BLASTX nr result
ID: Cimicifuga21_contig00006127
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cimicifuga21_contig00006127
(2748 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003635109.1| PREDICTED: pentatricopeptide repeat-containi... 639 e-180
ref|XP_002527978.1| pentatricopeptide repeat-containing protein,... 604 e-170
ref|XP_003541593.1| PREDICTED: pentatricopeptide repeat-containi... 550 e-154
dbj|BAC41999.1| unknown protein [Arabidopsis thaliana] 550 e-153
ref|NP_568460.1| pentatricopeptide repeat-containing protein [Ar... 549 e-153
>ref|XP_003635109.1| PREDICTED: pentatricopeptide repeat-containing protein At5g24830-like
[Vitis vinifera]
Length = 580
Score = 639 bits (1648), Expect = e-180
Identities = 310/580 (53%), Positives = 428/580 (73%), Gaps = 15/580 (2%)
Frame = +1
Query: 106 VSIVANEDFQVILRIFNNTNIKTLDFIK-GISQIFANILCEKSDIDLIHRD-------PM 261
+SIV E V R+FN ++ IK ++QIFAN+ K +R P
Sbjct: 3 LSIVFQES-HVFFRLFN----ACIESIKHDVAQIFANVFSFKPYSPANNRPSGHGNLLPF 57
Query: 262 VIED------KPYQIKTQDWVTRKQTNHNGNGDPHAAFNALDSVLRSTLERLKKIREGIL 423
+ED YQ+ TQDW ++ + H+ DP FN LD++L+ +LERLK +RE +
Sbjct: 58 ALEDLIISVGNQYQVTTQDWFSQNK-GHDEERDPRVVFNVLDAILKDSLERLKMMRESVS 116
Query: 424 MVGTGLWECSPKTSYARHAGVIRDLCVEGKIGAALQLRYSMLQNCVVLDVVTHNYLINGL 603
+ GL C+ + Y +IR+LC+EGK+ AAL LR M+Q V+ DV+THNYL+NGL
Sbjct: 117 LTKIGLNGCTLEMDYTGCVAMIRNLCLEGKLRAALWLRNKMIQKGVIPDVLTHNYLVNGL 176
Query: 604 CKMGNLGKANRLVEEMSEMGPSPNCVTYNTLINGYCRLDNVDRALYIFSLMGKNDIKPDR 783
CK G+L KA+ LV EM E+GPSPNC T+NT I GYC +NVD+ALY+FS M + I P++
Sbjct: 177 CKAGDLEKADNLVREMLEIGPSPNCATFNTFIKGYCLNNNVDKALYLFSTMANSGIGPNK 236
Query: 784 VTCNILTHALCRKGLLEDAKKLLTEILDEN-DEASSNIITSTILIDSCCKKGEIDQALEL 960
VT NIL HALC+KGLL+DA+KLL +ILD++ + +S+IITSTI +D C KKG++ QAL
Sbjct: 237 VTYNILIHALCKKGLLKDARKLLEKILDDDCGKETSDIITSTIFMDGCLKKGDMVQALVH 296
Query: 961 WNEMFHKGIQVDTVAYNVLINGLCWNRNMKLAYRCFCDMFKRGILPDVYTYNTIITGLCK 1140
W+EM +G Q+D VAYNVLI+G C ++M AYR FC+MFKRG+LPD++TYNT+I+G CK
Sbjct: 297 WDEMLQRGTQIDVVAYNVLIHGFCLIQDMNSAYRYFCEMFKRGLLPDIFTYNTLISGFCK 356
Query: 1141 EGKFDEACGVHSTMSRMGVPPDEITYKIVIQGLCLSGNVNKANEFLLSMLDSLVIPDPLI 1320
