BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00006495
         (1500 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004152457.1| PREDICTED: pentatricopeptide repeat-containi...   697   0.0  
ref|XP_002321560.1| predicted protein [Populus trichocarpa] gi|2...   686   0.0  
ref|XP_002511467.1| pentatricopeptide repeat-containing protein,...   668   0.0  
ref|XP_003540784.1| PREDICTED: pentatricopeptide repeat-containi...   640   0.0  
sp|Q9S7R4.1|PP125_ARATH RecName: Full=Pentatricopeptide repeat-c...   640   0.0  

>ref|XP_004152457.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
            mitochondrial-like [Cucumis sativus]
            gi|449487784|ref|XP_004157799.1| PREDICTED:
            pentatricopeptide repeat-containing protein At1g74900,
            mitochondrial-like [Cucumis sativus]
          Length = 502

 Score =  697 bits (1799), Expect = 0.0
 Identities = 337/451 (74%), Positives = 398/451 (88%), Gaps = 1/451 (0%)
 Frame = +3

Query: 126  IAELILKNTPETLTLTLDNHKFQWSPDLVDRVLKRLWNDGPKALHFFKHLDRHPTYKHSA 305
            IA L+L++ P++L  +L   + Q++P+LVD+VLKRLW  GPKAL FFKHL+ HP+Y HSA
Sbjct: 53   IATLVLESDPKSLRGSLHGLQLQFTPELVDKVLKRLWFHGPKALQFFKHLEYHPSYAHSA 112

Query: 306  SSYDHAIDISGRLRDYKTLWALVSRMRSRRIGPTPKTFAIIIERYVSAGKADRAVKVFLS 485
            SS+DHAIDI+GR+RDYKT+WALV+RMR+RRIGP+ KTFAII ER+V+AGK DRA+KVFLS
Sbjct: 113  SSFDHAIDIAGRMRDYKTVWALVARMRARRIGPSSKTFAIIAERFVAAGKPDRAIKVFLS 172

Query: 486  MHEHGCPQDLHSFNTLLDVLCKSKRVEMAYS-FFKVFRGRFKADAVSYNIIANGWCLIKR 662
            M EHGCPQDLHSFNT+LD+LCKSKRVEMAY+  FKV RG+FKAD VSYNIIANGWCLIKR
Sbjct: 173  MREHGCPQDLHSFNTILDILCKSKRVEMAYNNLFKVLRGKFKADVVSYNIIANGWCLIKR 232

Query: 663  TPRALEILKEMVERGIDPMLSTYNILLKGFFRAEQIQRAWEFFLQMKKRGCEIDVINYTT 842
            TP+ALE+LKEMVERG+ P ++TYNILLKG+FRA Q++ AWEFFLQMK+R  EIDV+ YTT
Sbjct: 233  TPKALEVLKEMVERGLTPTITTYNILLKGYFRAGQLKEAWEFFLQMKEREVEIDVVTYTT 292

Query: 843  VVHGFGVAGEIAKARKVFNEMIKEGCLPSVATYNAFIQVLCKKDNVENAVVVFEEMVRKG 1022
            +VHGFGV GEI +ARKVFNEM+ EG LPS ATYNA IQVLCKKD+VENAV++FEEMV+KG
Sbjct: 293  MVHGFGVVGEIKRARKVFNEMVGEGILPSTATYNAMIQVLCKKDSVENAVLMFEEMVKKG 352

Query: 1023 YVPNATTYAVLIRGLCHAGKMARAMELMGRMKEDECEPNVQTYNVVIRYLCEAGELEKAL 1202
            YVPN TTY V+IRGL HAG M +AME + RMK D CEPNVQTYNV IRY C+AG++EK L
Sbjct: 353  YVPNLTTYNVVIRGLFHAGNMDKAMEFIERMKTDGCEPNVQTYNVAIRYFCDAGDVEKGL 412

