BLASTX nr result
ID: Cimicifuga21_contig00006563
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cimicifuga21_contig00006563
(1062 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ADE80751.1| cold shock domain protein 1 [Eutrema salsugineum] 144 4e-32
ref|XP_003547928.1| PREDICTED: DNA-binding protein HEXBP-like [G... 139 9e-31
ref|XP_002867041.1| hypothetical protein ARALYDRAFT_491032 [Arab... 138 2e-30
ref|XP_002886133.1| hypothetical protein ARALYDRAFT_480687 [Arab... 138 3e-30
gb|ADE80750.1| cold shock domain protein 3 [Eutrema salsugineum] 137 3e-30
>gb|ADE80751.1| cold shock domain protein 1 [Eutrema salsugineum]
Length = 263
Score = 144 bits (363), Expect = 4e-32
Identities = 81/195 (41%), Positives = 105/195 (53%), Gaps = 36/195 (18%)
Frame = -2
Query: 1058 ADRLTGIVKWFDNFRGYGFITPDDGGEDVFVHQSSIKSKGHRSLDEGEAVGFKIETGDDG 879
A R TG V WF++ +GYGFITPDD GE++FVHQS+I S+G RSL G++V F + G DG
Sbjct: 8 AGRSTGKVNWFNDSKGYGFITPDDDGEELFVHQSAILSEGFRSLTVGDSVEFAVTQGTDG 67
Query: 878 RKKAIDV-----SPL-------AGETASDTSECYKCGEVGHIARNCSSSE--------CY 759
+ KA++V +PL G A CY CGEVGH+A++CSSS+ CY
Sbjct: 68 KTKAVNVTAPGGAPLHRKEISSRGNGARRGGSCYHCGEVGHMAKDCSSSDRGDRSSGGCY 127
Query: 758 KCGETGHFAWNC----------------SSFKCYKCGEKGHFARGCSYTEWNSDGSDYDG 627
CG+TGHFA +C + +CY CG GHFAR C + G D
Sbjct: 128 TCGDTGHFARDCVQKSSGNGGSGGERGGAGGECYNCGNTGHFARDCVQKSVGNVG-DRGS 186
Query: 626 SETSESNNCGETGQL 582
NCG G +
Sbjct: 187 GGGGVCYNCGGAGHM 201
Score = 100 bits (250), Expect = 5e-19
Identities = 53/125 (42%), Positives = 77/125 (61%), Gaps = 9/125 (7%)
Frame = -2
Query: 542 ADRLTGIVKWFDSQKGYGFITLDNGGEDLFVHKSSIKSKGYRSLVEGEAVEFKIETGDCG 363
A R TG V WF+ KGYGFIT D+ GE+LFVH+S+I S+G+RSL G++VEF + G G
Sbjct: 8 AGRSTGKVNWFNDSKGYGFITPDDDGEELFVHQSAILSEGFRSLTVGDSVEFAVTQGTDG 67
Query: 362 RKKAIDVSSPGGSFV-------QGATSDTSACCYIYGGTGHFARNCSYT--GNSSGENDY 210
+ KA++V++PGG+ + +G + CY G GH A++CS + G+ S Y
Sbjct: 68 KTKAVNVTAPGGAPLHRKEISSRGNGARRGGSCYHCGEVGHMAKDCSSSDRGDRSSGGCY 127
Query: 209 NSSET 195
+T
Sbjct: 128 TCGDT 132
Score = 62.8 bits (151), Expect = 1e-07
Identities = 29/70 (41%), Positives = 36/70 (51%), Gaps = 19/70 (27%)
Frame = -2
Query: 818 CYKCGEVGHIARNCSSSE----CYKCGETGHFAWNCS---------------SFKCYKCG 696