G DEAC +H MS+MG PD I+YK++IQGLC+ G+V +AN+FL+ ML++L++P+PLI
Sbjct: 357 IGNLDEACYIHGVMSKMGAAPDLISYKMIIQGLCIHGDVIRANQFLVCMLENLMVPEPLI 416
Query: 1321 WNVVIDGYGKCGNVDHASLVRDKMVAAGVTPNIFTYNGLIHAQVKGGNIIDAHFLKQQML 1500
WNVVIDG+G+ G++ +A +RD+MV+ G+ PN+FTYN LIHAQ+KGGNI+DAH +K++ML
Sbjct: 417 WNVVIDGHGRHGDLSNALSIRDQMVSFGIPPNVFTYNALIHAQIKGGNIVDAHSIKKEML 476
Query: 1501 LNGVLPDIVSYNLLIGSACNSGQVRFGIQLHDEMIRRGYEPDIVTYTEIIRGHCMKGNIE 1680
LNG+ PD+V+YNLLIG+ACN G++ F ++L+DEM+RRGYEPDI+TYTE+IRG C++G++
Sbjct: 477 LNGIYPDVVTYNLLIGAACNFGRIHFALRLYDEMLRRGYEPDIITYTELIRGFCIRGHVM 536
Query: 1681 EAIELFTKIRRSGLPVDHVPYQILIKKYCNMREPQKAFDL 1800
EA EL K++RSGL +DH P+QILI+KYC R P +A+DL
Sbjct: 537 EAEELLAKLQRSGLSIDHAPFQILIQKYCRTRVPGRAYDL 576
>ref|XP_002527978.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223532604|gb|EEF34390.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 621
Score = 604 bits (1557), Expect = e-170
Identities = 294/538 (54%), Positives = 394/538 (73%), Gaps = 3/538 (0%)
Frame = +1
Query: 169 KTLDFIKG-ISQIFANILCEKSDIDLIHRDPMVIEDKPYQIKTQDWVTRKQTNHNGNGDP 345
+ +D IK +QIFANI C +S ID +D + + + R N N DP
Sbjct: 25 RAMDTIKHHTAQIFANIFCRESIID--PNASYFFDDMVKTLSNRCRLRRDNKNLNDEDDP 82
Query: 346 HAAFNALDSVLRSTLERLKKIRE--GILMVGTGLWECSPKTSYARHAGVIRDLCVEGKIG 519
FN LD++L+ +LERLK +RE GI V GL S SYA HA ++RDLC+ GK+G
Sbjct: 83 QVVFNVLDAMLKGSLERLKSMRESIGISSVKVGLAGRSVDVSYAGHASLVRDLCLAGKLG 142
Query: 520 AALQLRYSMLQNCVVLDVVTHNYLINGLCKMGNLGKANRLVEEMSEMGPSPNCVTYNTLI 699
AAL LR +L V D++THN+L+NGLC G+L KA+ L++EM E+GPSPNC T+NT I
Sbjct: 143 AALWLRRKLLHKGFVPDILTHNFLVNGLCNSGDLQKADCLIKEMLEIGPSPNCATFNTFI 202
Query: 700 NGYCRLDNVDRALYIFSLMGKNDIKPDRVTCNILTHALCRKGLLEDAKKLLTEILDENDE 879
GYC L+NVD+ALY+FS M + +KP+RVT NIL HALC++GLLEDAKKLL E+LD+N++
Sbjct: 203 KGYCLLNNVDKALYLFSSMSDSGVKPNRVTLNILVHALCKRGLLEDAKKLLGELLDDNEK 262
Query: 880 ASSNIITSTILIDSCCKKGEIDQALELWNEMFHKGIQVDTVAYNVLINGLCWNRNMKLAY 1059
A N+ITSTIL+D C K G++ QAL +W M +D+VAYNVLI+G C RNMKLAY
Sbjct: 263 ARVNLITSTILMDGCIKNGDMVQALGIWYAMSQNNTLMDSVAYNVLIHGFCLTRNMKLAY 322
Query: 1060 RCFCDMFKRGILPDVYTYNTIITGLCKEGKFDEACGVHSTMSRMGVPPDEITYKIVIQGL 1239
CDM KRG+LPD++TYNT+I+GLCK GK EAC +H M RMGV PD+I+YKIVIQGL
