BLASTX nr result
ID: Cimicifuga21_contig00006339
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cimicifuga21_contig00006339
(2592 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003532665.1| PREDICTED: DNA polymerase eta-like [Glycine ... 734 0.0
emb|CBI27227.3| unnamed protein product [Vitis vinifera] 734 0.0
ref|XP_002275643.2| PREDICTED: DNA polymerase eta [Vitis vinifera] 727 0.0
ref|XP_002863547.1| hypothetical protein ARALYDRAFT_494508 [Arab... 682 0.0
ref|NP_568638.2| DNA polymerase eta subunit [Arabidopsis thalian... 673 0.0
>ref|XP_003532665.1| PREDICTED: DNA polymerase eta-like [Glycine max]
Length = 703
Score = 734 bits (1896), Expect = 0.0
Identities = 402/727 (55%), Positives = 501/727 (68%), Gaps = 21/727 (2%)
Frame = +3
Query: 78 MPIARPEPSDARVIAHIDMDCFYVQVEQRRQPALQGLPTAVVQYNAWKGGGLIAVGYEAR 257
MP+AR E D RVIAH+DMDCFYVQVEQR+QP L+GLP+AV+QYN++KGG LIAV YEAR
Sbjct: 1 MPVARRETCDGRVIAHVDMDCFYVQVEQRKQPNLRGLPSAVIQYNSYKGGALIAVSYEAR 60
Query: 258 KFGVNRSMRGDEAKKVCPEINLVQVPVSRGKADLNVYRNAGSEVVAILSHRGRCERASID 437
+ GV RSMRGDEAK+ CP+I LVQVPV+RGKADLN YRNAGSEVV++LS +GRCERASID
Sbjct: 61 RCGVKRSMRGDEAKEACPQIQLVQVPVARGKADLNSYRNAGSEVVSVLSQKGRCERASID 120
Query: 438 EVYLDLTDAAETMLSESPPEMLEAINDEALKSHVLGID-ENGKEEGEYVRDWICRSDANH 614
EVYLDLT AAETML E+P + ++ DE LKSHVLG++ ++G + + VR W+CRSDA++
Sbjct: 121 EVYLDLTHAAETMLMETPLDSMQDFEDEVLKSHVLGLEIKDGSDAKDEVRKWLCRSDASY 180
Query: 615 RDRLLACGAIIVGELRMQVLKETEFTCSAGIAHNKMLAKHASAMNKPAQQTVVPFSAVTD 794
+D+LLACGA+IV +LRM+VLKETEFTCSAGIAHNKMLAK ASAMNKPAQQTVVP S+V
Sbjct: 181 QDKLLACGALIVCDLRMKVLKETEFTCSAGIAHNKMLAKLASAMNKPAQQTVVPQSSVEG 240
Query: 795 LLASLPIXXXXXXXXXXXSSVQADLGVNTVGDLLQFSEENLQERYGINTGTWLWNAARGI 974
LLASLPI SS+Q+DLGVNTVGDLLQFSEE LQ+ YGINTGTWLWN ARGI
Sbjct: 241 LLASLPIKKMKHLGGKLGSSLQSDLGVNTVGDLLQFSEEKLQQWYGINTGTWLWNIARGI 300
Query: 975 NGDEVEGRLLPKSHGCGKTFPGPRALKTMTSVERWINDLSEELSERIQSDMDKNNRVAHT 1154
+G+EVEGRLLPKSHG GKTFPGP+ALKT+ SV+ W+N L EEL+ER+ SD+D+N R+A T
Sbjct: 301 SGEEVEGRLLPKSHGSGKTFPGPQALKTVDSVQHWLNQLCEELNERLHSDLDQNKRIAQT 360
