BLASTX nr result
ID: Cimicifuga21_contig00006337
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cimicifuga21_contig00006337
(2205 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor rpoD ... 493 e-137
emb|CAN83254.1| hypothetical protein VITISV_036980 [Vitis vinifera] 476 e-131
ref|XP_002308586.1| predicted protein [Populus trichocarpa] gi|2... 461 e-127
ref|XP_002516489.1| RNA polymerase sigma factor rpoD, putative [... 448 e-123
dbj|BAA22215.1| plastid RNA polymerase sigma-subunit [Arabidopsi... 389 e-105
>ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
gi|296081598|emb|CBI20603.3| unnamed protein product
[Vitis vinifera]
Length = 561
Score = 493 bits (1270), Expect = e-137
Identities = 274/578 (47%), Positives = 366/578 (63%), Gaps = 1/578 (0%)
Frame = +1
Query: 115 MGIRFTLDWKWGSQIRSPFLANQPTMQKQHSTSVRGRDASYEPARAFILSVTPEDSDTMC 294
MG+ F L+ KW I P L N P+ + ++SV+G++AS++ R SVT ED +++
Sbjct: 1 MGMGFRLNLKWDFPISCPTLTNSPS--RLCTSSVQGKEASFDSTRFSFPSVTSEDCESLY 58
Query: 295 KDPSKNYTNSFGVLQVMETGSKEMKXXXXXXXXXXXXXXXXXXXXXXXXXMNLNMGLHRA 474
KDP K + S G LQ E M+ M + H
Sbjct: 59 KDPFKPFACSSGALQTFENDYSAMEAMK----------------------MKIGKCSHGD 96
Query: 475 FYDQIDDIRMPIQDITSISCQGLQVKEKSRFILLCENLQKIEKVVFDEDLTTLERDILVQ 654
+ ++ + PI + S S GLQ + S+F LL ENL +E++ D ++ LERDI+VQ
Sbjct: 97 LFKIVNASQAPIGEDISASVAGLQASKASQFSLLLENLDILEEMFADSNMVRLERDIMVQ 156
Query: 655 LEKLGALQLFHACLSRTLKSSATINEPTQLPKPPRDLFMEGEIDDQVGNMIVXXXXXXXX 834
L +LGAL+LF CLSRTLK+S + + + + R+ G +DD + ++V
Sbjct: 157 LGRLGALKLFQICLSRTLKTSTSFDLFSAPTEHIRECQTNGTVDDHLDKVVVRSGKKEER 216
Query: 835 XXXXXXXXXXAAKISTLAPSSKTFKLSR-RAIGSNVGNSSKSRSRRHKVTRNEAEMSRRV 1011
A I SKT + R S V + SR +R +NEAEMS+ V
Sbjct: 217 KSKRERALEKADNIYAFPLPSKTIRKGPGRPSVSTVKRTLNSRRKRLMNAKNEAEMSKGV 276
Query: 1012 KDVADLERIRTKLEVESGQVASFRRWAEVVGVEEKVLQQRLHYGWFCRDKLLRSTRSLIV 1191
K VA+LERIR LE E G VAS WAE GV++KVLQQ+L +GW+CRD+LLRST SL++
Sbjct: 277 KLVANLERIRATLEEEIGHVASLSNWAEAAGVDKKVLQQQLQFGWYCRDELLRSTHSLVL 336
Query: 1192 YLARNYRGLGISLEDLYQAGNVGVLKGAERFDHTRGYQFSTYVQYWIRKAMSTLIEQHSR 1371
Y+ARNYRG+G++ ED+ QAGN+GVL+GAERFDHT+GY+FSTYVQYWIRK+MSTL+ +H+R
Sbjct: 337 YIARNYRGMGVAFEDILQAGNLGVLQGAERFDHTKGYRFSTYVQYWIRKSMSTLVARHAR 396
