BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00006454
         (1334 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002274318.1| PREDICTED: pentatricopeptide repeat-containi...   369   e-99 
ref|XP_004140747.1| PREDICTED: pentatricopeptide repeat-containi...   365   2e-98
ref|NP_567622.1| pentatricopeptide repeat-containing protein [Ar...   336   9e-90
ref|XP_002867860.1| EMB1417 [Arabidopsis lyrata subsp. lyrata] g...   328   3e-87
ref|XP_002513638.1| pentatricopeptide repeat-containing protein,...   325   1e-86

>ref|XP_002274318.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21190
            [Vitis vinifera] gi|302143769|emb|CBI22630.3| unnamed
            protein product [Vitis vinifera]
          Length = 295

 Score =  369 bits (947), Expect = e-99
 Identities = 182/293 (62%), Positives = 226/293 (77%), Gaps = 1/293 (0%)
 Frame = -3

Query: 1119 MLSLKYSSIILSRRFDSVNISNKPSSVVVCAAKGPRPRYPRVWKSKKRVGTISKSKKLVD 940
            ML L+YS   ++RR D+V I   P S+VVC AKGPRPRYPRVWK+++R+GTISKS KLVD
Sbjct: 1    MLCLRYSPATITRRLDAVEIPKNPRSIVVCGAKGPRPRYPRVWKTRQRIGTISKSAKLVD 60

Query: 939  CIKGLSNVKEEVYGTLDAFIAWELEFPLITVXXXXXXXXXXXEWKRIIQVTKWMLNKGQG 760
            CIKGLSNVKEEVYG LD+FIAWELEFPLITV           EWKRIIQVTKWML+KGQG
Sbjct: 61   CIKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLEDQKEWKRIIQVTKWMLSKGQG 120

Query: 759  RTKGSYFMLLNALAQDGRLEEAEELWATIFSESLESMPRIFFDKMISIYYSRGMHDKMFE 580
            RT GSYF LLNALA+DGRL+EAEELW  +FSE+LES+PR+F+DKMISIYY R MH+KMFE
Sbjct: 121  RTMGSYFTLLNALAEDGRLDEAEELWTKLFSENLESLPRVFYDKMISIYYRRDMHEKMFE 180

Query: 579  IFADMEELGIRPSNAVVTMVGNVFKKLEMLDKFEKLESKYPPVTWEYRYFRGKRIKVPSK 400
            IFADMEELGIRP+ ++V MVG+VF+KL MLDK+EKL+ KYPP  WEYRY +GKR+++ +K
Sbjct: 181  IFADMEELGIRPNTSIVKMVGDVFQKLGMLDKYEKLQKKYPPPKWEYRYIKGKRVRIRAK 240

Query: 399  QPSRF-EVASSHTDGLAEEAKDLLSDSEKVDNTYSVEGADDANNHFDEFDEEV 244
                  +   + +D   E   ++   ++K +N  S E  D+A++  D+ DE +
Sbjct: 241  LTGESDDPGEAESDDPGEAVNEI---NDKTEN--SNEMHDEADSSVDDADEPI 288


>ref|XP_004140747.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21190-like
            [Cucumis sativus]
          Length = 331

 Score =  365 bits (936), Expect = 2e-98
 Identities = 183/299 (61%), Positives = 227/299 (75%), Gaps = 6/299 (2%)
 Frame = -3

Query: 1125 YRMLSLKYSSIILSRRFDSVNISNKPSSVVVCAAKGPRPRYPRVWKSKKRVGTISKSKKL 946
            YRML+L Y+  + S+R +SVN S  PSS VVCAAKGPRPRYPRVWK+KKR+GTISK+ KL
Sbjct: 17   YRMLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRVWKTKKRIGTISKAAKL 76

Query: 945  VDCIKGLSNVKEEVYGTLDAFIAWELEFPLITVXXXXXXXXXXXEWKRIIQVTKWMLNKG 766
            VDC+KGLSNVKEEVYG LD+FIAWELEFPLITV           EWKRIIQ+TKWML+KG
Sbjct: 77   VDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQREWKRIIQLTKWMLSKG 136

Query: 765  QGRTKGSYFMLLNALAQDGRLEEAEELWATIFSESLESMPRIFFDKMISIYYSRGMHDKM 586
            QGRT GSYF LLNALA+DGRL+EAEELW  +FS+ LES+PRIFF KMIS+YY + MHDK+
Sbjct: 137  QGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESIPRIFFHKMISLYYDQAMHDKL 196

