BLASTX nr result
ID: Cimicifuga21_contig00006805
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cimicifuga21_contig00006805
(735 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002300987.1| hypothetical protein POPTRDRAFT_816277 [Popu... 77 5e-24
gb|AFK43146.1| unknown [Lotus japonicus] 72 6e-23
sp|Q9FPP4.1|PSBS_SOLSG RecName: Full=Photosystem II 22 kDa prote... 76 4e-22
ref|XP_003602031.1| Photosystem II 22 kDa protein [Medicago trun... 71 7e-22
gb|ACJ84782.1| unknown [Medicago truncatula] 71 7e-22
>ref|XP_002300987.1| hypothetical protein POPTRDRAFT_816277 [Populus trichocarpa]
gi|118488707|gb|ABK96164.1| unknown [Populus
trichocarpa] gi|222842713|gb|EEE80260.1| hypothetical
protein POPTRDRAFT_816277 [Populus trichocarpa]
Length = 272
Score = 77.4 bits (189), Expect(2) = 5e-24
Identities = 38/51 (74%), Positives = 40/51 (78%)
Frame = +1
Query: 580 ITGKGILSQLNIETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGRFVDDPS 732
ITGKGILSQLN+ETGIPIYEAEP GAIGALGDRGRFVDDP+
Sbjct: 118 ITGKGILSQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGRFVDDPT 168
Score = 60.1 bits (144), Expect(2) = 5e-24
Identities = 51/123 (41%), Positives = 59/123 (47%), Gaps = 10/123 (8%)
Frame = +2
Query: 152 MAQTMMLMSSVAGHGL-DLKRVPLLQ----SLKPKPFSHFLLPP----SSHQHRFXXXXX 304
MAQTM+LMS V+ + DLKR PLLQ L+P PFS L P +S + F
Sbjct: 1 MAQTMVLMSGVSTRQVVDLKRDPLLQFQVQRLRPAPFSRLLYNPLPSKASSSNAFTT--- 57
Query: 305 XXXXIAIFXXXXXXXXXXXXXXXXXXX-DXXXXXXXXXXXXKQNELFVGRVAMIGFAASL 481
+A+F D KQNELFVGRVAMIGFAASL
Sbjct: 58 ----LALFKPRTKAVPKKAAPPPKPKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASL 113
Query: 482 LGE 490
LGE
Sbjct: 114 LGE 116
Score = 41.2 bits (95), Expect(2) = 9e-06
Identities = 23/49 (46%), Positives = 27/49 (55%)
Frame = +1
Query: 580 ITGKGILSQLNIETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGRFVDD 726
ITGKG L+QLNIETGIP+ E EP A+ G+FV D
Sbjct: 222 ITGKGALAQLNIETGIPVNEIEPLVLFNVLFFFIAALNP--GTGKFVTD 268
Score = 34.3 bits (77), Expect(2) = 9e-06
Identities = 15/22 (68%), Positives = 18/22 (81%)
Frame = +2
Query: 425 KQNELFVGRVAMIGFAASLLGE 490
K NELFVGR+A +G A SL+GE
Sbjct: 199 KSNELFVGRLAQLGIAFSLIGE 220
>gb|AFK43146.1| unknown [Lotus japonicus]
Length = 273
Score = 72.4 bits (176), Expect(2) = 6e-23
Identities = 35/51 (68%), Positives = 39/51 (76%)
Frame = +1
Query: 580 ITGKGILSQLNIETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGRFVDDPS 732
+TGKGIL+QLN+ETGIPIYEAEP GAIGALGDRG+FVDD S