Query: 1155 LTLHASVYKTNXXXXXXXXXXXXCPLRYGTMKIQEDALKLFNSGLRDFLGSYRVETYGNQ 1334
LTLHA YKT CPLRYGT KIQEDAL LF +GLRDFLG Y + +GN+
Sbjct: 361 LTLHARAYKTGDSDSHRKFPSKSCPLRYGTRKIQEDALILFQAGLRDFLGFYNCKAHGNE 420
Query: 1335 NNTWGVTALSLTASKILATP-GTCSILKYFHGRDPSCSSEEQICNEIIQETLPPSPSGTE 1511
NN WGVT+LS++ASK+++ P GT SI+KYF G PS S+ Q + +I E P SPSG+
Sbjct: 421 NNNWGVTSLSVSASKLVSIPSGTHSIVKYFGGSFPSSSTSNQSLDVVIDEAAPSSPSGSG 480
Query: 1512 SCSGGNMTELPNESSC---EETKTNCNKFNLDREGRRTDKCNSKGSSSILRFFHNPDPSC 1682
+CSG +PNE E+T +K LD++ DP C
Sbjct: 481 NCSG----LVPNEFELEYPEDTGMKDSKACLDQQ----------------------DPLC 514
Query: 1683 SSAEQACSGIIQDNIQFFPSDDKSLISNQTEEQE---------SGINS-ASHGPRRDEQK 1832
+ +A G+ +++ PS + I + ++ S I+S + G ++ K
Sbjct: 515 HLSCKA-DGLTEESSLVSPSGSEDRILHNEPHRDLPATDLRRVSNISSLKAVGKKKTAGK 573
Query: 1833 K--GTCSILRFFGTQSPSCSSSQQVGNEIVQDSGPLSISARAGSGCYQAEPQNGNQQGEI 2006
K G CSI+ FF S SS +Q +I G S + + S C Q E + E
Sbjct: 574 KLQGNCSIVHFFNNYHNSQSSLEQKNVKISSSLGSHS-ADNSHSTCIQVEMPAEHPHEEF 632
Query: 2007 RLQ----SLVRNEQGKQKWSFNVDEIDPAVIDELPVEIQNEVRGWLKPPKRANTAKRGSS 2174
S+ QG+Q WS+N++EIDP++I+ELP EIQ E + WL+P KR N AKRGSS
Sbjct: 633 DTNKSRCSVGNMPQGRQDWSYNINEIDPSIINELPPEIQQEFQIWLRPHKRPNVAKRGSS 692
Query: 2175 IAHYFLP 2195
I HYF P
Sbjct: 693 ITHYFSP 699
>emb|CBI27227.3| unnamed protein product [Vitis vinifera]
Length = 773
Score = 734 bits (1894), Expect = 0.0
Identities = 397/718 (55%), Positives = 492/718 (68%), Gaps = 21/718 (2%)
Frame = +3
Query: 78 MPIARPEPSDARVIAHIDMDCFYVQVEQRRQPALQGLPTAVVQYNAWKGGGLIAVGYEAR 257
MP+A+PE SDAR+IAHIDMDCFYVQVEQR+QP L+GLPTAVVQYN+WKGGGLIAV YEAR
Sbjct: 1 MPVAKPESSDARIIAHIDMDCFYVQVEQRKQPDLRGLPTAVVQYNSWKGGGLIAVSYEAR 60
Query: 258 KFGVNRSMRGDEAKKVCPEINLVQVPVSRGKADLNVYRNAGSEVVAILSHRGRCERASID 437
KFGV RSMRGDEAK+VCP+I LVQVPV+RGKADLNVYRNAGSEVV+IL+ +GRCERASID
Sbjct: 61 KFGVKRSMRGDEAKQVCPQIQLVQVPVARGKADLNVYRNAGSEVVSILARKGRCERASID 120
Query: 438 EVYLDLTDAAETMLSESPPEMLEAINDEALKSHVLGIDENGKEEGEYVRDWICRSDANHR 617
EVYLDLTDAAE ML+E PPE LEAI++EALKSHVLG++E G + E VR W+CRS A+HR
Sbjct: 121 EVYLDLTDAAEAMLAEMPPESLEAIDEEALKSHVLGLNEGGNDIKESVRVWLCRSQADHR 180
