAKIVQEHGAVEKAEVMYD 104

Query: 440 KYSKRSRRFAFVTMKTVEDATAATEKMNGTEIGGREIKVNVTEKPLTTVDASLLQAEESQ 619
           KYS RSRRFAFVTMKTVEDATA  EK+NGTE+GGREIKVNVTEKPL+T+D  LLQAEES+
Sbjct: 105 KYSGRSRRFAFVTMKTVEDATAVIEKLNGTELGGREIKVNVTEKPLSTLDLPLLQAEESE 164

Query: 620 FVDSPHKVYVGNLAKTVTSDMLSKFFSEMGKVLGAKISRVPXXXXXXXXXXXXXXXDEDV 799
           F+DSPHKVYVGNLAKTVT+D L  FFSE GKVL AK+SRVP               +EDV
Sbjct: 165 FIDSPHKVYVGNLAKTVTTDTLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFPSEEDV 224

Query: 800 EAAISSLNNTLLEGQKIRVNKA 865
           EAAISS NN+LLEGQ IRVNKA
Sbjct: 225 EAAISSFNNSLLEGQTIRVNKA 246