BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00006338
         (1300 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002303732.1| predicted protein [Populus trichocarpa] gi|2...   340   4e-91
ref|XP_002299368.1| predicted protein [Populus trichocarpa] gi|2...   336   9e-90
ref|XP_002275396.1| PREDICTED: U2 small nuclear ribonucleoprotei...   328   1e-87
ref|XP_002512712.1| U2 small nuclear ribonucleoprotein A, putati...   326   7e-87
gb|ADG27843.1| U2 small nuclear ribonucleoprotein A [Gossypium h...   323   8e-86

>ref|XP_002303732.1| predicted protein [Populus trichocarpa] gi|222841164|gb|EEE78711.1|
           predicted protein [Populus trichocarpa]
          Length = 284

 Score =  340 bits (873), Expect = 4e-91
 Identities = 186/286 (65%), Positives = 202/286 (70%)
 Frame = +3

Query: 102 MVRLTADLIWKSPHFFNAVAERELDLRGNKIAVMENLGATEDQFDTIDLSDNEIVKLENF 281
           MVRLTADLIWKSPHFFNA+ ERELDLRGNKI V+ENLGATEDQFDTIDLSDNEIVKLEN 
Sbjct: 1   MVRLTADLIWKSPHFFNAIKERELDLRGNKIPVIENLGATEDQFDTIDLSDNEIVKLENM 60

Query: 282 PYLGRLGXXXXXXXXXXXXXXXXGEYLPKXXXXXXXXXXXXXXXEIDPLASLPKLRFLSL 461
           PYL RLG                GEYLPK               EIDPL+SLPKL+FLSL
Sbjct: 61  PYLNRLGTLIINNNRITRINPNIGEYLPKLHTLVLTNNRLVNLAEIDPLSSLPKLQFLSL 120

Query: 462 LDNNITKKPNYRLYVIYKLKSLRLLDFKKVKHKERIEAENLFXXXXXXXXXXXXXXXXFT 641
           LDN ITKKPNYRLYVI+KLKSLR+LDFKKVK KER EAE+LF                FT
Sbjct: 121 LDNTITKKPNYRLYVIHKLKSLRVLDFKKVKAKERAEAEHLFSSKEVEEEAKRESVKTFT 180

Query: 642 PAELQNVPEDPMEEQAPTVVAPTPEQIIAIKAAIVNSQTLEEVARLEKALKSGQLPADLK 821
           P E+ N+PE   E+QAP VVAPTPEQIIAIKAAIVNSQTLEEVARLEKAL SGQLPADLK
Sbjct: 181 PGEIPNIPEVAEEQQAPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKALNSGQLPADLK 240

Query: 822 IPDDDMATDITSKDDKMEVDVPKEATEQLEDAENQQKNEAPPAAVE 959
           I DD  +  +  +DDKM  D   EA  +  + E Q+ NEA P   E
Sbjct: 241 ILDDTGSNSVKEQDDKMATDSQNEA--EPNNLEEQKDNEATPMEQE 284


>ref|XP_002299368.1| predicted protein [Populus trichocarpa] gi|222846626|gb|EEE84173.1|
           predicted protein [Populus trichocarpa]
          Length = 284

 Score =  336 bits (861), Expect = 9e-90
 Identities = 185/286 (64%), Positives = 200/286 (69%)
 Frame = +3

Query: 102 MVRLTADLIWKSPHFFNAVAERELDLRGNKIAVMENLGATEDQFDTIDLSDNEIVKLENF 281
           MVRLTADL+WKSPHFFNA+ ERELDLRGNKI V+ENLGATEDQFDTIDLSDNEIVKLEN 
Sbjct: 1   MVRLTADLVWKSPHFFNAIKERELDLRGNKIPVIENLGATEDQFDTIDLSDNEIVKLENM 60

Query: 282 PYLGRLGXXXXXXXXXXXXXXXXGEYLPKXXXXXXXXXXXXXXXEIDPLASLPKLRFLSL 461
           PYL RLG                GEYLPK               EIDPLASLPKL FLSL
Sbjct: 61  PYLNRLGTLIINNNRITRINPNIGEYLPKLHTLVLINNRLVNLAEIDPLASLPKLHFLSL 120