Query: 1203 ETFEKMCSGDCLPSLDTYNILISAMFVRKKADDMLVAGKLLVEMVDRGFMPRRFTFNRVL 1382
              FEKM  G  LP+LDTYN+LISAMFVRKK++D++VAGKLL+EMVDRGF+PR+FTFNRVL
Sbjct: 413  SMFEKMGQGS-LPNLDTYNVLISAMFVRKKSEDLVVAGKLLLEMVDRGFIPRKFTFNRVL 471

Query: 1383 NGLLLTGNQAFAKDILRAQSRCGRLPRQFKL 1475
            NGLLLTGNQAFAK+ILR QS+CGRLPRQFKL
Sbjct: 472  NGLLLTGNQAFAKEILRLQSKCGRLPRQFKL 502


>ref|XP_002321560.1| predicted protein [Populus trichocarpa] gi|222868556|gb|EEF05687.1|
            predicted protein [Populus trichocarpa]
          Length = 491

 Score =  686 bits (1770), Expect = 0.0
 Identities = 330/453 (72%), Positives = 388/453 (85%), Gaps = 1/453 (0%)
 Frame = +3

Query: 120  SVIAELILKNT-PETLTLTLDNHKFQWSPDLVDRVLKRLWNDGPKALHFFKHLDRHPTYK 296
            + +A LIL ++ P+ L  TL +   QW+P LV+ +LKRLWNDGPKAL FF  L  HP+Y 
Sbjct: 39   AALATLILTSSNPQALAQTLHSPTIQWTPQLVNTILKRLWNDGPKALQFFNLLSHHPSYS 98

Query: 297  HSASSYDHAIDISGRLRDYKTLWALVSRMRSRRIGPTPKTFAIIIERYVSAGKADRAVKV 476
            H  SSYDHAIDIS RLRD  +L +LV RMRS R+GPTPKTFAII ERY SAGK  RAVKV
Sbjct: 99   HHPSSYDHAIDISARLRDSPSLRSLVYRMRSARLGPTPKTFAIIAERYASAGKPHRAVKV 158

Query: 477  FLSMHEHGCPQDLHSFNTLLDVLCKSKRVEMAYSFFKVFRGRFKADAVSYNIIANGWCLI 656
            FLSMH+ GC QDL SFNT+LDVLCKSKRVEMAY+ FKVF+G+F+AD VSYN++ NGWCLI
Sbjct: 159  FLSMHQFGCFQDLQSFNTILDVLCKSKRVEMAYNLFKVFKGKFRADCVSYNVMVNGWCLI 218

Query: 657  KRTPRALEILKEMVERGIDPMLSTYNILLKGFFRAEQIQRAWEFFLQMKKRGCEIDVINY 836
            KRT +ALE+LKEMV+RG+ P L++YN +LKG+FRA QI  AW+FFL+MKKR CEIDVI Y
Sbjct: 219  KRTNKALEMLKEMVKRGLTPNLTSYNTMLKGYFRAGQINEAWDFFLEMKKRDCEIDVITY 278

Query: 837  TTVVHGFGVAGEIAKARKVFNEMIKEGCLPSVATYNAFIQVLCKKDNVENAVVVFEEMVR 1016
            TTV+HGFGVAGEI +ARKVF+ M+K+G LPSVATYNAFIQVLCKKDNV+NA+V+FEEMV 
Sbjct: 279  TTVIHGFGVAGEIKRARKVFDTMVKKGVLPSVATYNAFIQVLCKKDNVDNAIVIFEEMVV 338

Query: 1017 KGYVPNATTYAVLIRGLCHAGKMARAMELMGRMKEDECEPNVQTYNVVIRYLCEAGELEK 1196
            KGYVPN+ TY ++IRGLCH G+M RAME MGRMK+D CEPNVQTYN+VIRY C+ GE++K
Sbjct: 339  KGYVPNSITYNLVIRGLCHRGEMERAMEFMGRMKDDGCEPNVQTYNLVIRYFCDEGEIDK 398

Query: 1197 ALETFEKMCSGDCLPSLDTYNILISAMFVRKKADDMLVAGKLLVEMVDRGFMPRRFTFNR 1376
            AL+ F+KM SGDCLP+LDTYNILISAMFVRKK+DD+LVAG LL+EMVDRGF+PR+FTFNR
Sbjct: 399  ALDLFQKMTSGDCLPNLDTYNILISAMFVRKKSDDLLVAGNLLIEMVDRGFVPRKFTFNR 458