Sbjct: 323 SYSCDMLKRGLLPDIFTYNTLISGLCKAGKLYEACYIHDVMLRMGVAPDQISYKIVIQGL 382
Query: 1240 CLSGNVNKANEFLLSMLDSLVIPDPLIWNVVIDGYGKCGNVDHASLVRDKMVAAGVTPNI 1419
C G+V KANE L ML+ ++P+ +WN++IDG+ +CG+ +A +RD+M++ GV PN+
Sbjct: 383 CTRGDVLKANEHLHCMLEKSMVPEAHVWNLIIDGFARCGDSANAFSIRDQMLSFGVVPNV 442
Query: 1420 FTYNGLIHAQVKGGNIIDAHFLKQQMLLNGVLPDIVSYNLLIGSACNSGQVRFGIQLHDE 1599
FTYN LIHAQVK GNI+DA+ LK+ ML +G+ PD+++YNLLIG+ACN+G++ +QL+ E
Sbjct: 443 FTYNALIHAQVKTGNIVDAYSLKKMMLCHGLFPDVITYNLLIGTACNAGRISIAVQLYYE 502
Query: 1600 MIRRGYEPDIVTYTEIIRGHCMKGNIEEAIELFTKIRRSGLPVDHVPYQILIKKYCNM 1773
M+R G+EPDI+TYTE+IRG CM+GN++EA ELF K++ +GL VDHVP+Q+LIK N+
Sbjct: 503 MLRSGHEPDIITYTELIRGLCMRGNMKEAKELFAKLQNTGLTVDHVPFQLLIKNTFNL 560
Score = 132 bits (333), Expect = 4e-28
Identities = 84/321 (26%), Positives = 150/321 (46%), Gaps = 2/321 (0%)
Frame = +1
Query: 979 KGIQVDTVAYNVLINGLCWNRNMKLAYRCFCDMFKRGILPDVYTYNTIITGLCKEGKFDE 1158
+ + V + L+ LC + A + +G +PD+ T+N ++ GLC G +
Sbjct: 119 RSVDVSYAGHASLVRDLCLAGKLGAALWLRRKLLHKGFVPDILTHNFLVNGLCNSGDLQK 178
Query: 1159 ACGVHSTMSRMGVPPDEITYKIVIQGLCLSGNVNKANEFLLSMLDSLVIPDPLIWNVVID 1338
A + M +G P+ T+ I+G CL NV+KA SM DS V P+ + N+++
Sbjct: 179 ADCLIKEMLEIGPSPNCATFNTFIKGYCLLNNVDKALYLFSSMSDSGVKPNRVTLNILVH 238
Query: 1339 GYGKCGNVDHASLVRDKMVAAG--VTPNIFTYNGLIHAQVKGGNIIDAHFLKQQMLLNGV 1512
K G ++ A + +++ N+ T L+ +K G+++ A + M N
Sbjct: 239 ALCKRGLLEDAKKLLGELLDDNEKARVNLITSTILMDGCIKNGDMVQALGIWYAMSQNNT 298
Query: 1513 LPDIVSYNLLIGSACNSGQVRFGIQLHDEMIRRGYEPDIVTYTEIIRGHCMKGNIEEAIE 1692
L D V+YN+LI C + ++ +M++RG PDI TY +I G C G + EA
Sbjct: 299 LMDSVAYNVLIHGFCLTRNMKLAYSYSCDMLKRGLLPDIFTYNTLISGLCKAGKLYEACY 358
Query: 1693 LFTKIRRSGLPVDHVPYQILIKKYCNMREPQKAFDLYQEMVEKGLTCRFSTYYALVSELG 1872
+ + R G+ D + Y+I+I+ C + KA + M+EK + + ++
Sbjct: 359 IHDVMLRMGVAPDQISYKIVIQGLCTRGDVLKANEHLHCMLEKSMVPEAHVWNLIIDGFA 418
Query: 1873 RKGFTGEAVQVCNDMDMLGLM 1935
R G + A + + M G++
Sbjct: 419 RCGDSANAFSIRDQMLSFGVV 439
>ref|XP_003541593.1| PREDICTED: pentatricopeptide repeat-containing protein At5g24830-like
[Glycine max]
Length = 577
Score = 550 bits (1417), Expect = e-154