Query: 618 DRLLACGAIIVGELRMQVLKETEFTCSAGIAHNKMLAKHASAMNKPAQQTVVPFSAVTDL 797
D+LLACGA+IV ELRMQV +ETEFTCSAGIAHNKMLAK ASAMNKPAQQT+VP S V L
Sbjct: 181 DKLLACGALIVAELRMQVFRETEFTCSAGIAHNKMLAKLASAMNKPAQQTIVPLSCVRGL 240
Query: 798 LASLPIXXXXXXXXXXXSSVQADLGVNTVGDLLQFSEENLQERYGINTGTWLWNAARGIN 977
L SLPI SS+Q+DLGVNTVGDLLQFSEE LQE YGINTGTWLWN ARGI+
Sbjct: 241 LGSLPIKKMKQLGGKLGSSLQSDLGVNTVGDLLQFSEEKLQECYGINTGTWLWNIARGIS 300
Query: 978 GDEVEGRLLPKSHGCGKTFPGPRALKTMTSVERWINDLSEELSERIQSDMDKNNRVAHTL 1157
G+EVE RLL KSHG GKTFPGP+ALKT+ SVE W+N+L EEL ER++SD+++N R+AHTL
Sbjct: 301 GEEVESRLLSKSHGSGKTFPGPKALKTIASVENWLNELCEELDERLRSDLEQNKRIAHTL 360
Query: 1158 TLHASVYKTNXXXXXXXXXXXXCPLRYGTMKIQEDALKLFNSGLRDFLGSYRVETYGNQN 1337
TLHA YK+N CPLRYG KIQEDAL LF +GLR++LGS +V+T NQ
Sbjct: 361 TLHARAYKSNDSDSHKKFPSKSCPLRYGIAKIQEDALNLFQAGLREYLGSCKVKTRANQC 420
Query: 1338 NTWGVTALSLTASKILATP-GTCSILKYFHGRDPSCSSEEQICNEIIQETLPPSPSGTES 1514
+ W +TALS++ASKI+A P GTCSI+KYFHG+D S SS +Q + +E S SG+ES
Sbjct: 421 SGWSITALSVSASKIVAIPTGTCSIMKYFHGQDLSSSSLKQPQDRSTEEAASLSHSGSES 480
Query: 1515 CSGGNMTELPNESSCEETKTNCNKFNLDREGRRTDKCNSKGSSSILRFFHNPDPSCSSAE 1694
G N E + EET+ N + NLD++ ++ +G+ SILRFF +P+ S +E
Sbjct: 481 YLGLNPRETQKQFPGEETRINYDMPNLDQQEKKRKMWEDQGTPSILRFFKRHNPTSSLSE 540
Query: 1695 QACSGIIQD-----NIQFFPSDDKSLISNQTE--------EQESGINSASHGPRRDEQKK 1835
Q IQD + + + + + Q + E ES S +R++ K
Sbjct: 541 QEQVEPIQDTKVSSSSGLWTTSESCSETGQIQLPKEMMVAETESNARRDSSAAKRNDGYK 600
Query: 1836 GTCSILRFFGTQSPSCSSSQQVGNEIVQDSGPLSISARAGSGCYQAEPQNGNQQGEIRLQ 2015
CS ++ EI ++ + AR+ Q + E
Sbjct: 601 ----------IDDIDCSVMDELPPEIQEE-----VQARSSEDLNQVQLPKEMMVAETESN 645
Query: 2016 SLVRNEQGKQKWSFNVDEIDPAVIDELPVEIQNEVRGW-------LKPPKRANTAKRG 2168
+ + K+ + +D+ID +V+DEL EIQ EV+ W ++ PK A+ G
Sbjct: 646 ARRDSSAAKRNDGYKIDDIDCSVMDELSPEIQEEVQAWSSEELNQVQLPKETMAAETG 703
Score = 108 bits (270), Expect = 7e-21
Identities = 99/335 (29%), Positives = 147/335 (43%), Gaps = 19/335 (5%)
Frame = +3
Query: 1257 EDALKLFNSGLRDFLGSYRVET---YGNQNNTWGVTALSLTAS----KILATPGTCSILK 1415
E+A L +SG +LG ET + + +L K+ GT SIL+
