BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00006714
         (1031 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CCA65997.1| hypothetical protein [Beta vulgaris subsp. vulga...    77   4e-17
gb|ABD28505.2| RNA-directed DNA polymerase (Reverse transcriptas...    54   3e-12
gb|ABE65462.1| hypothetical protein At2g27870 [Arabidopsis thali...    62   3e-11
gb|ABK28199.1| unknown [Arabidopsis thaliana]                          62   5e-11
gb|AAD21515.1| putative reverse transcriptase [Arabidopsis thali...    62   5e-11

>emb|CCA65997.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1363

 Score = 77.0 bits (188), Expect(2) = 4e-17
 Identities = 48/172 (27%), Positives = 81/172 (47%), Gaps = 8/172 (4%)
 Frame = +3

Query: 75   LWKMNVPMKRRFFIWQIATNVLPTAKFLLSRGCDVKHDCSLCEMGVDDGLHMFRDCSYAR 254
            LW+ N+P K +  IW    N+LPTA FL  R  +    C  C+  ++D +H+FRDC  A 
Sbjct: 1041 LWRKNIPFKYKLLIWNGIHNILPTALFLAKRIHNFNPQCVACDHPIEDMIHLFRDCCVAS 1100

Query: 255  AVWLV*SLKEVTRMDHGGGYDVWFHGVLDS-LRHKVSKICH-VTVFVLGMWFIWVTRNSN 428
            +VW+     E+ +       +++F+   +  +   +++  + VT F    W IW +RN  
Sbjct: 1101 SVWI-----EILKHHKPNNQNLFFNLEWEEWIDFNLNQHDYWVTKFTTAFWHIWCSRNKT 1155

Query: 429  RFTGSLSHPGSAANLVWNMYGDMDWSARHVEVS------KPLSIAWIPPDGG 566
             F  +++HP    N V     D   + R  +V+        + + W PP  G
Sbjct: 1156 VFECAVNHPKFTYNRV---VADFFTNIRAFQVNNTQGNGSKVVLRWKPPHQG 1204



 Score = 37.7 bits (86), Expect(2) = 4e-17
 Identities = 40/138 (28%), Positives = 61/138 (44%), Gaps = 7/138 (5%)
 Frame = +2

Query: 563  GWRKLNTYGSFLNNGV-AGAGGVLRNCDGGFIFGFTQPLLFSDVLMDECWAVWLGMQVII 739
            G+ KLNT G++  +   AG GGV R+  G +  GF + +        E  A+  G+QV  
Sbjct: 1204 GFLKLNTDGAWKADWENAGIGGVFRDAVGNWELGFAKRVDAGSPEAAELMAIREGLQVAW 1263

Query: 740  LLGMHKVIMEVDSKVLWTFLTIVDDTSISIKIKGMISDISHMVQVCHPICLRWTF----- 904
                HK+ +E D+K +   L             G+I     ++ +C  +   W+      
Sbjct: 1264 DCNYHKLEVECDAKGVVQLL--AKPLEAENHPLGVI-----VMDICILLTRHWSVEFLHI 1316

Query: 905  -REGNIMADELAKWATNQ 955
             REGN +A  LA  A NQ
Sbjct: 1317 KREGNKVAHCLAAEAVNQ 1334


>gb|ABD28505.2| RNA-directed DNA polymerase (Reverse transcriptase);
           Polynucleotidyl transferase, Ribonuclease H fold
           [Medicago truncatula]
          Length = 729

 Score = 53.5 bits (127), Expect(2) = 3e-12
 Identities = 28/77 (36%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
 Frame = +2

Query: 560 WGWRKLNTYGSFLNNG-VAGAGGVLRNCDGGFIFGFTQPLLFSDVLMDECWAVWLGMQVI 736
           +GW KLN  G++  +G +AG GG+LR+ DG +I G+ + +   D    E W ++LG+ + 
Sbjct: 633 FGWVKLNCDGAWKGSGTLAGCGGLLRDSDGRWIKGYFKKIGMCDAFHAEMWGMYLGLDMA 692

Query: 737 ILLGMHKVIMEVDSKVL 787
                  +I+E DSK+L
Sbjct: 693 WRENTTHLIVESDSKIL 709



 Score = 44.7 bits (104), Expect(2) = 3e-12
 Identities = 37/172 (21%), Positives = 66/172 (38%), Gaps = 6/172 (3%)
 Frame = +3