Sbjct: 118 LTGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDDES 168
Score = 61.2 bits (147), Expect(2) = 6e-23
Identities = 48/118 (40%), Positives = 57/118 (48%), Gaps = 5/118 (4%)
Frame = +2
Query: 152 MAQTMMLMSSVAG-HGLDLKRVPLL----QSLKPKPFSHFLLPPSSHQHRFXXXXXXXXX 316
MAQTM+LMSSV+ + +DLK+ PLL Q L+PK P S+ F
Sbjct: 1 MAQTMLLMSSVSSSYSVDLKKDPLLHLQSQRLRPKFSQLSFNPLPSNSSLFSSRTFTT-- 58
Query: 317 IAIFXXXXXXXXXXXXXXXXXXXDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLLGE 490
+A+F D KQNELFVGRVAMIGFAASLLGE
Sbjct: 59 LALFKSKAKAPPPKVVKQKPKVEDGVFGTSGGIGFTKQNELFVGRVAMIGFAASLLGE 116
Score = 42.0 bits (97), Expect(2) = 1e-06
Identities = 24/49 (48%), Positives = 27/49 (55%)
Frame = +1
Query: 580 ITGKGILSQLNIETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGRFVDD 726
ITGKG L+QLNIETGIPI E EP A+ G+FV D
Sbjct: 223 ITGKGALAQLNIETGIPINEIEPLVLFNVAFFFIAALNP--GTGKFVSD 269
Score = 36.6 bits (83), Expect(2) = 1e-06
Identities = 16/22 (72%), Positives = 19/22 (86%)
Frame = +2
Query: 425 KQNELFVGRVAMIGFAASLLGE 490
K NELFVGR+A +GFA SL+GE
Sbjct: 200 KSNELFVGRLAQLGFAFSLIGE 221
>sp|Q9FPP4.1|PSBS_SOLSG RecName: Full=Photosystem II 22 kDa protein, chloroplastic;
AltName: Full=CP22; Flags: Precursor
gi|12082782|gb|AAG48610.1|AF311720_1 photosystem II 22
kDa protein precursor [Solanum sogarandinum]
Length = 276
Score = 75.9 bits (185), Expect(2) = 4e-22
Identities = 36/51 (70%), Positives = 40/51 (78%)
Frame = +1
Query: 580 ITGKGILSQLNIETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGRFVDDPS 732
ITGKGIL+QLN+ETGIPIYEAEP GAIGALGDRGRF+DDP+
Sbjct: 120 ITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALGDRGRFIDDPA 170
Score = 55.1 bits (131), Expect(2) = 4e-22
Identities = 45/121 (37%), Positives = 55/121 (45%), Gaps = 8/121 (6%)
Frame = +2
Query: 152 MAQTMMLMSSVAGHGLDLK-RVPLLQSLKPKPFSHFLLPP-----SSHQHRFXXXXXXXX 313
MAQTM+L ++ +DL+ + L++ LKPKP S LP SS F
Sbjct: 1 MAQTMLLTANAK---VDLRSKESLVERLKPKPLSSLFLPSLPLRFSSSTTNFSSSKFTST 57
Query: 314 XIAIFXXXXXXXXXXXXXXXXXXX--DXXXXXXXXXXXXKQNELFVGRVAMIGFAASLLG 487
+A+F D KQNELFVGRVAMIGFAASLLG
Sbjct: 58 TVALFKSKAKAPPKKVAPPKEKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLG 117
Query: 488 E 490
E
Sbjct: 118 E 118
>ref|XP_003602031.1| Photosystem II 22 kDa protein [Medicago truncatula]
gi|355491079|gb|AES72282.1| Photosystem II 22 kDa
protein [Medicago truncatula]
gi|388508062|gb|AFK42097.1| unknown [Medicago
truncatula]
Length = 270
Score = 71.2 bits (173), Expect(2) = 7e-22