Sbjct: 468 EEAASLSHSGSESYLGLNPRETQKQFPGEETRINYDMPNLDQQEKKRKMWEDQGTPSILR 527
Query: 1416 YFHGRDPSCSSEEQICNEIIQETLPPSPSG----TESCSGGNMTELPNESSCEETKTNCN 1583
+F +P+ S EQ E IQ+T S SG +ESCS +LP E ET++N
Sbjct: 528 FFKRHNPTSSLSEQEQVEPIQDTKVSSSSGLWTTSESCSETGQIQLPKEMMVAETESNA- 586
Query: 1584 KFNLDREGRRTDKCNSKGSSSILRFFHNPDPSCSSAEQACSGIIQDNIQFFPSDDKSLIS 1763
R D +K + + D CS ++ I Q+ +Q S+D + +
Sbjct: 587 ---------RRDSSAAKRNDG----YKIDDIDCSVMDELPPEI-QEEVQARSSEDLNQVQ 632
Query: 1764 NQTE----EQESGINSASHGPRRDEQKKGTCSILRFFGTQSPSCSSSQQVGNEIVQDSGP 1931
E E ES S +R++ K CS ++ EI ++
Sbjct: 633 LPKEMMVAETESNARRDSSAAKRNDGYK----------IDDIDCSVMDELSPEIQEE--- 679
Query: 1932 LSISARAGSGCYQAEPQNGNQQGEI----RLQSLVRNEQGKQKWSFNVDEIDPAVIDELP 2099
+ A + Q + E R SL + ++ WS+ +DEIDP+V+DELP
Sbjct: 680 --VQAWSSEELNQVQLPKETMAAETGPNDRRCSLGGGAERRETWSYKIDEIDPSVMDELP 737
Query: 2100 VEIQNEVRGWLKPPKRANTAKRGSSIAHYFLPARD 2204
EI+ EV+ WL+P K A T KRGSSIAHYF P ++
Sbjct: 738 PEIRAEVQAWLRPQKPAKTGKRGSSIAHYFSPMKN 772
>ref|XP_002275643.2| PREDICTED: DNA polymerase eta [Vitis vinifera]
Length = 779
Score = 727 bits (1877), Expect = 0.0
Identities = 397/724 (54%), Positives = 492/724 (67%), Gaps = 27/724 (3%)
Frame = +3
Query: 78 MPIARPEPSDARVIAHIDMDCFYVQVEQRRQPALQGLPTAVVQYNAWKGGGLIAVGYEAR 257
MP+A+PE SDAR+IAHIDMDCFYVQVEQR+QP L+GLPTAVVQYN+WKGGGLIAV YEAR
Sbjct: 1 MPVAKPESSDARIIAHIDMDCFYVQVEQRKQPDLRGLPTAVVQYNSWKGGGLIAVSYEAR 60
Query: 258 KFGVNRSMRGDEAKKVCPEINLVQVPVSRGKADLNVYRNAGSEVVAILSHRGRCERASID 437
KFGV RSMRGDEAK+VCP+I LVQVPV+RGKADLNVYRNAGSEVV+IL+ +GRCERASID
Sbjct: 61 KFGVKRSMRGDEAKQVCPQIQLVQVPVARGKADLNVYRNAGSEVVSILARKGRCERASID 120
Query: 438 EVYLDLTDAAETMLSESPPEMLEAINDEALKSHVLGIDENGKEEGEYVRDWICRSDANHR 617
EVYLDLTDAAE ML+E PPE LEAI++EALKSHVLG++E G + E VR W+CRS A+HR
Sbjct: 121 EVYLDLTDAAEAMLAEMPPESLEAIDEEALKSHVLGLNEGGNDIKESVRVWLCRSQADHR 180
Query: 618 DRLLACGAIIVGELRMQVLKETEFTCSAGIAHNKMLAKHASAMNKPAQQTVVPFSAVTDL 797
D+LLACGA+IV ELRMQV +ETEFTCSAGIAHNKMLAK ASAMNKPAQQT+VP S V L
Sbjct: 181 DKLLACGALIVAELRMQVFRETEFTCSAGIAHNKMLAKLASAMNKPAQQTIVPLSCVRGL 240
Query: 798 LASLPIXXXXXXXXXXXSSVQADLGVNTVGDLLQFSEENLQERYGINTGTWLWNAARGIN 977