Query: 75  LWKMNVPMKRRFFIWQIATNVLPTAKFLLSRGCDVKHDCSLCEMGVDDGLHMFRDCSYAR 254
           LW    P + + FIW  A   + T       G  +   C  C    +  +H+ RDC ++ 
Sbjct: 467 LWNWKGPHRIQTFIWLAAHGRILTNYRRSKWGVGISPTCPCCAREDETVIHVLRDCVHST 526

Query: 255 AVWLV*SLKEVTRMDHGGGYDV--WFHGVLDSLRHKVSKICHVTVFVLGMWFIWVTRNSN 428
            VWL   L     + +   +D   W    L+      +     T F+   W++W  RN +
Sbjct: 527 QVWL--RLIPHNYITNFFSFDCREWVFNNLNKKGIGDNPATWQTTFMTTCWYLWNWRNKS 584

Query: 429 RFTGSLSHPGSAANLVWNMYGDMDWSARHVEVS----KPLSIAWIPPDGGGV 572
            F      P +   ++     +++ + + V  S    + + I W+ P  G V
Sbjct: 585 IFEIGFQRPSNPTLVIQKFTREIEDNTKLVHKSSHQKETIYIGWMRPPFGWV 636


>gb|ABE65462.1| hypothetical protein At2g27870 [Arabidopsis thaliana]
          Length = 314

 Score = 62.4 bits (150), Expect(2) = 3e-11
 Identities = 44/136 (32%), Positives = 70/136 (51%), Gaps = 8/136 (5%)
 Frame = +2

Query: 563 GWRKLNTYGSFLNN-GVAGAGGVLRNCDGGFIFGFTQPLLFSDVLMDECWAVWLGMQVII 739
           GW KLNT G+   N G+A AGGVLR+ +G +  GF   +      + E W V+ G+ +  
Sbjct: 152 GWWKLNTDGASRGNPGLASAGGVLRDEEGAWRGGFALNIGVCSAPLAELWGVYYGLYIAW 211

Query: 740 LLGMHKVIMEVDSKVLWTFLTIVDDTSISIKIKGMISDISHMVQVCHPICLR-W------ 898
              + ++ +EVDS+++  FL I  +          +  +S +V++CH    R W      
Sbjct: 212 ERRVTRLEIEVDSEIVVGFLKIXINE---------VHPLSFLVRLCHDFISRDWRVRISH 262

Query: 899 TFREGNIMADELAKWA 946
            +RE N +AD LA +A
Sbjct: 263 VYREANRLADGLANYA 278



 Score = 32.7 bits (73), Expect(2) = 3e-11
 Identities = 33/144 (22%), Positives = 54/144 (37%), Gaps = 18/144 (12%)
 Frame = +3

Query: 189 CSLCEMGVDDGLHMFRDCSYARAVWLV*SLKEVTRMDHGGGYDVWFHGVLDSL------R 350
           C +C+      +H+ RDC     +W       +  +  G   + +   +L+ L      R
Sbjct: 22  CQICKGAEKTIIHILRDCPAMEGIW-------IRLVPAGKRREFFTQSLLEWLFANLGDR 74

Query: 351 HKVSKICHVTVFVLGMWFIWVTRNSN------------RFTGSLSHPGSAANLVWNMYGD 494
            K  +    T+F L +W+ W  R  N            RF   L+   S A+++      
Sbjct: 75  RKTCESTWSTLFALSIWWAWKWRCGNIFGVQDKCRDRVRFLKDLARETSMAHVIVRTL-- 132

Query: 495 MDWSARHVEVSKPLSIAWIPPDGG 566
              S  H E  + L IAW  P+ G
Sbjct: 133 ---SGGHGERVERL-IAWSKPEEG 152


>gb|ABK28199.1| unknown [Arabidopsis thaliana]
          Length = 315

 Score = 61.6 bits (148), Expect(2) = 5e-11
 Identities = 44/136 (32%), Positives = 70/136 (51%), Gaps = 8/136 (5%)
 Frame = +2

Query: 563 GWRKLNTYGSFLNN-GVAGAGGVLRNCDGGFIFGFTQPLLFSDVLMDECWAVWLGMQVII 739
           GW KLNT G+   N G+A AGGVLR+ +G +  GF   +      + E W V+ G+ +  
Sbjct: 152 GWWKLNTDGASRGNPGLASAGGVLRDEEGAWRGGFALNIGVCSAPLAELWGVYYGLYIAW 211