CY CG GH+AR+C + CY+CG TGH A +C C+KCG
Sbjct: 192 CYNCGGAGHMARDCPTKRQPGACYECGGTGHMARDCDRRGSGGGRGNAGGGGGGNCFKCG 251
Query: 695 EKGHFARGCS 666
+ GHFAR CS
Sbjct: 252 QGGHFARECS 261
Score = 57.0 bits (136), Expect = 8e-06
Identities = 25/39 (64%), Positives = 30/39 (76%)
Frame = -2
Query: 119 ADRLTGTVKWFDSQKGYGFITPDSRGEDLFVHKSSIKSK 3
A R TG V WF+ KGYGFITPD GE+LFVH+S+I S+
Sbjct: 8 AGRSTGKVNWFNDSKGYGFITPDDDGEELFVHQSAILSE 46
>ref|XP_003547928.1| PREDICTED: DNA-binding protein HEXBP-like [Glycine max]
Length = 250
Score = 139 bits (351), Expect = 9e-31
Identities = 77/206 (37%), Positives = 105/206 (50%), Gaps = 48/206 (23%)
Frame = -2
Query: 1055 DRLTGIVKWFDNFRGYGFITPDDGGEDVFVHQSSIKSKGHRSLDEGEAVGFKIETGDDGR 876
+R TG+V+WF+N +G+GFI PDDGGED+FVHQSSI+S G+R+L EG+ V F I TGD+ +
Sbjct: 4 ERFTGVVQWFNNGKGFGFIKPDDGGEDLFVHQSSIRSDGYRTLLEGDRVEFAIATGDNDK 63
Query: 875 KKAIDVSPLAG----------------------ETASDTSECYKCGEVGHIARNCSSSE- 765
KA+DV+ + G + CY+CG+ GH+AR+C+ S
Sbjct: 64 TKAVDVTGVDGAPLQPRASAANNRAGGSGFGARRNGGSGAACYQCGDFGHLARDCNRSSN 123
Query: 764 -----------CYKCGETGHFAWNC--------------SSFKCYKCGEKGHFARGCSYT 660
C+ CG GH A +C S C++CG GH AR C+
Sbjct: 124 TGGGGGGSGGGCFNCGGFGHLARDCVRGGGGNVGVGGGGGSGSCFRCGGFGHMARDCATG 183
Query: 659 EWNSDGSDYDGSETSESNNCGETGQL 582
+ N G GS CGE G L
Sbjct: 184 KGNIGG----GSSGGGCFRCGEVGHL 205
Score = 109 bits (272), Expect = 1e-21
Identities = 55/123 (44%), Positives = 77/123 (62%), Gaps = 17/123 (13%)
Frame = -2
Query: 539 DRLTGIVKWFDSQKGYGFITLDNGGEDLFVHKSSIKSKGYRSLVEGEAVEFKIETGDCGR 360
+R TG+V+WF++ KG+GFI D+GGEDLFVH+SSI+S GYR+L+EG+ VEF I TGD +
Sbjct: 4 ERFTGVVQWFNNGKGFGFIKPDDGGEDLFVHQSSIRSDGYRTLLEGDRVEFAIATGDNDK 63
Query: 359 KKAIDVSSPGGSFVQGATS-----------------DTSACCYIYGGTGHFARNCSYTGN 231
KA+DV+ G+ +Q S + A CY G GH AR+C+ + N
Sbjct: 64 TKAVDVTGVDGAPLQPRASAANNRAGGSGFGARRNGGSGAACYQCGDFGHLARDCNRSSN 123
Query: 230 SSG 222
+ G
Sbjct: 124 TGG 126
Score = 57.8 bits (138), Expect = 5e-06
Identities = 24/37 (64%), Positives = 31/37 (83%)
Frame = -2
Query: 116 DRLTGTVKWFDSQKGYGFITPDSRGEDLFVHKSSIKS 6
+R TG V+WF++ KG+GFI PD GEDLFVH+SSI+S
Sbjct: 4 ERFTGVVQWFNNGKGFGFIKPDDGGEDLFVHQSSIRS 40
>ref|XP_002867041.1| hypothetical protein ARALYDRAFT_491032 [Arabidopsis lyrata subsp.