L SLPI SS+Q+DLGVNTVGDLLQFSEE LQE YGINTGTWLWN ARGI+
Sbjct: 241 LGSLPIKKMKQLGGKLGSSLQSDLGVNTVGDLLQFSEEKLQECYGINTGTWLWNIARGIS 300
Query: 978 GDEVEGRLLPKSHGCGKTFPGPRALKTMTSVERWINDLSEELSERIQSDMDKNNRVAHTL 1157
G+EVE RLL KSHG GKTFPGP+ALKT+ SVE W+N+L EEL ER++SD+++N R+AHTL
Sbjct: 301 GEEVESRLLSKSHGSGKTFPGPKALKTIASVENWLNELCEELDERLRSDLEQNKRIAHTL 360
Query: 1158 TLHASVYKTNXXXXXXXXXXXXCPLRYGTMKIQEDALKLFNSGLRDFLGSYRVETYGNQN 1337
TLHA YK+N CPLRYG KIQEDAL LF +GLR++LGS +V+T NQ
Sbjct: 361 TLHARAYKSNDSDSHKKFPSKSCPLRYGIAKIQEDALNLFQAGLREYLGSCKVKTRANQC 420
Query: 1338 NTWGVTALSLTASKILATP-GTCSILKYFHGRDPSCSSEEQICNEIIQETLPPSP----- 1499
+ W +TALS++ASKI+A P GTCSI+KYFHG+D S SS +Q + +E S
Sbjct: 421 SGWSITALSVSASKIVAIPTGTCSIMKYFHGQDLSSSSLKQPQDRSTEEAASLSHSDWGV 480
Query: 1500 -SGTESCSGGNMTELPNESSCEETKTNCNKFNLDREGRRTDKCNSKGSSSILRFFHNPDP 1676
SG+ES G N E + EET+ N + NLD++ ++ +G+ SILRFF +P
Sbjct: 481 YSGSESYLGLNPRETQKQFPGEETRINYDMPNLDQQEKKRKMWEDQGTPSILRFFKRHNP 540
Query: 1677 SCSSAEQACSGIIQD-----NIQFFPSDDKSLISNQTE--------EQESGINSASHGPR 1817
+ S +EQ IQD + + + + + Q + E ES S +
Sbjct: 541 TSSLSEQEQVEPIQDTKVSSSSGLWTTSESCSETGQIQLPKEMMVAETESNARRDSSAAK 600
Query: 1818 RDEQKKGTCSILRFFGTQSPSCSSSQQVGNEIVQDSGPLSISARAGSGCYQAEPQNGNQQ 1997
R++ K CS ++ EI ++ + AR+ Q +
Sbjct: 601 RNDGYK----------IDDIDCSVMDELPPEIQEE-----VQARSSEDLNQVQLPKEMMV 645
Query: 1998 GEIRLQSLVRNEQGKQKWSFNVDEIDPAVIDELPVEIQNEVRGW-------LKPPKRANT 2156
E + + K+ + +D+ID +V+DEL EIQ EV+ W ++ PK
Sbjct: 646 AETESNARRDSSAAKRNDGYKIDDIDCSVMDELSPEIQEEVQAWSSEELNQVQLPKETMA 705
Query: 2157 AKRG 2168
A+ G
Sbjct: 706 AETG 709
Score = 107 bits (268), Expect = 1e-20
Identities = 89/288 (30%), Positives = 131/288 (45%), Gaps = 12/288 (4%)
Frame = +3
Query: 1377 KILATPGTCSILKYFHGRDPSCSSEEQICNEIIQETLPPSPSG----TESCSGGNMTELP 1544
K+ GT SIL++F +P+ S EQ E IQ+T S SG +ESCS +LP
Sbjct: 521 KMWEDQGTPSILRFFKRHNPTSSLSEQEQVEPIQDTKVSSSSGLWTTSESCSETGQIQLP 580
Query: 1545 NESSCEETKTNCNKFNLDREGRRTDKCNSKGSSSILRFFHNPDPSCSSAEQACSGIIQDN 1724
E ET++N R D +K + + D CS ++ I Q+
Sbjct: 581 KEMMVAETESNA----------RRDSSAAKRNDG----YKIDDIDCSVMDELPPEI-QEE 625