Query: 740 LLGMHKVIMEVDSKVLWTFLTIVDDTSISIKIKGMISDISHMVQVCHPICLR-W------ 898
              + ++ +EVDS+++  FL I  +          +  +S +V++CH    R W      
Sbjct: 212 ERRVTRLEIEVDSEIVVGFLKIGINE---------VHPLSFLVRLCHDFISRDWRVRISH 262

Query: 899 TFREGNIMADELAKWA 946
            +RE N +AD LA +A
Sbjct: 263 VYREANRLADGLANYA 278



 Score = 32.7 bits (73), Expect(2) = 5e-11
 Identities = 33/144 (22%), Positives = 54/144 (37%), Gaps = 18/144 (12%)
 Frame = +3

Query: 189 CSLCEMGVDDGLHMFRDCSYARAVWLV*SLKEVTRMDHGGGYDVWFHGVLDSL------R 350
           C +C+      +H+ RDC     +W       +  +  G   + +   +L+ L      R
Sbjct: 22  CQICKGAEKTIIHILRDCXAMEGIW-------IRLVPAGKRREFFTQSLLEWLFANLGDR 74

Query: 351 HKVSKICHVTVFVLGMWFIWVTRNSN------------RFTGSLSHPGSAANLVWNMYGD 494
            K  +    T+F L +W+ W  R  N            RF   L+   S A+++      
Sbjct: 75  RKTCESTWSTLFALSIWWAWKWRCGNIFGVQDKCRDRVRFLKDLARETSMAHVIVRTL-- 132

Query: 495 MDWSARHVEVSKPLSIAWIPPDGG 566
              S  H E  + L IAW  P+ G
Sbjct: 133 ---SGGHGERVERL-IAWSKPEEG 152


>gb|AAD21515.1| putative reverse transcriptase [Arabidopsis thaliana]
           gi|20197456|gb|AAM15081.1| putative reverse
           transcriptase [Arabidopsis thaliana]
          Length = 314

 Score = 61.6 bits (148), Expect(2) = 5e-11
 Identities = 44/136 (32%), Positives = 70/136 (51%), Gaps = 8/136 (5%)
 Frame = +2

Query: 563 GWRKLNTYGSFLNN-GVAGAGGVLRNCDGGFIFGFTQPLLFSDVLMDECWAVWLGMQVII 739
           GW KLNT G+   N G+A AGGVLR+ +G +  GF   +      + E W V+ G+ +  
Sbjct: 152 GWWKLNTDGASRGNPGLASAGGVLRDEEGAWRGGFALNIGVCSAPLAELWGVYYGLYIAW 211

Query: 740 LLGMHKVIMEVDSKVLWTFLTIVDDTSISIKIKGMISDISHMVQVCHPICLR-W------ 898
              + ++ +EVDS+++  FL I  +          +  +S +V++CH    R W      
Sbjct: 212 ERRVTRLEIEVDSEIVVGFLKIGINE---------VHPLSFLVRLCHDFISRDWRVRISH 262

Query: 899 TFREGNIMADELAKWA 946
            +RE N +AD LA +A
Sbjct: 263 VYREANRLADGLANYA 278



 Score = 32.7 bits (73), Expect(2) = 5e-11
 Identities = 33/144 (22%), Positives = 54/144 (37%), Gaps = 18/144 (12%)
 Frame = +3

Query: 189 CSLCEMGVDDGLHMFRDCSYARAVWLV*SLKEVTRMDHGGGYDVWFHGVLDSL------R 350
           C +C+      +H+ RDC     +W       +  +  G   + +   +L+ L      R
Sbjct: 22  CQICKGAEKTIIHILRDCPAMEGIW-------IRLVPAGKRREFFTQSLLEWLFANLGDR 74

Query: 351 HKVSKICHVTVFVLGMWFIWVTRNSN------------RFTGSLSHPGSAANLVWNMYGD 494
            K  +    T+F L +W+ W  R  N            RF   L+   S A+++      
Sbjct: 75  RKTCESTWSTLFALSIWWAWKWRCGNIFGVQDKCRDRVRFLKDLARETSMAHVIVRTL-- 132

Query: 495 MDWSARHVEVSKPLSIAWIPPDGG 566
              S  H E  + L IAW  P+ G
Sbjct: 133 ---SGGHGERVERL-IAWSKPEEG 152