Query: 585  FEIFADMEELGIRPSNAVVTMVGNVFKKLEMLDKFEKLESKYPPVTWEYRYFRGKRIKVP 406
            FE+FADMEELG++P+ A+VT VGNVF++L MLDK++KL  KYPP  WEYRY +GKR+K+ 
Sbjct: 197  FEVFADMEELGVQPNMAIVTKVGNVFQELGMLDKYKKLMKKYPPPKWEYRYIKGKRVKIR 256

Query: 405  SKQPSRFEVASSHTDGLAEEAK------DLLSDSEKVDNTYSVEGADDANNHFDEFDEE 247
            +K  S      +  +GL+E AK      + + ++E      S+E  +D +   DE  E+
Sbjct: 257  AKYLSE---NGNSNNGLSEHAKMEHSSTNSIDEAEITSEDSSLEDDEDMSEDPDEILED 312


>ref|NP_567622.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
            gi|75246109|sp|Q8LG95.1|PP332_ARATH RecName:
            Full=Pentatricopeptide repeat-containing protein
            At4g21190; AltName: Full=Protein EMBRYO DEFECTIVE 1417
            gi|21618230|gb|AAM67280.1| unknown [Arabidopsis thaliana]
            gi|51969238|dbj|BAD43311.1| putative protein [Arabidopsis
            thaliana] gi|51971351|dbj|BAD44340.1| putative protein
            [Arabidopsis thaliana] gi|51971365|dbj|BAD44347.1|
            putative protein [Arabidopsis thaliana]
            gi|332659017|gb|AEE84417.1| pentatricopeptide
            repeat-containing protein [Arabidopsis thaliana]
          Length = 307

 Score =  336 bits (861), Expect = 9e-90
 Identities = 171/294 (58%), Positives = 214/294 (72%), Gaps = 3/294 (1%)
 Frame = -3

Query: 1119 MLSLKYSS--IILSRRFDSVNI-SNKPSSVVVCAAKGPRPRYPRVWKSKKRVGTISKSKK 949
            MLSL+YS   ++L  R  S  + + KP++VVVCAA+GPRPR PRVWK++KR+GTISK+ K
Sbjct: 1    MLSLRYSLPYLLLQTRESSTKLFTKKPNNVVVCAARGPRPRSPRVWKTRKRIGTISKAAK 60

Query: 948  LVDCIKGLSNVKEEVYGTLDAFIAWELEFPLITVXXXXXXXXXXXEWKRIIQVTKWMLNK 769
            ++ CIKGLSNVKEEVYG LD+FIAWELEFPL+ V           EWK+IIQVTKWML+K
Sbjct: 61   MIACIKGLSNVKEEVYGALDSFIAWELEFPLVIVKKALVILEDEKEWKKIIQVTKWMLSK 120

Query: 768  GQGRTKGSYFMLLNALAQDGRLEEAEELWATIFSESLESMPRIFFDKMISIYYSRGMHDK 589
            GQGRT G+YF LLNALA+D RL+EAEELW  +F E LE  PR FF+KMISIYY R MH K
Sbjct: 121  GQGRTMGTYFSLLNALAEDNRLDEAEELWNKLFMEHLEGTPRKFFNKMISIYYKRDMHQK 180

Query: 588  MFEIFADMEELGIRPSNAVVTMVGNVFKKLEMLDKFEKLESKYPPVTWEYRYFRGKRIKV 409
            +FE+FADMEELG++P+ A+V+MVG VF KLEM DK+EKL  KYPP  WE+RY +G+R+KV
Sbjct: 181  LFEVFADMEELGVKPNVAIVSMVGKVFVKLEMKDKYEKLMKKYPPPQWEFRYIKGRRVKV 240

Query: 408  PSKQPSRFEVASSHTDGLAEEAKDLLSDSEKVDNTYSVEGADDANNHFDEFDEE 247
             +KQ           + L+E    L SD +K+DN    E  D  +   +E DE+
Sbjct: 241  KAKQ----------LNELSEGEGGLSSDEDKIDNEIESEEEDGEDLSEEEEDEK 284


>ref|XP_002867860.1| EMB1417 [Arabidopsis lyrata subsp. lyrata]
            gi|297313696|gb|EFH44119.1| EMB1417 [Arabidopsis lyrata
            subsp. lyrata]
          Length = 317

 Score =  328 bits (840), Expect = 3e-87
 Identities = 164/273 (60%), Positives = 205/273 (75%), Gaps = 3/273 (1%)
 Frame = -3