Query: 1725 IQFFPSDDKSLISNQTE----EQESGINSASHGPRRDEQKKGTCSILRFFGTQSPSCSSS 1892
+Q S+D + + E E ES S +R++ K CS
Sbjct: 626 VQARSSEDLNQVQLPKEMMVAETESNARRDSSAAKRNDGYK----------IDDIDCSVM 675
Query: 1893 QQVGNEIVQDSGPLSISARAGSGCYQAEPQNGNQQGEI----RLQSLVRNEQGKQKWSFN 2060
++ EI ++ + A + Q + E R SL + ++ WS+
Sbjct: 676 DELSPEIQEE-----VQAWSSEELNQVQLPKETMAAETGPNDRRCSLGGGAERRETWSYK 730
Query: 2061 VDEIDPAVIDELPVEIQNEVRGWLKPPKRANTAKRGSSIAHYFLPARD 2204
+DEIDP+V+DELP EI+ EV+ WL+P K A T KRGSSIAHYF P ++
Sbjct: 731 IDEIDPSVMDELPPEIRAEVQAWLRPQKPAKTGKRGSSIAHYFSPMKN 778
>ref|XP_002863547.1| hypothetical protein ARALYDRAFT_494508 [Arabidopsis lyrata subsp.
lyrata] gi|297309382|gb|EFH39806.1| hypothetical protein
ARALYDRAFT_494508 [Arabidopsis lyrata subsp. lyrata]
Length = 672
Score = 682 bits (1759), Expect = 0.0
Identities = 371/716 (51%), Positives = 474/716 (66%), Gaps = 10/716 (1%)
Frame = +3
Query: 78 MPIARPEPSDARVIAHIDMDCFYVQVEQRRQPALQGLPTAVVQYNAWKGGGLIAVGYEAR 257
MP+AR E SDARVIAH+DMDCFYVQVEQR+QP L+GLPTAVVQYN W+GGGLIAV YEAR
Sbjct: 1 MPVARAETSDARVIAHVDMDCFYVQVEQRKQPELRGLPTAVVQYNEWQGGGLIAVSYEAR 60
Query: 258 KFGVNRSMRGDEAKKVCPEINLVQVPVSRGKADLNVYRNAGSEVVAILSHRGRCERASID 437
K GV RSMRGDEAK VCP+I LVQVPV+RGKADLN+YR AGSEVV+IL+ G+CERASID
Sbjct: 61 KCGVKRSMRGDEAKAVCPQIQLVQVPVARGKADLNLYRGAGSEVVSILAKSGKCERASID 120
Query: 438 EVYLDLTDAAETMLSESPPEMLEAINDEALKSHVLGID-ENGKEEGEYVRDWICRSDANH 614
EVYLDLTDAAE+ML+++PPE LE I++E LKSH+LG+ E+G + E VRDWICR DA+
Sbjct: 121 EVYLDLTDAAESMLADAPPESLELIDEEVLKSHILGMSREDGDDFKENVRDWICRKDADR 180
Query: 615 RDRLLACGAIIVGELRMQVLKETEFTCSAGIAHNKMLAKHASAMNKPAQQTVVPFSAVTD 794
R++LL+CG IIV ELR QVLKETEFTCSAGIAHNKMLAK AS MNKPAQQTVVP+SAV +
Sbjct: 181 REKLLSCGIIIVAELRKQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTVVPYSAVQE 240
Query: 795 LLASLPIXXXXXXXXXXXSSVQADLGVNTVGDLLQFSEENLQERYGINTGTWLWNAARGI 974
LL+SLPI +S+Q DLG++TVGDLLQ+SE LQE YGINTGTWLWN ARGI
Sbjct: 241 LLSSLPIKKMKQLGGKLGTSLQTDLGIDTVGDLLQYSETKLQEHYGINTGTWLWNIARGI 300
Query: 975 NGDEVEGRLLPKSHGCGKTFPGPRALKTMTSVERWINDLSEELSERIQSDMDKNNRVAHT 1154