lyrata] gi|297312877|gb|EFH43300.1| hypothetical protein
ARALYDRAFT_491032 [Arabidopsis lyrata subsp. lyrata]
Length = 257
Score = 138 bits (348), Expect = 2e-30
Identities = 79/206 (38%), Positives = 102/206 (49%), Gaps = 36/206 (17%)
Frame = -2
Query: 1058 ADRLTGIVKWFDNFRGYGFITPDDGGEDVFVHQSSIKSKGHRSLDEGEAVGFKIETGDDG 879
A R TG V WF++ +GYGFITPDD E++FVHQSSI S+G+RSL EG++V F I G DG
Sbjct: 8 AVRSTGKVNWFNDSKGYGFITPDDRSEELFVHQSSIVSEGYRSLAEGDSVEFAITQGSDG 67
Query: 878 RKKAIDVSPLAGETASDT-------------SECYKCGEVGHIARNCSSSE-------CY 759
+ KA++V+ L G S CY CGE+GHI E CY
Sbjct: 68 KTKAVEVTALGGGALKKENNSRGNGARRGGGSGCYNCGELGHIGGGSGGGERGSRREGCY 127
Query: 758 KCGETGHFAWNCSSFK----------------CYKCGEKGHFARGCSYTEWNSDGSDYDG 627
CG+ GHFA +C+ CY CG+ GHFAR C + + GS G
Sbjct: 128 NCGDAGHFARDCTQKSVGNGDQRGAAGAGKDGCYNCGDIGHFARDCGNQKVTA-GSVRSG 186
Query: 626 SETSESNNCGETGQLGLRDMLLVQPT 549
+ CG G + QP+
Sbjct: 187 GGSGSCYTCGGVGHIARECATKRQPS 212
Score = 94.7 bits (234), Expect = 3e-17
Identities = 65/182 (35%), Positives = 87/182 (47%), Gaps = 35/182 (19%)
Frame = -2
Query: 542 ADRLTGIVKWFDSQKGYGFITLDNGGEDLFVHKSSIKSKGYRSLVEGEAVEFKIETGDCG 363
A R TG V WF+ KGYGFIT D+ E+LFVH+SSI S+GYRSL EG++VEF I G G
Sbjct: 8 AVRSTGKVNWFNDSKGYGFITPDDRSEELFVHQSSIVSEGYRSLAEGDSVEFAITQGSDG 67
Query: 362 RKKAIDVSSPGGSFV------------QGATSDTSAC---------------------CY 282
+ KA++V++ GG + +G S C CY
Sbjct: 68 KTKAVEVTALGGGALKKENNSRGNGARRGGGSGCYNCGELGHIGGGSGGGERGSRREGCY 127
Query: 281 IYGGTGHFARNCSYTGNSSGENDYNSSETSERHNFTVTGQLG--LRDSTLDQLTVQADRL 108
G GHFAR+C T S G D + + + G +G RD ++T + R
Sbjct: 128 NCGDAGHFARDC--TQKSVGNGDQRGAAGAGKDGCYNCGDIGHFARDCGNQKVTAGSVRS 185
Query: 107 TG 102
G
Sbjct: 186 GG 187
Score = 68.9 bits (167), Expect = 2e-09
Identities = 36/88 (40%), Positives = 46/88 (52%), Gaps = 14/88 (15%)
Frame = -2
Query: 887 DDGRKKAIDVSPLAGETASDTSECYKCGEVGHIARNCSSSE-----CYKCGETGHFAWNC 723
D G +K S +G + CY CG VGHIAR C++ CY+CG +GH A +C
Sbjct: 172 DCGNQKVTAGSVRSG---GGSGSCYTCGGVGHIARECATKRQPSRGCYQCGGSGHLARDC 228
Query: 722 SSF---------KCYKCGEKGHFARGCS 666
KCY CG++GHFAR CS
Sbjct: 229 DQRASGGNGGGNKCYSCGKEGHFARECS 256
Score = 64.7 bits (156), Expect = 4e-08
Identities = 34/118 (28%), Positives = 50/118 (42%), Gaps = 19/118 (16%)
Frame = -2
Query: 884 DGRKKAIDVSPLAGETASDTSECYKCGEVGHIARNCS--------------SSECYKCGE 747
D +K++ G + CY CG++GH AR+C S CY CG
Sbjct: 138 DCTQKSVGNGDQRGAAGAGKDGCYNCGDIGHFARDCGNQKVTAGSVRSGGGSGSCYTCGG 197
Query: 746 TGHFAWNCSSFK-----CYKCGEKGHFARGCSYTEWNSDGSDYDGSETSESNNCGETG 588
GH A C++ + CY+CG GH AR C +G ++ +CG+ G
Sbjct: 198 VGHIARECATKRQPSRGCYQCGGSGHLARDCDQRASGGNGGG------NKCYSCGKEG 249
Score = 57.8 bits (138), Expect = 5e-06
Identities = 26/39 (66%), Positives = 30/39 (76%)
Frame = -2
Query: 119 ADRLTGTVKWFDSQKGYGFITPDSRGEDLFVHKSSIKSK 3
A R TG V WF+ KGYGFITPD R E+LFVH+SSI S+
Sbjct: 8 AVRSTGKVNWFNDSKGYGFITPDDRSEELFVHQSSIVSE 46
>ref|XP_002886133.1| hypothetical protein ARALYDRAFT_480687 [Arabidopsis lyrata subsp.
