BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00006054
         (522 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002298398.1| predicted protein [Populus trichocarpa] gi|1...    94   2e-17
ref|XP_002314076.1| predicted protein [Populus trichocarpa] gi|2...    93   3e-17
ref|XP_002517817.1| Photosystem II 5 kDa protein, chloroplast pr...    92   3e-17
ref|XP_002277909.1| PREDICTED: photosystem II 5 kDa protein, chl...    92   6e-17
gb|AFK48333.1| unknown [Medicago truncatula]                           87   2e-15

>ref|XP_002298398.1| predicted protein [Populus trichocarpa] gi|118487685|gb|ABK95667.1|
           unknown [Populus trichocarpa]
           gi|118488853|gb|ABK96236.1| unknown [Populus trichocarpa
           x Populus deltoides] gi|118488867|gb|ABK96243.1| unknown
           [Populus trichocarpa x Populus deltoides]
           gi|118489821|gb|ABK96710.1| unknown [Populus trichocarpa
           x Populus deltoides] gi|118489889|gb|ABK96742.1| unknown
           [Populus trichocarpa x Populus deltoides]
           gi|222845656|gb|EEE83203.1| predicted protein [Populus
           trichocarpa]
          Length = 105

 Score = 93.6 bits (231), Expect = 2e-17
 Identities = 55/107 (51%), Positives = 69/107 (64%), Gaps = 2/107 (1%)
 Frame = +2

Query: 80  MASITLSAPSFLGNLATSERATTTRGRRTLVVAKAASSTEGLVVD-NNKKESNNGRRDLM 256
           MAS+T++A    G+    +  TT R  R L+VAKA+ +TEG+ V+  NK+ES++GRRDLM
Sbjct: 1   MASMTMTASFLAGSTMAKQPLTTPR--RGLIVAKASRTTEGVNVEMKNKEESSSGRRDLM 58

Query: 257 FXXXXXXXXXXXXXXXXDEPP-RGSPEAKKIYAPICVTMPTARICHK 394
           F                DE P RG+PEAKK YAPICVTMPTARIC K
Sbjct: 59  FAAAAAAAYSIARVAIADEEPERGTPEAKKKYAPICVTMPTARICRK 105


>ref|XP_002314076.1| predicted protein [Populus trichocarpa] gi|222850484|gb|EEE88031.1|
           predicted protein [Populus trichocarpa]
          Length = 105

 Score = 92.8 bits (229), Expect = 3e-17
 Identities = 57/105 (54%), Positives = 72/105 (68%), Gaps = 2/105 (1%)
 Frame = +2

Query: 80  MASITLSAPSFLGNLATSERATTTRGRRTLVVAKAASSTEGLVVD-NNKKESNNGRRDLM 256
           MASIT++A SFL   A +++ +TT  RR L+VAKA+ +TEG+ V+  N++ES+ GRRDLM
Sbjct: 1   MASITMTA-SFLTGSAMAKQPSTTP-RRGLIVAKASRATEGVNVEMKNREESSGGRRDLM 58

Query: 257 FXXXXXXXXXXXXXXXXDEPPR-GSPEAKKIYAPICVTMPTARIC 388
           F                DE PR G+PEAKK YAPICVTMPTARIC
Sbjct: 59  FAAAAAAAYSIARVAIADEEPRRGTPEAKKKYAPICVTMPTARIC 103


>ref|XP_002517817.1| Photosystem II 5 kDa protein, chloroplast precursor, putative
           [Ricinus communis] gi|223543089|gb|EEF44624.1|
           Photosystem II 5 kDa protein, chloroplast precursor,
           putative [Ricinus communis]
          Length = 104

 Score = 92.4 bits (228), Expect = 3e-17
 Identities = 52/106 (49%), Positives = 71/106 (66%), Gaps = 1/106 (0%)
 Frame = +2

Query: 80  MASITLSAPSFLGNLATSERATTTRGRRTLVVAKAASSTEGLVVDNN-KKESNNGRRDLM 256
           MASIT++A SFL + +   ++  T  RRTLVVA AA+  + + ++++ +KES+NGRRDLM
Sbjct: 1   MASITMAA-SFLSSNSLGSQSPVT-ARRTLVVANAAAGGQKVKMNHDSEKESSNGRRDLM 58

Query: 257 FXXXXXXXXXXXXXXXXDEPPRGSPEAKKIYAPICVTMPTARICHK 394
           F                +EP  G+PEAKK Y+P+CVTMPTARICHK
Sbjct: 59  FAAVAAAACSVAGVAAAEEPKAGTPEAKKFYSPVCVTMPTARICHK 104


>ref|XP_002277909.1| PREDICTED: photosystem II 5 kDa protein, chloroplastic [Vitis
           vinifera] gi|147792102|emb|CAN66292.1| hypothetical
           protein VITISV_027031 [Vitis vinifera]
          Length = 109

 Score = 91.7 bits (226), Expect = 6e-17
 Identities = 53/110 (48%), Positives = 68/110 (61%), Gaps = 5/110 (4%)
 Frame = +2

Query: 80  MASITLSAPSFLGNLATSERATTTRGRRTLVVAKAA--SSTEGLVVDNN---KKESNNGR 244
           MAS+T+++ SFLG    ++R+     RR LVV  +A  ++ EG  V  N   KKE+NNGR
Sbjct: 1   MASVTMTS-SFLGGACLADRSPAAAARRRLVVVNSARAAAAEGEKVKLNYDAKKEANNGR 59

Query: 245 RDLMFXXXXXXXXXXXXXXXXDEPPRGSPEAKKIYAPICVTMPTARICHK 394
           R+L+F                 EP  G+PEAKKIYAPICVTMPTA+ICHK
Sbjct: 60  RELVFAAAAAAVCSVAGIAMAGEPKPGTPEAKKIYAPICVTMPTAKICHK 109


>gb|AFK48333.1| unknown [Medicago truncatula]
          Length = 108

 Score = 86.7 bits (213), Expect = 2e-15
 Identities = 53/107 (49%), Positives = 65/107 (60%), Gaps = 4/107 (3%)
 Frame = +2

Query: 80  MASITLSAPSFLGNLATSERATTTRGRRTLVVAKAASSTEG---LVVDNNKKESNNGRRD 250
           MASIT++A  F G+ A + R+     R+ LVVA AA + EG    V  +N+KE  NGRR+
Sbjct: 1   MASITMTAAFFGGSSAIANRSPVATQRK-LVVANAAKAVEGGKMKVNYDNEKEETNGRRN 59

Query: 251 LMFXXXXXXXXXXXXXXXX-DEPPRGSPEAKKIYAPICVTMPTARIC 388
           +MF                 DEP RGSPEAKK YAP+CVTMPTARIC
Sbjct: 60  IMFAAAAAAVCSVAGMALAADEPKRGSPEAKKAYAPVCVTMPTARIC 106