+G+EV+GRLLPKSHG GKTFPGPRALK++++V+ W+N LSEELSER+ SD+++N R+A T
Sbjct: 301 SGEEVQGRLLPKSHGSGKTFPGPRALKSLSTVQHWLNQLSEELSERLSSDLEQNKRIAST 360
Query: 1155 LTLHASVYKTNXXXXXXXXXXXXCPLRYGTMKIQEDALKLFNSGLRDFLGSYRVETYGNQ 1334
LTLHAS +K+ CPLRYG KIQEDA LF + R+++G + + GN+
Sbjct: 361 LTLHASAFKSRDSNSHKKFPSKSCPLRYGVTKIQEDAFNLFQAAFREYMGPFGSKPRGNK 420
Query: 1335 NNTWGVTALSLTASKILATP-GTCSILKYFHGRDPSCSSEEQICNEIIQETLPPSPSGTE 1511
TW +T LS++ASKI+ P GT SI++YF S C +Q+ + +PS +E
Sbjct: 421 QETWRITGLSISASKIVDIPSGTSSIMRYFQSESTVPSRSVDGC---VQDHVTITPSASE 477
Query: 1512 SCSGGNMTELPNESSCEETKTNCNKFNLDREGRRTDKCNSKGSSSILRFFHNPDPSCSSA 1691
CS TE EET G + L F NPD
Sbjct: 478 GCSEQRSTETQAAMPEEET----------------------GVTYTLHNFENPD------ 509
Query: 1692 EQACSGIIQDNIQFFPSDDKSLISNQTEEQESGINSASHGPRRDEQKK---GTCSILRFF 1862
+ + + ++ PS++ + +S Q+E + G + G + + K+ G SI+ F
Sbjct: 510 -KGIDPVSEKDVVSCPSNEATDVSTQSESNK-GTQTKRIGRKMNNSKEKNWGMPSIVDIF 567
Query: 1863 GTQSPSCSSSQQVGNEIVQDSGPLSISARAGSGCYQAEPQNGNQQGEIRLQSLVRNEQGK 2042
+ + S Q+ Q+ +S +++ + NQ+ E E+ +
Sbjct: 568 KNYNATPPSKQET-----QEDSTVSSTSKKAKFSNSSHNSQVNQEVE---------ERRE 613
Query: 2043 QKWSFNVDEIDPAVIDELPVEIQNEVRGWLKPPKRANTAK-----RGSSIAHYFLP 2195
+ W + DEID +V DELPVEIQ E+R +L+P K+ N K SSIAHYF P
Sbjct: 614 KDWGYKTDEIDQSVFDELPVEIQRELRSFLRPNKQFNAGKSKGDGSTSSIAHYFPP 669
>ref|NP_568638.2| DNA polymerase eta subunit [Arabidopsis thaliana]
gi|23954185|emb|CAC94893.1| putative DNA polymerase eta
[Arabidopsis thaliana] gi|332007772|gb|AED95155.1| DNA
polymerase eta subunit [Arabidopsis thaliana]
Length = 672
Score = 673 bits (1737), Expect = 0.0
Identities = 371/716 (51%), Positives = 476/716 (66%), Gaps = 10/716 (1%)
Frame = +3
Query: 78 MPIARPEPSDARVIAHIDMDCFYVQVEQRRQPALQGLPTAVVQYNAWKGGGLIAVGYEAR 257
MP+ARPE SDARVIAH+DMDCFYVQVEQR+QP L+GLP+AVVQYN W+GGGLIAV YEAR
Sbjct: 1 MPVARPEASDARVIAHVDMDCFYVQVEQRKQPELRGLPSAVVQYNEWQGGGLIAVSYEAR 60
Query: 258 KFGVNRSMRGDEAKKVCPEINLVQVPVSRGKADLNVYRNAGSEVVAILSHRGRCERASID 437
K GV RSMRGDEAK CP+I LVQVPV+RGKADLN+YR+AGSEVV+IL+ G+CERASID
Sbjct: 61 KCGVKRSMRGDEAKAACPQIQLVQVPVARGKADLNLYRSAGSEVVSILAKSGKCERASID 120