Query: 1119 MLSLKYSS--IILSRRFDSVNI-SNKPSSVVVCAAKGPRPRYPRVWKSKKRVGTISKSKK 949
            MLSL+YS   ++L  +  S  + S +P++VVVCAA+GPRPR PRVWK++KR+GTISK+ K
Sbjct: 1    MLSLRYSLPYLLLQTKESSTKLFSKRPNNVVVCAARGPRPRSPRVWKTRKRIGTISKAAK 60

Query: 948  LVDCIKGLSNVKEEVYGTLDAFIAWELEFPLITVXXXXXXXXXXXEWKRIIQVTKWMLNK 769
            ++ CIKGLSNVKEEVYG LD+FIAWELEFPL+ V           EWK+IIQVTKWML+K
Sbjct: 61   MIACIKGLSNVKEEVYGALDSFIAWELEFPLVIVKKALVILEDEKEWKKIIQVTKWMLSK 120

Query: 768  GQGRTKGSYFMLLNALAQDGRLEEAEELWATIFSESLESMPRIFFDKMISIYYSRGMHDK 589
            GQGRT G+YF LLNALA+D RL+EAEELW  +F E LE  PR FF+KMISIYY R MH K
Sbjct: 121  GQGRTMGTYFSLLNALAEDNRLDEAEELWNKLFMEHLEGTPRKFFNKMISIYYKRDMHQK 180

Query: 588  MFEIFADMEELGIRPSNAVVTMVGNVFKKLEMLDKFEKLESKYPPVTWEYRYFRGKRIKV 409
            +FE+FADMEELG++P+ A+V+MVG VF KLEM DK+EKL  KYPP  WE+RY +G+R+KV
Sbjct: 181  LFEVFADMEELGVKPNIAIVSMVGKVFVKLEMKDKYEKLMKKYPPPQWEFRYIKGRRVKV 240

Query: 408  PSKQPSRFEVASSHTDGLAEEAKDLLSDSEKVD 310
             +KQ           + L+E    L SD +K+D
Sbjct: 241  KAKQ----------LNELSEGEGGLSSDEDKID 263


>ref|XP_002513638.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223547546|gb|EEF49041.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 359

 Score =  325 bits (834), Expect = 1e-86
 Identities = 171/298 (57%), Positives = 213/298 (71%)
 Frame = -3

Query: 1140 QVPSFYRMLSLKYSSIILSRRFDSVNISNKPSSVVVCAAKGPRPRYPRVWKSKKRVGTIS 961
            ++ S+ +ML L+    ++S RF+ +  S   SSVV  A KG RPR PRVWK+K R+GTIS
Sbjct: 28   KILSWRQMLCLRPPLPLISTRFEVIKFSKSTSSVV-SALKGARPRAPRVWKTKPRIGTIS 86

Query: 960  KSKKLVDCIKGLSNVKEEVYGTLDAFIAWELEFPLITVXXXXXXXXXXXEWKRIIQVTKW 781
            KS KLV+CIKGLSNVKEEVYG LD+ IAWELEFPLI V           EWKRIIQV KW
Sbjct: 87   KSAKLVECIKGLSNVKEEVYGALDSLIAWELEFPLIAVKKALKTLENEQEWKRIIQVIKW 146

Query: 780  MLNKGQGRTKGSYFMLLNALAQDGRLEEAEELWATIFSESLESMPRIFFDKMISIYYSRG 601
            ML+KGQGRT G+YF LLNALA+D RL+EAEELW  +FS++LE  PR FFDKMISIYY R 
Sbjct: 147  MLSKGQGRTMGTYFTLLNALAEDERLDEAEELWTKLFSDNLEGTPRNFFDKMISIYYKRE 206

Query: 600  MHDKMFEIFADMEELGIRPSNAVVTMVGNVFKKLEMLDKFEKLESKYPPVTWEYRYFRGK 421
            MH+KMFEIFADMEELG+RPS ++V M+G+VF+KL MLDK+ KL+ KYPP  WEYRY +GK
Sbjct: 207  MHEKMFEIFADMEELGVRPSVSIVNMMGSVFQKLGMLDKYRKLKKKYPPPKWEYRYIKGK 266

Query: 420  RIKVPSKQPSRFEVASSHTDGLAEEAKDLLSDSEKVDNTYSVEGADDANNHFDEFDEE 247
            R+++ +KQ + F  A+   +  A E   + +   + DNT   E   +     +E DEE
Sbjct: 267  RVRLRAKQVNEFLGANESVNQNA-ETPYISNKLNEEDNTKLNEA--NVEEDLNELDEE 321