Query: 1372 EIQIPGTLSRRIYQIKKSRKALYSLHGRYPDEDEIARFSGLSVAKIRFASKCPRVVGSVD 1551
++IP TL+R I QI+K+RKALY HGRYPD++EIA+F+GLS+AKIR A C RVVGS D
Sbjct: 397 GVKIPFTLNRAIGQIQKARKALYKSHGRYPDDNEIAKFTGLSLAKIRSAGNCLRVVGSTD 456
Query: 1552 QKIGDNPSAKFTEFTPDTSIKTPEETVMRQHMQKDLYELLQGLHPRESQVLVLRYGFWDG 1731
Q D A EFTPDTSIK+PEE M+Q +KD++ LL+GL PRE Q+LVLRYGF +
Sbjct: 457 QSFQDCWGATILEFTPDTSIKSPEEGFMQQCKRKDIHNLLKGLDPRERQILVLRYGFGEQ 516
Query: 1732 QCKSLEEIARIFKCTKEWIRKIEKSALTKLRKEEVQRN 1845
Q KSLEEI R F +KEWIRK+EK+AL LR EE+ +N
Sbjct: 517 QRKSLEEIGRRFNVSKEWIRKLEKTALANLRDEEICQN 554
>emb|CAN83254.1| hypothetical protein VITISV_036980 [Vitis vinifera]
Length = 611
Score = 476 bits (1224), Expect = e-131
Identities = 261/545 (47%), Positives = 348/545 (63%), Gaps = 1/545 (0%)
Frame = +1
Query: 214 VRGRDASYEPARAFILSVTPEDSDTMCKDPSKNYTNSFGVLQVMETGSKEMKXXXXXXXX 393
++G++AS++ R SVT ED +++ KDP K + S G LQ E M+
Sbjct: 82 IQGKEASFDSTRFSFPSVTSEDCESLYKDPFKPFACSSGALQTFENDYSAMEAMK----- 136
Query: 394 XXXXXXXXXXXXXXXXXMNLNMGLHRAFYDQIDDIRMPIQDITSISCQGLQVKEKSRFIL 573
M + H + ++ + PI + S S GLQ + S+F L
Sbjct: 137 -----------------MKIGKCSHGDLFKIVNASQAPIGEDISASVAGLQASKASQFSL 179
Query: 574 LCENLQKIEKVVFDEDLTTLERDILVQLEKLGALQLFHACLSRTLKSSATINEPTQLPKP 753
L ENL +E++ D ++ LERDI+VQL +LGAL+LF CLSRTLK+S + + + +
Sbjct: 180 LLENLDILEEMFADSNMVRLERDIMVQLGRLGALKLFQICLSRTLKTSTSFDLFSAPTEH 239
Query: 754 PRDLFMEGEIDDQVGNMIVXXXXXXXXXXXXXXXXXXAAKISTLAPSSKTFKLSR-RAIG 930
R+ G +DD + ++V A I SKT + R
Sbjct: 240 IRECQTNGTVDDHLDKVVVRSGKKEERKSKRERALEKADNIYAFPLPSKTIRKGPGRPSV 299
Query: 931 SNVGNSSKSRSRRHKVTRNEAEMSRRVKDVADLERIRTKLEVESGQVASFRRWAEVVGVE 1110
S V + SR +R +NEAEMS+ VK VA+LERIR LE E G VAS WAE GV+
Sbjct: 300 STVKRTLNSRRKRLMNAKNEAEMSKGVKLVANLERIRATLEEEIGHVASLSNWAEAAGVD 359
Query: 1111 EKVLQQRLHYGWFCRDKLLRSTRSLIVYLARNYRGLGISLEDLYQAGNVGVLKGAERFDH 1290
+KVLQQ+L +GW+CRD+LLRST SL++Y+ARNYRG+G++ ED+ QAGN+GVL+GAERFDH
Sbjct: 360 KKVLQQQLQFGWYCRDELLRSTHSLVLYIARNYRGMGVAFEDILQAGNLGVLQGAERFDH 419
Query: 1291 TRGYQFSTYVQYWIRKAMSTLIEQHSREIQIPGTLSRRIYQIKKSRKALYSLHGRYPDED 1470
T+GY+FSTYVQYWIRK+MSTL+ +H+R ++IP TL+R I QI+K+RKALY HGRYPD++
Sbjct: 420 TKGYRFSTYVQYWIRKSMSTLVARHARGVKIPFTLNRAIGQIQKARKALYKSHGRYPDDN 479
Query: 1471 EIARFSGLSVAKIRFASKCPRVVGSVDQKIGDNPSAKFTEFTPDTSIKTPEETVMRQHMQ 1650