Query: 438 EVYLDLTDAAETMLSESPPEMLEAINDEALKSHVLGID-ENGKEEGEYVRDWICRSDANH 614
EVYLDLTDAAE+ML+++PPE LE I++E LKSH+LG++ E+G + E VR+WICR DA+
Sbjct: 121 EVYLDLTDAAESMLADAPPESLELIDEEVLKSHILGMNREDGDDFKESVRNWICREDADR 180
Query: 615 RDRLLACGAIIVGELRMQVLKETEFTCSAGIAHNKMLAKHASAMNKPAQQTVVPFSAVTD 794
RD+LL+CG IIV ELR QVLKETEFTCSAGIAHNKMLAK AS MNKPAQQTVVP++AV +
Sbjct: 181 RDKLLSCGIIIVAELRKQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTVVPYAAVQE 240
Query: 795 LLASLPIXXXXXXXXXXXSSVQADLGVNTVGDLLQFSEENLQERYGINTGTWLWNAARGI 974
LL+SLPI +S+Q DLGV+TVGDLLQFSE LQE YG+NTGTWLWN ARGI
Sbjct: 241 LLSSLPIKKMKQLGGKLGTSLQTDLGVDTVGDLLQFSETKLQEHYGVNTGTWLWNIARGI 300
Query: 975 NGDEVEGRLLPKSHGCGKTFPGPRALKTMTSVERWINDLSEELSERIQSDMDKNNRVAHT 1154
+G+EV+GRLLPKSHG GKTFPGPRALK++++V+ W+N LSEELSER+ SD+++N R+A T
Sbjct: 301 SGEEVQGRLLPKSHGSGKTFPGPRALKSLSTVQHWLNQLSEELSERLGSDLEQNKRIAST 360
Query: 1155 LTLHASVYKTNXXXXXXXXXXXXCPLRYGTMKIQEDALKLFNSGLRDFLGSYRVETYGNQ 1334
LTLHAS +++ CP+RYG KIQEDA LF + LR+++GS+ ++ GN+
Sbjct: 361 LTLHASAFRSKDSDSHKKFPSKSCPMRYGVTKIQEDAFNLFQAALREYMGSFGIKPQGNK 420
Query: 1335 NNTWGVTALSLTASKILATP-GTCSILKYFHGRDPSCSSEEQICNEIIQETLPPSPSGTE 1511
TW +T LS++ASKI+ P GT SI++YF + S C +Q + + S +E
Sbjct: 421 LETWRITGLSVSASKIVDIPSGTSSIMRYFQSQPTVPSRSADGC---VQGNVAMTASASE 477
Query: 1512 SCSGGNMTELPNESSCEETKTNCNKFNLDREGRRTDKCNSKGSSSILRFFHNPDPSCSSA 1691
CS TE +++ E T G + L F N D
Sbjct: 478 GCSEQRSTE--TQAAMPEVDT--------------------GVTYTLPNFENQDKDIDL- 514
Query: 1692 EQACSGIIQDNIQFFPSDDKSLISNQTEEQESGINSASHGPRRD---EQKKGTCSILRFF 1862
+ + ++ PS++ + +S Q+E + G + G + + E+ +G SI+ F
Sbjct: 515 ------VSEKDVVSCPSNEATDVSTQSESNK-GTQTKKIGRKMNNSKEKNRGMPSIVDIF 567
Query: 1863 GTQSPSCSSSQQVGNEIVQDSGPLSISARAGSGCYQAEPQNGNQQGEIRLQSLVRNEQGK 2042
+ + S Q E +DS S S RA + N E+ E +
Sbjct: 568 KNYNATPPSKQ----ETQEDSTVSSASKRAK---LSSSSHNSQVNQEV-------EESRE 613
Query: 2043 QKWSFNVDEIDPAVIDELPVEIQNEVRGWLKPPKRANTAK-----RGSSIAHYFLP 2195
W + DEID +V DELPVEIQ E+R +L+ K+ NT K SSIAHYF P
Sbjct: 614 TDWGYKTDEIDQSVFDELPVEIQRELRSFLRTNKQFNTGKSKGDGSTSSIAHYFPP 669