Query: 462 LDNNITKKPNYRLYVIYKLKSLRLLDFKKVKHKERIEAENLFXXXXXXXXXXXXXXXXFT 641
           LDNNITKKPNYRLYVI+KLKSLR+LDFKKVK KER EAE+LF                FT
Sbjct: 121 LDNNITKKPNYRLYVIHKLKSLRVLDFKKVKGKERAEAEHLFASKEVEEEARRESVKTFT 180

Query: 642 PAELQNVPEDPMEEQAPTVVAPTPEQIIAIKAAIVNSQTLEEVARLEKALKSGQLPADLK 821
           P E+ NV E   E+QAP VVAPTP+QIIAIKAAIVNSQTLEEVARLEKAL SGQLPADLK
Sbjct: 181 PGEVPNVLEGAEEQQAPKVVAPTPDQIIAIKAAIVNSQTLEEVARLEKALNSGQLPADLK 240

Query: 822 IPDDDMATDITSKDDKMEVDVPKEATEQLEDAENQQKNEAPPAAVE 959
           I D   +  +  +DDKM  D   EA  +  + E Q+ NEA P   E
Sbjct: 241 ILDGTGSNSVKEQDDKMATDNQNEA--EPNNLEEQKDNEATPMEQE 284


>ref|XP_002275396.1| PREDICTED: U2 small nuclear ribonucleoprotein A' [Vitis vinifera]
           gi|296085571|emb|CBI29303.3| unnamed protein product
           [Vitis vinifera]
          Length = 287

 Score =  328 bits (842), Expect = 1e-87
 Identities = 176/287 (61%), Positives = 201/287 (70%), Gaps = 1/287 (0%)
 Frame = +3

Query: 102 MVRLTADLIWKSPHFFNAVAERELDLRGNKIAVMENLGATEDQFDTIDLSDNEIVKLENF 281
           MVRLTADLIWKSPHFFNA+ ERELDLRGNK+AV+ENLGATEDQFDTIDLSDNEIVKLEN 
Sbjct: 1   MVRLTADLIWKSPHFFNAIRERELDLRGNKVAVIENLGATEDQFDTIDLSDNEIVKLENL 60

Query: 282 PYLGRLGXXXXXXXXXXXXXXXXGEYLPKXXXXXXXXXXXXXXXEIDPLASLPKLRFLSL 461
           PYL RLG                GEYLPK               EIDPL+S PKL+FLSL
Sbjct: 61  PYLNRLGTLLINNNRITRINPNIGEYLPKLHTLVLTNNRLVNLAEIDPLSSFPKLQFLSL 120

Query: 462 LDNNITKKPNYRLYVIYKLKSLRLLDFKKVKHKERIEAENLFXXXXXXXXXXXXXXXXFT 641
           LDNNITKKPNYRLYVI++LKSLRLLDFKKVK+KER+EAENLF                FT
Sbjct: 121 LDNNITKKPNYRLYVIHRLKSLRLLDFKKVKNKERLEAENLFASKEVEEEAKQEPLKTFT 180

Query: 642 PAELQNVPEDPMEEQAPTVVAPTPEQIIAIKAAIVNSQTLEEVARLEKALKSGQLPADLK 821
           P E+ N  E   E+Q P VV P+PE++IAIKAAIVNSQTLEEVARLEKALKSGQLPADLK
Sbjct: 181 PGEMPNALEPAEEQQIPKVVGPSPEELIAIKAAIVNSQTLEEVARLEKALKSGQLPADLK 240

Query: 822 -IPDDDMATDITSKDDKMEVDVPKEATEQLEDAENQQKNEAPPAAVE 959
            + ++  A  +  KDDKM    P  + ++ +  E Q+ ++  P   E
Sbjct: 241 SLVENTRADVVNEKDDKMVSSNPNTSRDEPKTVEEQKNDDVAPMEQE 287


>ref|XP_002512712.1| U2 small nuclear ribonucleoprotein A, putative [Ricinus communis]
           gi|223548673|gb|EEF50164.1| U2 small nuclear
           ribonucleoprotein A, putative [Ricinus communis]
          Length = 287

 Score =  326 bits (836), Expect = 7e-87
 Identities = 178/289 (61%), Positives = 204/289 (70%), Gaps = 1/289 (0%)
 Frame = +3