lyrata] gi|297331973|gb|EFH62392.1| hypothetical protein
ARALYDRAFT_480687 [Arabidopsis lyrata subsp. lyrata]
Length = 299
Score = 138 bits (347), Expect = 3e-30
Identities = 109/323 (33%), Positives = 140/323 (43%), Gaps = 51/323 (15%)
Frame = -2
Query: 1058 ADRLTGIVKWFDNFRGYGFITPDDGGEDVFVHQSSIKSKGHRSLDEGEAVGFKIETGDDG 879
A R G V WF + +GYGFITPDDGGE++FVHQSSI S G+RSL GE+V + I G DG
Sbjct: 6 AARYIGKVNWFGDGKGYGFITPDDGGEELFVHQSSIVSDGYRSLTVGESVEYSITLGSDG 65
Query: 878 RKKAIDVSPLAG--------ETASDTSECYKCGEVGHIARNC------------------ 777
+ KA++V+ G + + C+ CGEVGH+A++C
Sbjct: 66 KTKAVNVTAPGGGSLNKKENSSRGNGGSCFNCGEVGHMAKDCDGGGGGRSYGGGGGRRSG 125
Query: 776 SSSECYKCGETGHFAWNC------------SSFKCYKCGEKGHFARGCSYTEWNSDGSDY 633
CY CG+ GHFA +C CY CGE GH A+ C S G+ Y
Sbjct: 126 GEGTCYVCGDVGHFARDCRQSGGGNSGGGGGGGPCYSCGEVGHLAKDC---RGGSGGNRY 182
Query: 632 -DGSETSESNNCGETGQLG--LRDMLLVQPTTQADRLTGIVKWFDSQKGYGFITLDNGGE 462
G S S+ C G +G RD Q G G + GG
Sbjct: 183 GGGGRGSGSDGCYLCGGVGHFARDC--------------------RQNGGGNVGGGGGGG 222
Query: 461 DLFVHKSSIKSKGYRSLV------EGEAVEFKIETG----DCGRKKAIDVSSPGGSFVQG 312
+ + G+ + V G A ETG DC R+ + SS GG G
Sbjct: 223 NTCYTCGGV---GHIARVCTSKRPSGGACYECGETGHLARDCDRRGS--GSSGGG----G 273
Query: 311 ATSDTSACCYIYGGTGHFARNCS 243
S C+ G GHFAR CS
Sbjct: 274 GGGGGSGKCFNCGKEGHFARECS 296
Score = 101 bits (251), Expect = 4e-19
Identities = 53/132 (40%), Positives = 72/132 (54%), Gaps = 3/132 (2%)
Frame = -2
Query: 542 ADRLTGIVKWFDSQKGYGFITLDNGGEDLFVHKSSIKSKGYRSLVEGEAVEFKIETGDCG 363
A R G V WF KGYGFIT D+GGE+LFVH+SSI S GYRSL GE+VE+ I G G
Sbjct: 6 AARYIGKVNWFGDGKGYGFITPDDGGEELFVHQSSIVSDGYRSLTVGESVEYSITLGSDG 65
Query: 362 RKKAIDVSSPGGSFV---QGATSDTSACCYIYGGTGHFARNCSYTGNSSGENDYNSSETS 192
+ KA++V++PGG + + ++ C+ G GH A++C G +
Sbjct: 66 KTKAVNVTAPGGGSLNKKENSSRGNGGSCFNCGEVGHMAKDCDGGGGGRSYGGGGGRRSG 125
Query: 191 ERHNFTVTGQLG 156
V G +G
Sbjct: 126 GEGTCYVCGDVG 137
>gb|ADE80750.1| cold shock domain protein 3 [Eutrema salsugineum]
Length = 295
Score = 137 bits (346), Expect = 3e-30
Identities = 98/287 (34%), Positives = 127/287 (44%), Gaps = 8/287 (2%)
Frame = -2
Query: 1058 ADRLTGIVKWFDNFRGYGFITPDDGGEDVFVHQSSIKSKGHRSLDEGEAVGFKIETGDDG 879
