BLASTX nr result

ID: Cimicifuga21_contig00006551 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00006551
         (679 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002277674.1| PREDICTED: uncharacterized protein LOC100245...    77   4e-12
emb|CAN72780.1| hypothetical protein VITISV_024624 [Vitis vinifera]    75   9e-12
ref|XP_002326532.1| predicted protein [Populus trichocarpa] gi|2...    71   2e-10
ref|XP_002527653.1| conserved hypothetical protein [Ricinus comm...    69   1e-09

>ref|XP_002277674.1| PREDICTED: uncharacterized protein LOC100245547 [Vitis vinifera]
          Length = 283

 Score = 76.6 bits (187), Expect = 4e-12
 Identities = 52/109 (47%), Positives = 61/109 (55%), Gaps = 7/109 (6%)
 Frame = -1

Query: 634 MKAVLIRNGSGSVQSSPIHGSPKVSLAVHDSVTGILFAGK---NVTRCSLHLETNDXXXX 464
           MKAVL+R GS  VQSS   GSP+VS   HDSVT +    K   N  R SLH + N     
Sbjct: 1   MKAVLLRTGSVPVQSSLFPGSPRVSFGFHDSVTRVFSRDKTSLNSPRFSLHFQNNSQGEV 60

Query: 463 XKECSTSIRRTMSEADVIRSVNKFS----CRSRSFPARIVEEEENPCDD 329
               +  IRR MSE+D+IRS +  S      S SFPARI EEEE   D+
Sbjct: 61  P---ARRIRRAMSESDIIRSESGISKLNGVGSHSFPARIPEEEEEEDDN 106


>emb|CAN72780.1| hypothetical protein VITISV_024624 [Vitis vinifera]
          Length = 414

 Score = 75.5 bits (184), Expect = 9e-12
 Identities = 51/106 (48%), Positives = 61/106 (57%), Gaps = 7/106 (6%)
 Frame = -1

Query: 640 STMKAVLIRNGSGSVQSSPIHGSPKVSLAVHDSVTGILFAGK---NVTRCSLHLETNDXX 470
           +TMKAVL+R GS  VQSS    SP+VS  VHDSVT +    K   N  R SLH + N   
Sbjct: 182 TTMKAVLLRTGSVPVQSSLFPXSPRVSFGVHDSVTRVFSRDKTSLNSPRFSLHFQNNSQG 241

Query: 469 XXXKECSTSIRRTMSEADVIRSVNKFS----CRSRSFPARIVEEEE 344
                 +  IRR +SE+D+IRS +  S      S SFPARI EEEE
Sbjct: 242 EVP---ARRIRRALSESDIIRSGSGISKLNGVGSHSFPARIPEEEE 284


>ref|XP_002326532.1| predicted protein [Populus trichocarpa] gi|222833854|gb|EEE72331.1|
           predicted protein [Populus trichocarpa]
          Length = 276

 Score = 71.2 bits (173), Expect = 2e-10
 Identities = 57/135 (42%), Positives = 76/135 (56%), Gaps = 15/135 (11%)
 Frame = -1

Query: 634 MKAVLIRNGSGSVQSSPIHGSPKVSLAVHDSVTGILFAGKNVTRCSLHLETNDXXXXXKE 455
           MK+V +R GS  +QS+   GSPK+SL  +DS T I F+G +  R SLHL+ N       +
Sbjct: 1   MKSVPLRTGSFPIQSTVRPGSPKISLTRYDSPTNI-FSGVSSPRDSLHLDIN-----HHQ 54

Query: 454 CSTSIRRTMSEADVIRSVNKFS--------CRSRSFPARIVEEEE----NPCDDGSFIWG 311
               IRR +SE++VIRS  + S          SRSFP+ I E EE    +  DD + IW 
Sbjct: 55  TGAPIRRALSESNVIRSEREASRGLKKPSGAGSRSFPSMIPEVEEHVFGDRVDDYAGIWP 114

Query: 310 ESDV-LEE--FSGGG 275
           +S + LEE  FSG G
Sbjct: 115 KSGIPLEELGFSGDG 129


>ref|XP_002527653.1| conserved hypothetical protein [Ricinus communis]
           gi|223532958|gb|EEF34724.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 268

 Score = 68.6 bits (166), Expect = 1e-09
 Identities = 52/129 (40%), Positives = 73/129 (56%), Gaps = 9/129 (6%)
 Frame = -1

Query: 634 MKAVLIRNGSGSVQSSPIHGSPKVSLAVHDSVTGILFAGK---NVTRCSLHLETNDXXXX 464
           MK++L+R GS    +    GSPK+SL+  +S++ +L   K   N  + SLHLE N     
Sbjct: 1   MKSLLLRTGSIQAHAPVTCGSPKLSLSRRNSISSVLSGEKSTANSPKFSLHLEINSRKR- 59

Query: 463 XKECSTSIRRTMSEADVIRSVNK---FSCRSRSFPARIVEEEENPCDDGSFIWGESDV-L 296
                T IRR +SE D+IRS  +       S SFPARI+EEE +   + ++IW E+ + L
Sbjct: 60  ----DTLIRRALSETDIIRSETEEMLSRAGSMSFPARILEEEYS---NLTYIWPENGIPL 112

Query: 295 EE--FSGGG 275
           EE  FS GG
Sbjct: 113 EELGFSSGG 121


Top