Query: 102 MVRLTADLIWKSPHFFNAVAERELDLRGNKIAVMENLGATEDQFDTIDLSDNEIVKLENF 281
           MVRLTADLIWKSPHFFNA+ ERELDLRGNKI V+ENLGATEDQFDTIDLSDNEIVKLEN 
Sbjct: 1   MVRLTADLIWKSPHFFNAIKERELDLRGNKIPVIENLGATEDQFDTIDLSDNEIVKLENM 60

Query: 282 PYLGRLGXXXXXXXXXXXXXXXXGEYLPKXXXXXXXXXXXXXXXEIDPLASLPKLRFLSL 461
           PYL RLG                GE+LPK               EIDPLASLPKL+FLSL
Sbjct: 61  PYLTRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL 120

Query: 462 LDNNITKKPNYRLYVIYKLKSLRLLDFKKVKHKERIEAENLFXXXXXXXXXXXXXXXXFT 641
           LDN+ITKKPNYRLY+I+KLKSLR+LDFKKVK KER+EAENLF                F 
Sbjct: 121 LDNSITKKPNYRLYIIHKLKSLRVLDFKKVKSKERMEAENLFASKEVEEEAIRESAKTFI 180

Query: 642 PAELQNVPEDPMEEQAPTVVAPTPEQIIAIKAAIVNSQTLEEVARLEKALKSGQLPADLK 821
           P E+ NV ED  E+Q P VVAPTPEQIIAIKAAIVNSQTLEEVARLEKAL SGQ+P DL 
Sbjct: 181 PGEVPNVTEDAEEQQNPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKALNSGQIPTDLN 240

Query: 822 IPDDDMATD-ITSKDDKMEVDVPKEATEQLEDAENQQKNEAPPAAVEQD 965
           I D+D   + +  KDDKM  D   +   +  + + Q+ +++  A++EQ+
Sbjct: 241 IFDNDSELNTVQEKDDKMATDGDNKTDHEPSNLDEQKDSDS--ASMEQE 287


>gb|ADG27843.1| U2 small nuclear ribonucleoprotein A [Gossypium hirsutum]
          Length = 285

 Score =  323 bits (827), Expect = 8e-86
 Identities = 180/288 (62%), Positives = 202/288 (70%)
 Frame = +3

Query: 102 MVRLTADLIWKSPHFFNAVAERELDLRGNKIAVMENLGATEDQFDTIDLSDNEIVKLENF 281
           MV+LTADLIWK PHFFNA+ ERELDLRGNKIAV+ENLGATEDQFDTIDLSDNEIVKL+NF
Sbjct: 1   MVKLTADLIWKCPHFFNALKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLDNF 60

Query: 282 PYLGRLGXXXXXXXXXXXXXXXXGEYLPKXXXXXXXXXXXXXXXEIDPLASLPKLRFLSL 461
           PYL RLG                GE+LP                EIDPL+SLPKL+FLSL
Sbjct: 61  PYLKRLGTLLINNNRVTRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLSSLPKLQFLSL 120

Query: 462 LDNNITKKPNYRLYVIYKLKSLRLLDFKKVKHKERIEAENLFXXXXXXXXXXXXXXXXFT 641
           LDNNITKKPNYRLYVI+KLKSLR+LDFKKVK KER+EAENLF                  
Sbjct: 121 LDNNITKKPNYRLYVIHKLKSLRVLDFKKVKAKERLEAENLFASKEAEEEIKKESTKTVA 180

Query: 642 PAELQNVPEDPMEEQAPTVVAPTPEQIIAIKAAIVNSQTLEEVARLEKALKSGQLPADLK 821
           P E+ NV E   EEQ P VVAPTPEQI+AIKAAIVNSQTLEEVARLEKAL++GQLPADLK
Sbjct: 181 PKEVPNVSEVAEEEQMPKVVAPTPEQILAIKAAIVNSQTLEEVARLEKALQTGQLPADLK 240

Query: 822 IPDDDMATDITSKDDKMEVDVPKEATEQLEDAENQQKNEAPPAAVEQD 965
           IP DD        D+K   D+  E+  +  D  ++ KNE  PA +EQ+
Sbjct: 241 IPGDD-TNAAKGGDEKKVSDIQNESNVE-PDNMDEDKNE-EPAPMEQE 285