EIA+F+GLS+AKIR A C RVVGS DQ D A EFTPDTSIK+PEE M+Q +
Sbjct: 480 EIAKFTGLSLAKIRSAGNCLRVVGSTDQSFQDCWGATILEFTPDTSIKSPEEGFMQQCKR 539
Query: 1651 KDLYELLQGLHPRESQVLVLRYGFWDGQCKSLEEIARIFKCTKEWIRKIEKSALTKLRKE 1830
KD++ LL+GL PRE Q+LVLRYGF + Q KSLEEI R F +KEWIRK+EK+AL LR E
Sbjct: 540 KDIHNLLKGLDPRERQILVLRYGFGEQQRKSLEEIGRRFNVSKEWIRKLEKTALANLRDE 599
Query: 1831 EVQRN 1845
E+ +N
Sbjct: 600 EICQN 604
>ref|XP_002308586.1| predicted protein [Populus trichocarpa] gi|222854562|gb|EEE92109.1|
predicted protein [Populus trichocarpa]
Length = 559
Score = 461 bits (1187), Expect = e-127
Identities = 262/578 (45%), Positives = 367/578 (63%), Gaps = 1/578 (0%)
Frame = +1
Query: 115 MGIRFTLDWKWGSQIRSPFLANQPTMQKQHSTSVRGRDASYEPARAFILSVTPEDSDTMC 294
MG+ F L KWGS ++S N +M S S RG +AS AR LSV E+ D +
Sbjct: 1 MGVGFRLTPKWGSPMQSHSATNSTSMFS--SFSARGMEASVNQARLSFLSVVSEEGDILN 58
Query: 295 KDPSKNYTNSFGVLQVMETGSKEMKXXXXXXXXXXXXXXXXXXXXXXXXXMNLNMGLHRA 474
K K++ S Q +E +M+ MN++ H +
Sbjct: 59 KHSFKSFACS-SAAQNVENDCLQMERLK----------------------MNVDKTSHVS 95
Query: 475 FYDQIDDIRMPIQDITSISCQGLQVKEKSRFILLCENLQKIEKVVFDEDLTTLERDILVQ 654
+ + + ++ +++ S S L+ + SR L +NL +EK+V D D LERDIL+Q
Sbjct: 96 INNMMGNDKVSVEEEISTSHTRLRERMTSRISFLLDNLDTLEKLVADLDALKLERDILLQ 155
Query: 655 LEKLGALQLFHACLSRTLKSSATINEPTQLPKPPRDLFMEGEIDDQVGNMIVXXXXXXXX 834
L +LGAL+ F+ACLSRTL++S ++ + + +G + D G +V
Sbjct: 156 LGRLGALEFFNACLSRTLQTSNVLDLSAVPTENTGESKTDGMLGDLTGKTVVRTGKKEER 215
Query: 835 XXXXXXXXXXAAKIST-LAPSSKTFKLSRRAIGSNVGNSSKSRSRRHKVTRNEAEMSRRV 1011
K +T L+ SKT + + + V +S S SRR + RNEA+M+R V
Sbjct: 216 KFRRERAASDNGKKTTSLSLPSKTVQ-NNLPKPTFVKRTSSSSSRRSLIARNEAKMTRGV 274
Query: 1012 KDVADLERIRTKLEVESGQVASFRRWAEVVGVEEKVLQQRLHYGWFCRDKLLRSTRSLIV 1191
K +DLERIRT LE E+GQV S WAE G+++KVLQQ+L +GW+CRD+L+++T SL++
Sbjct: 275 KVASDLERIRTTLEEETGQVVSLSCWAEATGLDKKVLQQQLQFGWYCRDELIKNTHSLVL 334
Query: 1192 YLARNYRGLGISLEDLYQAGNVGVLKGAERFDHTRGYQFSTYVQYWIRKAMSTLIEQHSR 1371
Y+ARNYRG+GI++EDL QAGN+G+L+GAERFD TRGY+FSTYVQYWIRK+M ++E+H+R
Sbjct: 335 YIARNYRGMGIAMEDLIQAGNLGLLQGAERFDPTRGYRFSTYVQYWIRKSMLKIVERHAR 394
Query: 1372 EIQIPGTLSRRIYQIKKSRKALYSLHGRYPDEDEIARFSGLSVAKIRFASKCPRVVGSVD 1551
IQIP LSR I +I+K+RKAL + HGRYPD+ E+A+F+GLS+AKI A KC RVV S+D