Identities = 270/504 (53%), Positives = 361/504 (71%), Gaps = 4/504 (0%)
Frame = +1
Query: 319 TNHNGNGDPHAAFNALDSVLRSTLERLKKIREGILMVGTGL---WECSPKTSYARHAGVI 489
+N GNG HA FNALD++L+ +LERLK +RE + +V TGL + C K YA I
Sbjct: 70 SNDGGNGR-HAVFNALDTMLKDSLERLKMMRENLCLVKTGLTIGYACESK--YAEDTATI 126
Query: 490 RDLCVEGKIGAALQLRYSMLQNCVVLDVVTHNYLINGLCKMGNLGKANRLVEEMSEMGPS 669
R LC++GK+GAA+ L M Q VV DV THN+++NGLCK+G L KA+ +V EM E GP
Sbjct: 127 RRLCLDGKLGAAVWLWGKMAQKGVVSDVFTHNHIVNGLCKIGLLDKADLVVREMLEFGPR 186
Query: 670 PNCVTYNTLINGYCRLDNVDRALYIFSLMGKNDIKPDRVTCNILTHALCRKGLLEDAKKL 849
PNC TYNTLI GYC ++ VDRALY+FS M I P+RVTC IL HALC KGLL +AK++
Sbjct: 187 PNCATYNTLIKGYCAVNGVDRALYLFSTMTYAGILPNRVTCRILVHALCEKGLLMEAKRM 246
Query: 850 LTEILDENDEAS-SNIITSTILIDSCCKKGEIDQALELWNEMFHKGIQVDTVAYNVLING 1026
L E+L ++DE +++ ST+ +DS K G I QAL LWN+M +VD VAYNVLING
Sbjct: 247 LEEVLKDDDEKDIPDLVISTVFMDSYFKDGAIIQALNLWNQMLQNCTKVDVVAYNVLING 306
Query: 1027 LCWNRNMKLAYRCFCDMFKRGILPDVYTYNTIITGLCKEGKFDEACGVHSTMSRMGVPPD 1206
C ++ M LAY C+MFK+G+LPD +TYN II LCKEGK EAC MS MG+ PD
Sbjct: 307 FCKSQQMNLAYGYACEMFKKGLLPDAFTYNIIIGALCKEGKISEACYTVGVMSNMGIMPD 366
Query: 1207 EITYKIVIQGLCLSGNVNKANEFLLSMLDSLVIPDPLIWNVVIDGYGKCGNVDHASLVRD 1386
+ITY+IVI+GLC +G + +A L ML++L++P PLIWN++ID YG+ ++ +A RD
Sbjct: 367 QITYQIVIRGLCFAGEIVRAKHLLWCMLNNLMVPKPLIWNLIIDLYGRYNDLSNAFFTRD 426
Query: 1387 KMVAAGVTPNIFTYNGLIHAQVKGGNIIDAHFLKQQMLLNGVLPDIVSYNLLIGSACNSG 1566
+M++ GV PN+FTYN LI AQVK GN A LK++M+ + PD+V+YNLLIG+ACN G
Sbjct: 427 QMLSFGVCPNVFTYNALILAQVKSGNFHGACSLKEEMISKCLFPDVVTYNLLIGAACNIG 486
Query: 1567 QVRFGIQLHDEMIRRGYEPDIVTYTEIIRGHCMKGNIEEAIELFTKIRRSGLPVDHVPYQ 1746
++ F + LHD+M++RGYEPD++TYTE++RG C++G ++EA EL+ KI +SGL DHVP Q
Sbjct: 487 RLDFALLLHDQMVQRGYEPDLITYTELVRGFCIRGKMKEAEELYAKILKSGLLNDHVPVQ 546
Query: 1747 ILIKKYCNMREPQKAFDLYQEMVE 1818
IL KYC ++EP AF+ YQ+ +E
Sbjct: 547 ILFNKYCKLKEPVIAFNFYQDWLE 570
Score = 100 bits (248), Expect = 3e-18
Identities = 68/239 (28%), Positives = 114/239 (47%), Gaps = 3/239 (1%)
Frame = +1
Query: 1228 IQGLCLSGNVNKANEFLLSMLDSLVIPDPLIWNVVIDGYGKCGNVDHASLVRDKMVAAGV 1407
I+ LCL G + A M V+ D N +++G K G +D A LV +M+ G
Sbjct: 126 IRRLCLDGKLGAAVWLWGKMAQKGVVSDVFTHNHIVNGLCKIGLLDKADLVVREMLEFGP 185