A R TG V WF + +GYGFITPDDGG+++FVHQSSI S G RSL GE+V + I G DG
Sbjct: 8 AARSTGKVNWFSDGKGYGFITPDDGGDELFVHQSSIVSDGFRSLTVGESVEYAITLGSDG 67
Query: 878 RKKAIDVSPLAG--------ETASDTSECYKCGEVGHIARNCSSSECYKCGETGHFAWNC 723
+ KA++V+ G + + C+ CGE+GH+A++C + + G G +
Sbjct: 68 KTKAVEVTAPGGGSLKNKEISSRGNGGGCFNCGEIGHMAKDCVGGKSF--GGGGRRSGGE 125
Query: 722 SSFKCYKCGEKGHFARGCSYTEWNSDGSDYDGSETSESNNCGETGQLGLRDMLLVQPTTQ 543
S CY CG GHFAR C N+ G+ G NCGE G +
Sbjct: 126 GS--CYNCGNVGHFARDC---RQNAGGNSVGGGGGGACYNCGEVGHMAK----------- 169
Query: 542 ADRLTGIVKWFDSQKGYGFITLDNGGEDLFVHKSSIKSKGYRSLVEGEAVEFKIETGDCG 363
D + G G GG S G + G+ F DC
Sbjct: 170 -----------DCRGGSGGNRYGGGGRG---------SGGEGCYMCGDVGHF---ARDCR 206
Query: 362 RKKAIDVSSPGGSFVQGATSDTSACCYIYGGTGHFARNCSYTGNSSG 222
+ DV GG G T CY GG GH AR C+ S G
Sbjct: 207 QNVGGDVGGGGGG---GNT------CYTCGGFGHMARVCTSKRPSGG 244
Score = 100 bits (248), Expect = 8e-19
Identities = 49/109 (44%), Positives = 69/109 (63%), Gaps = 3/109 (2%)
Frame = -2
Query: 563 LVQPTTQADRLTGIVKWFDSQKGYGFITLDNGGEDLFVHKSSIKSKGYRSLVEGEAVEFK 384
+ Q A R TG V WF KGYGFIT D+GG++LFVH+SSI S G+RSL GE+VE+
Sbjct: 1 MAQEDQSAARSTGKVNWFSDGKGYGFITPDDGGDELFVHQSSIVSDGFRSLTVGESVEYA 60
Query: 383 IETGDCGRKKAIDVSSPGGSFVQG---ATSDTSACCYIYGGTGHFARNC 246
I G G+ KA++V++PGG ++ ++ C+ G GH A++C
Sbjct: 61 ITLGSDGKTKAVEVTAPGGGSLKNKEISSRGNGGGCFNCGEIGHMAKDC 109
Score = 62.4 bits (150), Expect = 2e-07
Identities = 30/70 (42%), Positives = 37/70 (52%), Gaps = 19/70 (27%)
Frame = -2
Query: 818 CYKCGEVGHIARNCSSSE----------CYKCGETGHFAWNCS---------SFKCYKCG 696
CY CG GH+AR C+S CY+CG GH A +C S KC+ CG
Sbjct: 223 CYTCGGFGHMARVCTSKRPSGGGGGVGACYECGGIGHLARDCDRRGSGGGSGSSKCFTCG 282
Query: 695 EKGHFARGCS 666
++GHFAR CS
Sbjct: 283 KEGHFARECS 292
Score = 60.1 bits (144), Expect = 9e-07
Identities = 38/109 (34%), Positives = 48/109 (44%), Gaps = 23/109 (21%)
Frame = -2
Query: 845 GETASDTSECYKCGEVGHIARNC-------------SSSECYKCGETGHFAWNCSSFK-- 711
G S CY CG+VGH AR+C + CY CG GH A C+S +
Sbjct: 183 GGRGSGGEGCYMCGDVGHFARDCRQNVGGDVGGGGGGGNTCYTCGGFGHMARVCTSKRPS 242
Query: 710 --------CYKCGEKGHFARGCSYTEWNSDGSDYDGSETSESNNCGETG 588
CY+CG GH AR C + GS GS +S+ CG+ G
Sbjct: 243 GGGGGVGACYECGGIGHLARDC-----DRRGSG-GGSGSSKCFTCGKEG 285