Identities = 34/49 (69%), Positives = 38/49 (77%)
Frame = +1
Query: 580 ITGKGILSQLNIETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGRFVDD 726
+TGKGIL+QLN+ETGIPIYEAEP GAIGALGDRG+FVDD
Sbjct: 118 LTGKGILAQLNLETGIPIYEAEPLLLFFIIFTLLGAIGALGDRGKFVDD 166
Score = 58.9 bits (141), Expect(2) = 7e-22
Identities = 46/118 (38%), Positives = 57/118 (48%), Gaps = 5/118 (4%)
Frame = +2
Query: 152 MAQTMMLMSSVAG-HGLDLKRVPLLQ----SLKPKPFSHFLLPPSSHQHRFXXXXXXXXX 316
MAQTM+LMSSV+ + +DLK+ PLLQ L+P+ P S+ F
Sbjct: 1 MAQTMLLMSSVSSTYSVDLKKDPLLQLQCQRLRPRFSDVSFNPLPSNSKCFSSRTFTT-- 58
Query: 317 IAIFXXXXXXXXXXXXXXXXXXXDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLLGE 490
+A+F D KQNELFVGRVAMIGFAAS+LGE
Sbjct: 59 LALFKSKTKAPAKVVKKPKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASILGE 116
Score = 40.4 bits (93), Expect(2) = 9e-06
Identities = 18/23 (78%), Positives = 20/23 (86%)
Frame = +1
Query: 580 ITGKGILSQLNIETGIPIYEAEP 648
ITGKG L+QLNIETG+PI E EP
Sbjct: 220 ITGKGALAQLNIETGVPITEIEP 242
Score = 35.0 bits (79), Expect(2) = 9e-06
Identities = 15/22 (68%), Positives = 18/22 (81%)
Frame = +2
Query: 425 KQNELFVGRVAMIGFAASLLGE 490
K NELFVGR+A +GF SL+GE
Sbjct: 197 KSNELFVGRLAQLGFVFSLIGE 218
>gb|ACJ84782.1| unknown [Medicago truncatula]
Length = 262
Score = 71.2 bits (173), Expect(2) = 7e-22
Identities = 34/49 (69%), Positives = 38/49 (77%)
Frame = +1
Query: 580 ITGKGILSQLNIETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGRFVDD 726
+TGKGIL+QLN+ETGIPIYEAEP GAIGALGDRG+FVDD
Sbjct: 118 LTGKGILAQLNLETGIPIYEAEPLLLFFIIFTLLGAIGALGDRGKFVDD 166
Score = 58.9 bits (141), Expect(2) = 7e-22
Identities = 46/118 (38%), Positives = 57/118 (48%), Gaps = 5/118 (4%)
Frame = +2
Query: 152 MAQTMMLMSSVAG-HGLDLKRVPLLQ----SLKPKPFSHFLLPPSSHQHRFXXXXXXXXX 316
MAQTM+LMSSV+ + +DLK+ PLLQ L+P+ P S+ F
Sbjct: 1 MAQTMLLMSSVSSTYSVDLKKDPLLQLQCQRLRPRFSDVSFNPLPSNSKCFSSRTFTT-- 58
Query: 317 IAIFXXXXXXXXXXXXXXXXXXXDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLLGE 490
+A+F D KQNELFVGRVAMIGFAAS+LGE
Sbjct: 59 LALFKSKTKAPAKVVKKPKPKVEDGIFGTSRGFGFTKQNELFVGRVAMIGFAASILGE 116
Score = 40.4 bits (93), Expect(2) = 9e-06
Identities = 18/23 (78%), Positives = 20/23 (86%)
Frame = +1
Query: 580 ITGKGILSQLNIETGIPIYEAEP 648
ITGKG L+QLNIETG+PI E EP
Sbjct: 220 ITGKGALAQLNIETGVPITEIEP 242
Score = 35.0 bits (79), Expect(2) = 9e-06
Identities = 15/22 (68%), Positives = 18/22 (81%)
Frame = +2
Query: 425 KQNELFVGRVAMIGFAASLLGE 490
K NELFVGR+A +GF SL+GE
Sbjct: 197 KSNELFVGRLAQLGFVFSLIGE 218