Query: 1408 TPNIFTYNGLIHAQVKGGNIIDAHFLKQQMLLNGVLPDIVSYNLLIGSACNSGQVRFGIQ 1587
PN TYN LI + A +L M G+LP+ V+ +L+ + C G + +
Sbjct: 186 RPNCATYNTLIKGYCAVNGVDRALYLFSTMTYAGILPNRVTCRILVHALCEKGLLMEAKR 245
Query: 1588 LHDEMIRRGYE---PDIVTYTEIIRGHCMKGNIEEAIELFTKIRRSGLPVDHVPYQILIK 1758
+ +E+++ E PD+V T + + G I +A+ L+ ++ ++ VD V Y +LI
Sbjct: 246 MLEEVLKDDDEKDIPDLVISTVFMDSYFKDGAIIQALNLWNQMLQNCTKVDVVAYNVLIN 305
Query: 1759 KYCNMREPQKAFDLYQEMVEKGLTCRFSTYYALVSELGRKGFTGEAVQVCNDMDMLGLM 1935
+C ++ A+ EM +KGL TY ++ L ++G EA M +G+M
Sbjct: 306 GFCKSQQMNLAYGYACEMFKKGLLPDAFTYNIIIGALCKEGKISEACYTVGVMSNMGIM 364
>dbj|BAC41999.1| unknown protein [Arabidopsis thaliana]
Length = 593
Score = 550 bits (1416), Expect = e-153
Identities = 272/575 (47%), Positives = 399/575 (69%), Gaps = 10/575 (1%)
Frame = +1
Query: 139 ILRIFNNTNIKTLDFIK-GISQIFANILCEKSDIDL----IHRDPMVIEDKPYQIKTQDW 303
+ R+ N ++LDF+ +S++ A I D+++ I R P + + + + T+ W
Sbjct: 17 VFRLLN----QSLDFVSDNVSRLLAPIFTNLRDLEMRLSCIERPPSISGNHSH-LCTEKW 71
Query: 304 VTRKQTNHNGNGDPHAAFNALDSVLRSTLERLKKIREGILMVGTGLWECSPKTSYARHAG 483
+ Q +++ DP A FN LD +L+S+L+RL +RE + + ++ + H+
Sbjct: 72 FS-DQKDYDQKEDPEAIFNVLDYILKSSLDRLASLRESVCQAKSFDYD----DCLSIHSS 126
Query: 484 VIRDLCVEGKIGAALQLRYSMLQNCVVLDVVTHNYLINGLCKMGNLGKANRLVEEMSEMG 663
++RDLC++GK+ AAL LR M+ + V+ ++THN+L+NGLCK G + KA+ LV EM EMG
Sbjct: 127 IMRDLCLQGKLDAALWLRKKMIYSGVIPGLITHNHLLNGLCKAGYIEKADGLVREMREMG 186
Query: 664 PSPNCVTYNTLINGYCRLDNVDRALYIFSLMGKNDIKPDRVTCNILTHALCRKGLL-EDA 840
PSPNCV+YNTLI G C ++NVD+ALY+F+ M K I+P+RVTCNI+ HALC+KG++ +
Sbjct: 187 PSPNCVSYNTLIKGLCSVNNVDKALYLFNTMNKYGIRPNRVTCNIIVHALCQKGVIGNNN 246
Query: 841 KKLLTEILDEND-EASSNIITSTILIDSCCKKGEIDQALELWNEMFHKGIQVDTVAYNVL 1017
KKLL EILD + A +I+ TIL+DSC K G + QALE+W EM K + D+V YNV+
Sbjct: 247 KKLLEEILDSSQANAPLDIVICTILMDSCFKNGNVVQALEVWKEMSQKNVPADSVVYNVI 306
Query: 1018 INGLCWNRNMKLAYRCFCDMFKRGILPDVYTYNTIITGLCKEGKFDEACGVHSTMSRMGV 1197
I GLC + NM AY CDM KRG+ PDV+TYNT+I+ LCKEGKFDEAC +H TM GV
Sbjct: 307 IRGLCSSGNMVAAYGFMCDMVKRGVNPDVFTYNTLISALCKEGKFDEACDLHGTMQNGGV 366
Query: 1198 PPDEITYKIVIQGLCLSGNVNKANEFLLSMLDSLVIPDPLIWNVVIDGYGKCGNVDHASL 1377