Query: 1377 VLNGLLLTGNQAFAKDILRAQSRCGRLPRQFKL 1475
            VLNGLLLTGNQ FAK+ILR QSRCGRL R+ KL
Sbjct: 459  VLNGLLLTGNQGFAKEILRLQSRCGRLTRKIKL 491


>ref|XP_002511467.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223550582|gb|EEF52069.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 482

 Score =  668 bits (1723), Expect = 0.0
 Identities = 314/453 (69%), Positives = 385/453 (84%), Gaps = 1/453 (0%)
 Frame = +3

Query: 120  SVIAELILKNT-PETLTLTLDNHKFQWSPDLVDRVLKRLWNDGPKALHFFKHLDRHPTYK 296
            + +A LIL +T  +TL  +L +   QW+P LV+ +LKRLWN GPKALHFFK L  HP+Y 
Sbjct: 30   TTLAALILNSTNSQTLAESLHSPSIQWTPQLVNTILKRLWNHGPKALHFFKILSHHPSYC 89

Query: 297  HSASSYDHAIDISGRLRDYKTLWALVSRMRSRRIGPTPKTFAIIIERYVSAGKADRAVKV 476
            H ASS+DHAIDI  RLRD++TLW LVSRMRS R+GP+P+TFAII ERY + GK  RAV V
Sbjct: 90   HQASSFDHAIDICARLRDFRTLWFLVSRMRSCRLGPSPRTFAIIAERYAAMGKPHRAVTV 149

Query: 477  FLSMHEHGCPQDLHSFNTLLDVLCKSKRVEMAYSFFKVFRGRFKADAVSYNIIANGWCLI 656
            F+SMHE+GC QDL SFNT+LDVLCKSKRVEMAY+ FK  +G+FKAD VSYNII NGWCLI
Sbjct: 150  FMSMHEYGCFQDLSSFNTILDVLCKSKRVEMAYNLFKALKGKFKADCVSYNIIVNGWCLI 209

Query: 657  KRTPRALEILKEMVERGIDPMLSTYNILLKGFFRAEQIQRAWEFFLQMKKRGCEIDVINY 836
            KRTP+ALE+LKEMVERG+ P L+TYNI+L G+FRA Q   AW FFL+MKKR C+IDV+ Y
Sbjct: 210  KRTPKALEMLKEMVERGLTPNLTTYNIMLNGYFRAGQTNEAWGFFLEMKKRKCDIDVVTY 269

Query: 837  TTVVHGFGVAGEIAKARKVFNEMIKEGCLPSVATYNAFIQVLCKKDNVENAVVVFEEMVR 1016
            T+V+HG GV GEI +AR VFN+M+K+G LPSVAT+NA IQ+LCKKD+VENA+++FEEMV+
Sbjct: 270  TSVIHGLGVVGEIKRARNVFNQMVKDGVLPSVATFNALIQILCKKDSVENAILIFEEMVK 329

Query: 1017 KGYVPNATTYAVLIRGLCHAGKMARAMELMGRMKEDECEPNVQTYNVVIRYLCEAGELEK 1196
            +GYVPN+ TY ++IRGLCH G+M RAMELM RM++D+CEPNVQTYN++IRY C+AGE+EK
Sbjct: 330  RGYVPNSITYNLVIRGLCHVGEMQRAMELMERMEDDDCEPNVQTYNILIRYFCDAGEIEK 389

Query: 1197 ALETFEKMCSGDCLPSLDTYNILISAMFVRKKADDMLVAGKLLVEMVDRGFMPRRFTFNR 1376
             L+ F+KM +GDCLP+LDTYNILI++MFVRK +D++LVAGKLLVEMVDRGF+PR+ TFNR
Sbjct: 390  GLDLFQKMGNGDCLPNLDTYNILINSMFVRKNSDNLLVAGKLLVEMVDRGFLPRKLTFNR 449

