BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00006297
         (851 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003568492.1| PREDICTED: DNA-directed RNA polymerase II su...   346   3e-93
dbj|BAJ94721.1| predicted protein [Hordeum vulgare subsp. vulgare]    345   7e-93
dbj|BAK02244.1| predicted protein [Hordeum vulgare subsp. vulgar...   345   1e-92
ref|NP_001055483.1| Os05g0400700 [Oryza sativa Japonica Group] g...   343   2e-92
ref|XP_004150740.1| PREDICTED: DNA-directed RNA polymerase II su...   343   4e-92

>ref|XP_003568492.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
           [Brachypodium distachyon]
          Length = 177

 Score =  346 bits (888), Expect = 3e-93
 Identities = 168/176 (95%), Positives = 175/176 (99%)
 Frame = +2

Query: 128 MFFHIVLERNMQLHPRHFGPNLRDKLVAKLMQDVEGTCSGRHGFVVAITGVDSIGKGLIR 307
           MFFHIVLERNMQLHPRHFGP+LRDKLVAKLM+DVEGTCSGRHGFVVAITGV+ IGKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRHFGPHLRDKLVAKLMKDVEGTCSGRHGFVVAITGVEDIGKGLIR 60

Query: 308 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 487
           +GTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  EGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 488 SGDIPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPGAA 655
           SGD+PNYTTSDGSVKIQK+SEVRLKIIGTRVDATEIFCIGTIKDDFLGVI+DPGAA
Sbjct: 121 SGDVPNYTTSDGSVKIQKESEVRLKIIGTRVDATEIFCIGTIKDDFLGVISDPGAA 176


>dbj|BAJ94721.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 236

 Score =  345 bits (885), Expect = 7e-93
 Identities = 167/177 (94%), Positives = 175/177 (98%)
 Frame = +2

Query: 125 KMFFHIVLERNMQLHPRHFGPNLRDKLVAKLMQDVEGTCSGRHGFVVAITGVDSIGKGLI 304
           +MFFHIVLERNMQLHPRHFGP+LRDKLVAKLM+DVEGTCSGRHGFVVAITGV+ IGKGLI
Sbjct: 59  EMFFHIVLERNMQLHPRHFGPHLRDKLVAKLMKDVEGTCSGRHGFVVAITGVEDIGKGLI 118

Query: 305 RDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEF 484
           R+GTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEF
Sbjct: 119 REGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEF 178

Query: 485 QSGDIPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPGAA 655
           QSGD+PNYTTSDGSVKIQK+SEVRLKIIGTRVDATEIFCIGTIKDDFLGVI+DPG A
Sbjct: 179 QSGDVPNYTTSDGSVKIQKESEVRLKIIGTRVDATEIFCIGTIKDDFLGVISDPGGA 235


>dbj|BAK02244.1| predicted protein [Hordeum vulgare subsp. vulgare]
           gi|326505504|dbj|BAJ95423.1| predicted protein [Hordeum
           vulgare subsp. vulgare]
          Length = 177

 Score =  345 bits (884), Expect = 1e-92
 Identities = 167/176 (94%), Positives = 174/176 (98%)
 Frame = +2

Query: 128 MFFHIVLERNMQLHPRHFGPNLRDKLVAKLMQDVEGTCSGRHGFVVAITGVDSIGKGLIR 307
           MFFHIVLERNMQLHPRHFGP+LRDKLVAKLM+DVEGTCSGRHGFVVAITGV+ IGKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRHFGPHLRDKLVAKLMKDVEGTCSGRHGFVVAITGVEDIGKGLIR 60

Query: 308 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 487
           +GTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  EGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 488 SGDIPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPGAA 655
           SGD+PNYTTSDGSVKIQK+SEVRLKIIGTRVDATEIFCIGTIKDDFLGVI+DPG A
Sbjct: 121 SGDVPNYTTSDGSVKIQKESEVRLKIIGTRVDATEIFCIGTIKDDFLGVISDPGGA 176


>ref|NP_001055483.1| Os05g0400700 [Oryza sativa Japonica Group]
           gi|50878367|gb|AAT85142.1| putative RNA polymerase II
           subunit 5 [Oryza sativa Japonica Group]
           gi|113579034|dbj|BAF17397.1| Os05g0400700 [Oryza sativa
           Japonica Group] gi|125552268|gb|EAY97977.1| hypothetical
           protein OsI_19896 [Oryza sativa Indica Group]
           gi|215704281|dbj|BAG93121.1| unnamed protein product
           [Oryza sativa Japonica Group]
           gi|218196761|gb|EEC79188.1| hypothetical protein
           OsI_19893 [Oryza sativa Indica Group]
           gi|222631528|gb|EEE63660.1| hypothetical protein
           OsJ_18478 [Oryza sativa Japonica Group]
          Length = 177

 Score =  343 bits (881), Expect = 2e-92
 Identities = 165/176 (93%), Positives = 175/176 (99%)
 Frame = +2

Query: 128 MFFHIVLERNMQLHPRHFGPNLRDKLVAKLMQDVEGTCSGRHGFVVAITGVDSIGKGLIR 307
           MFFHIVLERNMQLHPRHFGP+LRDKLV+KL++DVEGTCSGRHGFVVAITGV+ +GKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRHFGPHLRDKLVSKLIKDVEGTCSGRHGFVVAITGVEDVGKGLIR 60

Query: 308 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 487
           +GTG+VTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  EGTGYVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 488 SGDIPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPGAA 655
           SGD+PNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVI+DPGAA
Sbjct: 121 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVISDPGAA 176


>ref|XP_004150740.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
           [Cucumis sativus] gi|449518487|ref|XP_004166273.1|
           PREDICTED: DNA-directed RNA polymerase II subunit
           RPB7-like [Cucumis sativus]
          Length = 176

 Score =  343 bits (879), Expect = 4e-92
 Identities = 166/176 (94%), Positives = 173/176 (98%)
 Frame = +2

Query: 128 MFFHIVLERNMQLHPRHFGPNLRDKLVAKLMQDVEGTCSGRHGFVVAITGVDSIGKGLIR 307
           MFFHIVLERNMQLHPRHFG NLR+ LV+KLM+DVEGTCSGRHGFVVAITG+++IGKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 60

Query: 308 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 487
           DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 488 SGDIPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPGAA 655
           SGD+PNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDP AA
Sbjct: 121 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA 176