PD+I+YK++IQGLC+ G+VN+ANEFLLSML S ++P+ L+WNVVIDGYG+ G+ A
Sbjct: 367 APDQISYKVIIQGLCIHGDVNRANEFLLSMLKSSLLPEVLLWNVVIDGYGRYGDTSSALS 426
Query: 1378 VRDKMVAAGVTPNIFTYNGLIHAQVKGGNIIDAHFLKQQMLLNGVLPDIVSYNLLIGSAC 1557
V + M++ GV PN++T N LIH VKGG +IDA ++K +M + PD +YNLL+G+AC
Sbjct: 427 VLNLMLSYGVKPNVYTNNALIHGYVKGGRLIDAWWVKNEMRSTKIHPDTTTYNLLLGAAC 486
Query: 1558 NSGQVRFGIQLHDEMIRRGYEPDIVTYTEIIRGHCMKGNIEEAIELFTKIRRSGLPVDHV 1737
G +R QL+DEM+RRG +PDI+TYTE++RG C KG +++A L ++I+ +G+ +DHV
Sbjct: 487 TLGHLRLAFQLYDEMLRRGCQPDIITYTELVRGLCWKGRLKKAESLLSRIQATGITIDHV 546
Query: 1738 PYQILIKKYCNMREPQKAFDLYQEMV---EKGLTC 1833
P+ IL KKY ++ P +A+ +Y++ + +G++C
Sbjct: 547 PFLILAKKYTRLQRPGEAYLVYKKWLATRNRGVSC 581
Score = 166 bits (419), Expect = 4e-38
Identities = 115/430 (26%), Positives = 201/430 (46%), Gaps = 5/430 (1%)
Frame = +1
Query: 685 YNTLINGYCRLDNVDRALYIFSLMGKNDIKPDRVTCNILTHALCRKGLLEDAKKLLTEIL 864
+++++ C +D AL++ M + + P +T N L + LC+ G +E A L+ E+
Sbjct: 124 HSSIMRDLCLQGKLDAALWLRKKMIYSGVIPGLITHNHLLNGLCKAGYIEKADGLVREMR 183
Query: 865 DENDEASSNIITSTILIDSCCKKGEIDQALELWNEMFHKGIQVDTVAYNVLINGLCW--- 1035
+ S N ++ LI C +D+AL L+N M GI+ + V N++++ LC
Sbjct: 184 EMGP--SPNCVSYNTLIKGLCSVNNVDKALYLFNTMNKYGIRPNRVTCNIIVHALCQKGV 241
Query: 1036 --NRNMKLAYRCFCDMFKRGILPDVYTYNTIITGLCKEGKFDEACGVHSTMSRMGVPPDE 1209
N N KL D + D+ ++ K G +A V MS+ VP D
Sbjct: 242 IGNNNKKLLEEIL-DSSQANAPLDIVICTILMDSCFKNGNVVQALEVWKEMSQKNVPADS 300
Query: 1210 ITYKIVIQGLCLSGNVNKANEFLLSMLDSLVIPDPLIWNVVIDGYGKCGNVDHASLVRDK 1389
+ Y ++I+GLC SGN+ A F+ M+ V PD +N +I K G D A +
Sbjct: 301 VVYNVIIRGLCSSGNMVAAYGFMCDMVKRGVNPDVFTYNTLISALCKEGKFDEACDLHGT 360
Query: 1390 MVAAGVTPNIFTYNGLIHAQVKGGNIIDAHFLKQQMLLNGVLPDIVSYNLLIGSACNSGQ 1569
M GV P+ +Y +I G++ A+ ML + +LP+++ +N++I G
Sbjct: 361 MQNGGVAPDQISYKVIIQGLCIHGDVNRANEFLLSMLKSSLLPEVLLWNVVIDGYGRYGD 420
Query: 1570 VRFGIQLHDEMIRRGYEPDIVTYTEIIRGHCMKGNIEEAIELFTKIRRSGLPVDHVPYQI 1749
+ + + M+ G +P++ T +I G+ G + +A + ++R + + D Y +
Sbjct: 421 TSSALSVLNLMLSYGVKPNVYTNNALIHGYVKGGRLIDAWWVKNEMRSTKIHPDTTTYNL 480
Query: 1750 LIKKYCNMREPQKAFDLYQEMVEKGLTCRFSTYYALVSELGRKGFTGEAVQVCNDMDMLG 1929
L+ C + + AF LY EM+ +G TY LV L KG +A + + + G