Sbjct: 395 GIQIPYALSRSINKIQKARKALSNSHGRYPDDWEVAKFTGLSLAKIESAQKCLRVVASLD 454
Query: 1552 QKIGDNPSAKFTEFTPDTSIKTPEETVMRQHMQKDLYELLQGLHPRESQVLVLRYGFWDG 1731
QKIG+ AK++EF PD SI+ PEE VMRQHM++++Y+LL+GL RE QV+VLRYGF D
Sbjct: 455 QKIGEGHYAKYSEFIPDMSIQNPEEAVMRQHMREEIYDLLRGLDSREKQVMVLRYGFKDN 514
Query: 1732 QCKSLEEIARIFKCTKEWIRKIEKSALTKLRKEEVQRN 1845
Q KSL EI R+F+ +KE +RKIEK + KLR E ++RN
Sbjct: 515 QPKSLAEIGRLFRVSKERVRKIEKKIMIKLRDEGIRRN 552
>ref|XP_002516489.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
gi|223544309|gb|EEF45830.1| RNA polymerase sigma factor
rpoD, putative [Ricinus communis]
Length = 560
Score = 448 bits (1152), Expect = e-123
Identities = 262/582 (45%), Positives = 362/582 (62%), Gaps = 5/582 (0%)
Frame = +1
Query: 115 MGIRFTLDWKWGSQIRSPFLANQPTMQKQHSTS--VRGRDASYEPARAFILSVTPEDSDT 288
MG F L+ K SP N P+ +S VRGR+A+ +R LSV E+ D
Sbjct: 1 MGFGFRLNLKLDFPFHSP---NSPSRLSSSPSSSFVRGREATSYQSRLSFLSVISEEGDI 57
Query: 289 MCKDPSKNYTNSFGVLQVMETGSKEMKXXXXXXXXXXXXXXXXXXXXXXXXXMNLNMGLH 468
+DP K Y S+ V V S+ +N G
Sbjct: 58 AHRDPLKTYAYSYAVQTVENEHSQ-------------------------GEGFKVNFGKR 92
Query: 469 RAF-YDQIDDIRMPIQDITSISCQGLQVKEKSRFILLCENLQKIEKVVFDEDLTTLERDI 645
F + I D + +++ +S + + SRF LL ENL +E+ D D + LE DI
Sbjct: 93 SHFGLNIIGDAEVSLKEDIFVSPSSTK-ERTSRFSLLLENLNILEQSFADSDASKLEEDI 151
Query: 646 LVQLEKLGALQLFHACLSRTLKSSATINEPTQLPKPPRDLFMEG-EIDDQVGNMIVXXXX 822
L+QL KLGAL+LF+ CL+RTL+++ + + + + G I++Q+ ++
Sbjct: 152 LLQLGKLGALKLFNTCLTRTLETTNVLEVSDVHTEIIGECNINGTSINNQIKVVVHTAKK 211
Query: 823 XXXXXXXXXXXXXXAAKISTL-APSSKTFKLSRRAIGSNVGNSSKSRSRRHKVTRNEAEM 999
K +L PS S + S+ +SKS+SRR + RNEAEM
Sbjct: 212 EERKSRRERASARKGHKSPSLPLPSRPIQSGSEKPTVSSGKKASKSKSRRLIIARNEAEM 271
Query: 1000 SRRVKDVADLERIRTKLEVESGQVASFRRWAEVVGVEEKVLQQRLHYGWFCRDKLLRSTR 1179
+R +K +ADLE+IRT LE E+ +V S WAE G++ KVLQQ+L +GW+CRD+L++STR
Sbjct: 272 ARGIKVLADLEKIRTTLEEETERVVSLSCWAEAAGLDVKVLQQQLSFGWYCRDELIKSTR 331
Query: 1180 SLIVYLARNYRGLGISLEDLYQAGNVGVLKGAERFDHTRGYQFSTYVQYWIRKAMSTLIE 1359
SL++Y ARNYRG GI+LEDL QAGN+GVL+GAERFDHTRGY+FSTYVQYWIRK+MS ++
Sbjct: 332 SLVLYFARNYRGTGIALEDLLQAGNLGVLEGAERFDHTRGYRFSTYVQYWIRKSMSKIVS 391
Query: 1360 QHSREIQIPGTLSRRIYQIKKSRKALYSLHGRYPDEDEIARFSGLSVAKIRFASKCPRVV 1539