Query: 1377 VLNGLLLTGNQAFAKDILRAQSRCGRLPRQFKL 1475
            VL+GLLLTGNQ FAK+IL  Q  CGRLPR+FKL
Sbjct: 450  VLDGLLLTGNQDFAKEILSLQGGCGRLPRKFKL 482


>ref|XP_003540784.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
            mitochondrial-like [Glycine max]
          Length = 495

 Score =  640 bits (1651), Expect = 0.0
 Identities = 306/455 (67%), Positives = 375/455 (82%), Gaps = 2/455 (0%)
 Frame = +3

Query: 117  DSVIAELILKNTPETLTLTLDNHKFQWSPDLVDRVLKRLWNDGPKALHFFKHLDRH-PTY 293
            D+ IA+L+L++ P T++  L     QW+PDLV++V+KRLWN GPKAL FFKHLDRH P+Y
Sbjct: 41   DATIAKLVLESDPRTVSEALTKPTIQWTPDLVNKVMKRLWNHGPKALQFFKHLDRHHPSY 100

Query: 294  KHSASSYDHAIDISGRLRDYKTLWALVSRMRSRRIGPTPKTFAIIIERYVSAGKADRAVK 473
             HS SS+DHA+DI+ R+RD+ + WALV RMRS R+GP+PKT AI+ ERY S GK  RAV+
Sbjct: 101  THSPSSFDHAVDIAARMRDFNSAWALVGRMRSLRLGPSPKTLAILAERYASNGKPHRAVR 160

Query: 474  VFLSMHEHGCPQDLHSFNTLLDVLCKSKRVEMAYSFFKVFRGRFKADAVSYNIIANGWCL 653
             FLSM EHG  QDLHSFNTLLD+LCKSKRVE A+S  K    RF+ D V+YNI+ANG+CL
Sbjct: 161  TFLSMAEHGIRQDLHSFNTLLDILCKSKRVETAHSLLKTLTSRFRPDTVTYNILANGYCL 220

Query: 654  IKRTPRALEILKEMVERGIDPMLSTYNILLKGFFRAEQIQRAWEFFLQMKKRGCEIDVIN 833
            IKRTP AL +LKEMV+RGI+P + TYN +LKG+FR+ QI+ AWEF+L+MKKR CEIDV+ 
Sbjct: 221  IKRTPMALRVLKEMVQRGIEPTMVTYNTMLKGYFRSNQIKEAWEFYLEMKKRKCEIDVVT 280

Query: 834  YTTVVHGFGVAGEIAKARKVFNEMIKEGCLPSVATYNAFIQVLCKKDNVENAVVVFEEMV 1013
            YTTV+HGFGVAG++ KA++VF+EM+KEG +P+VATYNA IQVLCKKD+VENAVVVFEEM 
Sbjct: 281  YTTVIHGFGVAGDVKKAKRVFHEMVKEGVVPNVATYNALIQVLCKKDSVENAVVVFEEMA 340

Query: 1014 RKGY-VPNATTYAVLIRGLCHAGKMARAMELMGRMKEDECEPNVQTYNVVIRYLCEAGEL 1190
            R+G  VPN  TY V+IRGLCH G M RA+  M RM E      VQTYNVVIRY C+AGE+
Sbjct: 341  REGVCVPNVVTYNVVIRGLCHVGDMERALGFMERMGEHGLRACVQTYNVVIRYFCDAGEV 400

Query: 1191 EKALETFEKMCSGDCLPSLDTYNILISAMFVRKKADDMLVAGKLLVEMVDRGFMPRRFTF 1370
            EKALE F KM  G CLP+LDTYN+LISAMFVRKK++D++VAGKLL++MVDRGF+PR+FTF
Sbjct: 401  EKALEVFGKMGDGSCLPNLDTYNVLISAMFVRKKSEDLVVAGKLLMDMVDRGFLPRKFTF 460

Query: 1371 NRVLNGLLLTGNQAFAKDILRAQSRCGRLPRQFKL 1475
            NRVLNGL++TGNQ FAK+ILR QSRCGR+ R+ KL
Sbjct: 461  NRVLNGLVITGNQDFAKEILRMQSRCGRIVRRLKL 495