Sbjct: 481 LLGAACTLGHLRLAFQLYDEMLRRGCQPDIITYTELVRGLCWKGRLKKAESLLSRIQATG 540
Query: 1930 LMK*SYVPML 1959
+ +VP L
Sbjct: 541 ITI-DHVPFL 549
>ref|NP_568460.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75154065|sp|Q8L6Y3.1|PP396_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At5g24830 gi|22655280|gb|AAM98230.1| putative protein
[Arabidopsis thaliana] gi|30725398|gb|AAP37721.1|
At5g24830 [Arabidopsis thaliana]
gi|332005984|gb|AED93367.1| pentatricopeptide
repeat-containing protein [Arabidopsis thaliana]
Length = 593
Score = 549 bits (1414), Expect = e-153
Identities = 272/575 (47%), Positives = 398/575 (69%), Gaps = 10/575 (1%)
Frame = +1
Query: 139 ILRIFNNTNIKTLDFIK-GISQIFANILCEKSDIDL----IHRDPMVIEDKPYQIKTQDW 303
+ R+ N ++LDF+ +S++ A I D ++ I R P + + + + T+ W
Sbjct: 17 VFRLLN----QSLDFVSDNVSRLLAPIFTNLRDFEMRLSCIERPPSISGNHSH-LCTEKW 71
Query: 304 VTRKQTNHNGNGDPHAAFNALDSVLRSTLERLKKIREGILMVGTGLWECSPKTSYARHAG 483
+ Q +++ DP A FN LD +L+S+L+RL +RE + + ++ + H+
Sbjct: 72 FS-DQKDYDQKEDPEAIFNVLDYILKSSLDRLASLRESVCQTKSFDYD----DCLSIHSS 126
Query: 484 VIRDLCVEGKIGAALQLRYSMLQNCVVLDVVTHNYLINGLCKMGNLGKANRLVEEMSEMG 663
++RDLC++GK+ AAL LR M+ + V+ ++THN+L+NGLCK G + KA+ LV EM EMG
Sbjct: 127 IMRDLCLQGKLDAALWLRKKMIYSGVIPGLITHNHLLNGLCKAGYIEKADGLVREMREMG 186
Query: 664 PSPNCVTYNTLINGYCRLDNVDRALYIFSLMGKNDIKPDRVTCNILTHALCRKGLL-EDA 840
PSPNCV+YNTLI G C ++NVD+ALY+F+ M K I+P+RVTCNI+ HALC+KG++ +
Sbjct: 187 PSPNCVSYNTLIKGLCSVNNVDKALYLFNTMNKYGIRPNRVTCNIIVHALCQKGVIGNNN 246
Query: 841 KKLLTEILDEND-EASSNIITSTILIDSCCKKGEIDQALELWNEMFHKGIQVDTVAYNVL 1017
KKLL EILD + A +I+ TIL+DSC K G + QALE+W EM K + D+V YNV+
Sbjct: 247 KKLLEEILDSSQANAPLDIVICTILMDSCFKNGNVVQALEVWKEMSQKNVPADSVVYNVI 306
Query: 1018 INGLCWNRNMKLAYRCFCDMFKRGILPDVYTYNTIITGLCKEGKFDEACGVHSTMSRMGV 1197
I GLC + NM AY CDM KRG+ PDV+TYNT+I+ LCKEGKFDEAC +H TM GV
Sbjct: 307 IRGLCSSGNMVAAYGFMCDMVKRGVNPDVFTYNTLISALCKEGKFDEACDLHGTMQNGGV 366
Query: 1198 PPDEITYKIVIQGLCLSGNVNKANEFLLSMLDSLVIPDPLIWNVVIDGYGKCGNVDHASL 1377
PD+I+YK++IQGLC+ G+VN+ANEFLLSML S ++P+ L+WNVVIDGYG+ G+ A
Sbjct: 367 APDQISYKVIIQGLCIHGDVNRANEFLLSMLKSSLLPEVLLWNVVIDGYGRYGDTSSALS 426