+ +R IQIP TLSR IYQI+K+RKAL + +G+YPD+DEIA+++GLS+AKI AS+C RVV
Sbjct: 392 RLARGIQIPCTLSRAIYQIQKARKALTTSNGKYPDDDEIAKYTGLSLAKIESASRCLRVV 451
Query: 1540 GSVDQKIGDNPSAKFTEFTPDTSIKTPEETVMRQHMQKDLYELLQGLHPRESQVLVLRYG 1719
GS+DQKIG++ +AK+ EF PDTS+++PEE VMRQHM +D++ LL+ L RE QVL+LR+G
Sbjct: 452 GSIDQKIGESLNAKYLEFLPDTSVQSPEEVVMRQHMIQDMHNLLRSLDSRERQVLILRFG 511
Query: 1720 FWDGQCKSLEEIARIFKCTKEWIRKIEKSALTKLRKEEVQRN 1845
D Q KSLEEI R F +KEW+R++EK +T+LR EE RN
Sbjct: 512 LNDYQPKSLEEIGRHFHVSKEWVRRLEKRVMTRLRNEETCRN 553
>dbj|BAA22215.1| plastid RNA polymerase sigma-subunit [Arabidopsis thaliana]
Length = 571
Score = 389 bits (999), Expect = e-105
Identities = 208/435 (47%), Positives = 293/435 (67%), Gaps = 12/435 (2%)
Frame = +1
Query: 562 RFILLCENLQKIEKVVFDEDLTTLERDILVQLEKLGALQLFHACLSRTLKSSAT--INEP 735
++ LL +NL +E+ D +ERDI++Q+ KLGA +LF CLSR SS T +++
Sbjct: 147 QYNLLAKNLLALEETFVALDSVRMERDIMLQMGKLGAAELFKTCLSRYRGSSITSCLSDT 206
Query: 736 TQL--PKPPRDLFMEGEIDDQVGNMIVXXXXXXXXXXXXXXXXXXAAKISTLAPSS--KT 903
T+L P + +F+ A + S A + +
Sbjct: 207 TELVDTTPNQQVFVSSR----------------------RKVKKKARRSSVTAENGDQSS 244
Query: 904 FKLSRRAIGSNVG-----NSSKSRSRRHKVTRNEAEMSRRVKDVADLERIRTKLEVESGQ 1068
+ R +N+ K R +R +++RNE EMS VK VAD+ERIRT+LE ESG+
Sbjct: 245 LPIGLRTTWNNIDVPRVRRPPKYRKKRERISRNETEMSTGVKIVADMERIRTQLEEESGK 304
Query: 1069 VASFRRWAEVVGVEEKVLQQRLHYGWFCRDKLLRSTRSLIVYLARNYRGLGISLEDLYQA 1248
VAS WA G+ EK+L + LHYGW+CRD+L++STRSL+++LARNYRG+GI+ EDL QA
Sbjct: 305 VASLSCWAAAAGMNEKLLMRNLHYGWYCRDELVKSTRSLVLFLARNYRGMGIAHEDLIQA 364
Query: 1249 GNVGVLKGAERFDHTRGYQFSTYVQYWIRKAMSTLIEQHSREIQIPGTLSRRIYQIKKSR 1428
G VGVL+GAERFDHTRGY+FSTYVQYWIRK+MST++ +H+R + IP ++ R I I+K+R
Sbjct: 365 GYVGVLQGAERFDHTRGYKFSTYVQYWIRKSMSTMVSRHARGVHIPSSIIRTINHIQKAR 424
Query: 1429 KALYSLHG-RYPDEDEIARFSGLSVAKIRFASKCPRVVGSVDQKIGDNPSAKFTEFTPDT 1605
K L + HG +Y ++EIA+ +G SV KIR A++C +VVGS+D+K+GD + KF EFTPDT
Sbjct: 425 KTLKTSHGIKYAADEEIAKLTGHSVKKIRAANQCLKVVGSIDKKVGDCFTTKFLEFTPDT 484
Query: 1606 SIKTPEETVMRQHMQKDLYELLQGLHPRESQVLVLRYGFWDGQCKSLEEIARIFKCTKEW 1785
++++PEE VMRQ ++D+++LL+GL PRE QV+VLRYG D + KSLEEI ++FK +KEW
Sbjct: 485 TMESPEEAVMRQSARRDIHDLLEGLEPREKQVMVLRYGLQDYRPKSLEEIGKLFKVSKEW 544
Query: 1786 IRKIEKSALTKLRKE 1830
IRKIE+ A+ KLR +
Sbjct: 545 IRKIERRAMAKLRDQ 559