>sp|Q9S7R4.1|PP125_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g74900,
            mitochondrial; AltName: Full=Protein ORGANELLE TRANSCRIPT
            PROCESSING DEFECT 43; Flags: Precursor
            gi|5882733|gb|AAD55286.1|AC008263_17 Contains a PF|01535
            DUF17 domain [Arabidopsis thaliana]
            gi|12323885|gb|AAG51911.1|AC013258_5 hypothetical
            protein; 69434-67986 [Arabidopsis thaliana]
          Length = 482

 Score =  640 bits (1650), Expect = 0.0
 Identities = 320/457 (70%), Positives = 375/457 (82%), Gaps = 5/457 (1%)
 Frame = +3

Query: 120  SVIAELILKN---TPETLTLTLDNHKFQWSPDLVDRVLKRLWNDGPKALHFFKHLDRHPT 290
            + IA+LIL +   T +     L      W+P+LV+ VLKRLWN GPKAL FF  LD H  
Sbjct: 26   AAIAKLILSSPNTTHQDDQFLLSTKTTPWTPNLVNSVLKRLWNHGPKALQFFHFLDNHHR 85

Query: 291  -YKHSASSYDHAIDISGRLRDYKTLWALVSRMRSRRIGPTPKTFAIIIERYVSAGKADRA 467
             Y H ASS+D AIDI+ RL  + T+W+L+ RMRS RIGP+PKTFAI+ ERY SAGK D+A
Sbjct: 86   EYVHDASSFDLAIDIAARLHLHPTVWSLIHRMRSLRIGPSPKTFAIVAERYASAGKPDKA 145

Query: 468  VKVFLSMHEHGCPQDLHSFNTLLDVLCKSKRVEMAYSFFKVFRGRFKADAVSYNIIANGW 647
            VK+FL+MHEHGC QDL SFNT+LDVLCKSKRVE AY  F+  RGRF  D V+YN+I NGW
Sbjct: 146  VKLFLNMHEHGCFQDLASFNTILDVLCKSKRVEKAYELFRALRGRFSVDTVTYNVILNGW 205

Query: 648  CLIKRTPRALEILKEMVERGIDPMLSTYNILLKGFFRAEQIQRAWEFFLQMKKRGCEIDV 827
            CLIKRTP+ALE+LKEMVERGI+P L+TYN +LKGFFRA QI+ AWEFFL+MKKR CEIDV
Sbjct: 206  CLIKRTPKALEVLKEMVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDV 265

Query: 828  INYTTVVHGFGVAGEIAKARKVFNEMIKEGCLPSVATYNAFIQVLCKKDNVENAVVVFEE 1007
            + YTTVVHGFGVAGEI +AR VF+EMI+EG LPSVATYNA IQVLCKKDNVENAVV+FEE
Sbjct: 266  VTYTTVVHGFGVAGEIKRARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEE 325

Query: 1008 MVRKGYVPNATTYAVLIRGLCHAGKMARAMELMGRMKEDECEPNVQTYNVVIRYLCEAGE 1187
            MVR+GY PN TTY VLIRGL HAG+ +R  ELM RM+ + CEPN QTYN++IRY  E  E
Sbjct: 326  MVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSE 385

Query: 1188 LEKALETFEKMCSGDCLPSLDTYNILISAMFVRKKADDMLVAGKLLVEMVDRGFMPRRFT 1367
            +EKAL  FEKM SGDCLP+LDTYNILIS MFVRK+++DM+VAGKLL+EMV+RGF+PR+FT
Sbjct: 386  VEKALGLFEKMGSGDCLPNLDTYNILISGMFVRKRSEDMVVAGKLLLEMVERGFIPRKFT 445

Query: 1368 FNRVLNGLLLTGNQAFAKDILRAQSRCG-RLPRQFKL 1475
            FNRVLNGLLLTGNQAFAK+ILR QS+ G RL R+F+L
Sbjct: 446  FNRVLNGLLLTGNQAFAKEILRLQSKSGSRLLRKFRL 482