Query: 1378 VRDKMVAAGVTPNIFTYNGLIHAQVKGGNIIDAHFLKQQMLLNGVLPDIVSYNLLIGSAC 1557
V + M++ GV PN++T N LIH VKGG +IDA ++K +M + PD +YNLL+G+AC
Sbjct: 427 VLNLMLSYGVKPNVYTNNALIHGYVKGGRLIDAWWVKNEMRSTKIHPDTTTYNLLLGAAC 486
Query: 1558 NSGQVRFGIQLHDEMIRRGYEPDIVTYTEIIRGHCMKGNIEEAIELFTKIRRSGLPVDHV 1737
G +R QL+DEM+RRG +PDI+TYTE++RG C KG +++A L ++I+ +G+ +DHV
Sbjct: 487 TLGHLRLAFQLYDEMLRRGCQPDIITYTELVRGLCWKGRLKKAESLLSRIQATGITIDHV 546
Query: 1738 PYQILIKKYCNMREPQKAFDLYQEMV---EKGLTC 1833
P+ IL KKY ++ P +A+ +Y++ + +G++C
Sbjct: 547 PFLILAKKYTRLQRPGEAYLVYKKWLATRNRGVSC 581
Score = 166 bits (419), Expect = 4e-38
Identities = 115/430 (26%), Positives = 201/430 (46%), Gaps = 5/430 (1%)
Frame = +1
Query: 685 YNTLINGYCRLDNVDRALYIFSLMGKNDIKPDRVTCNILTHALCRKGLLEDAKKLLTEIL 864
+++++ C +D AL++ M + + P +T N L + LC+ G +E A L+ E+
Sbjct: 124 HSSIMRDLCLQGKLDAALWLRKKMIYSGVIPGLITHNHLLNGLCKAGYIEKADGLVREMR 183
Query: 865 DENDEASSNIITSTILIDSCCKKGEIDQALELWNEMFHKGIQVDTVAYNVLINGLCW--- 1035
+ S N ++ LI C +D+AL L+N M GI+ + V N++++ LC
Sbjct: 184 EMGP--SPNCVSYNTLIKGLCSVNNVDKALYLFNTMNKYGIRPNRVTCNIIVHALCQKGV 241
Query: 1036 --NRNMKLAYRCFCDMFKRGILPDVYTYNTIITGLCKEGKFDEACGVHSTMSRMGVPPDE 1209
N N KL D + D+ ++ K G +A V MS+ VP D
Sbjct: 242 IGNNNKKLLEEIL-DSSQANAPLDIVICTILMDSCFKNGNVVQALEVWKEMSQKNVPADS 300
Query: 1210 ITYKIVIQGLCLSGNVNKANEFLLSMLDSLVIPDPLIWNVVIDGYGKCGNVDHASLVRDK 1389
+ Y ++I+GLC SGN+ A F+ M+ V PD +N +I K G D A +
Sbjct: 301 VVYNVIIRGLCSSGNMVAAYGFMCDMVKRGVNPDVFTYNTLISALCKEGKFDEACDLHGT 360
Query: 1390 MVAAGVTPNIFTYNGLIHAQVKGGNIIDAHFLKQQMLLNGVLPDIVSYNLLIGSACNSGQ 1569
M GV P+ +Y +I G++ A+ ML + +LP+++ +N++I G
Sbjct: 361 MQNGGVAPDQISYKVIIQGLCIHGDVNRANEFLLSMLKSSLLPEVLLWNVVIDGYGRYGD 420
Query: 1570 VRFGIQLHDEMIRRGYEPDIVTYTEIIRGHCMKGNIEEAIELFTKIRRSGLPVDHVPYQI 1749
+ + + M+ G +P++ T +I G+ G + +A + ++R + + D Y +
Sbjct: 421 TSSALSVLNLMLSYGVKPNVYTNNALIHGYVKGGRLIDAWWVKNEMRSTKIHPDTTTYNL 480
Query: 1750 LIKKYCNMREPQKAFDLYQEMVEKGLTCRFSTYYALVSELGRKGFTGEAVQVCNDMDMLG 1929
L+ C + + AF LY EM+ +G TY LV L KG +A + + + G
Sbjct: 481 LLGAACTLGHLRLAFQLYDEMLRRGCQPDIITYTELVRGLCWKGRLKKAESLLSRIQATG 540
Query: 1930 LMK*SYVPML 1959
+ +VP L
Sbjct: 541 ITI-DHVPFL 549