BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00006048
         (2268 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CCA66043.1| hypothetical protein [Beta vulgaris subsp. vulga...    64   1e-07
emb|CCA66039.1| hypothetical protein [Beta vulgaris subsp. vulga...    58   1e-06
gb|AAX95129.1| retrotransposon protein, putative, unclassified [...    60   2e-06
gb|ABA91837.2| retrotransposon protein, putative, unclassified [...    60   2e-06
gb|AAB84339.1| putative Ta11-like non-LTR retroelement protein [...    43   3e-06

>emb|CCA66043.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 438

 Score = 64.3 bits (155), Expect = 1e-07
 Identities = 61/254 (24%), Positives = 111/254 (43%), Gaps = 18/254 (7%)
 Frame = +2

Query: 335  LLLIQELPPNTLPSQVCFNTFTIWFRFENLPYTSRTEDHLLEIMSGLCTMINLSPKLSTP 514
            L+L++E   +  P QVC N    W R +NLP+  R+ D +  ++  L  ++++   +   
Sbjct: 103  LVLLKEADGDEQPDQVCLNHSPFWIRLKNLPFNMRSNDVVKALIGNLGEILDIEEDV--- 159

Query: 515  TNPDEY-RVQTRIQVGHPLPQGKQWKNEIGEPQFIKFVYDNLPPQFCTYCFILGHRSTNC 691
                 Y RV+  + V  PL + ++ +++ G+   + F Y+ L P FC  C I+GH   +C
Sbjct: 160  LGIGRYRRVKVLLDVSKPLRRYRKLRDKSGKDLQVDFAYERL-PFFCLACGIMGHAEKDC 218

Query: 692  AKRIEKEE-------TSLQMLEALQNDNGM--ELLFRSSVENIPVEAASQKLAGNLIPQD 844
               +++++        SL+       +  M  EL F+   +N+  + +     G+L+ ++
Sbjct: 219  QFVLDEDKCEKLGWNLSLKATPRKGRNKEMEEELKFKHCKKNLFDKPSELVKQGSLLIKE 278

Query: 845  FSIL-QTGPAADANSAKFTEFSSYHKKNTVATADA-------QKLTEQIASQVQQNLQQG 1000
              I   T P    NS +F    S +  N +A A A       QK        V   +   
Sbjct: 279  HVISPDTNPIKAINSPQF----SNNGGNLMAAASAVSISTIPQKTCSPAPQLVDPPVCDT 334

Query: 1001 PTSGTISTHYPKIP 1042
            P + T   H   +P
Sbjct: 335  PPTPTFCPHSQIVP 348


>emb|CCA66039.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 488

 Score = 58.2 bits (139), Expect(2) = 1e-06
 Identities = 36/133 (27%), Positives = 64/133 (48%), Gaps = 6/133 (4%)
 Frame = +2

Query: 332 ELLLIQELPPNTLPSQVCFNTFTIWFRFENLPYTSRTEDHLLEIMSGLCTMINLSPKLST 511
           +LL+I E+  +T PS V   T   W R  NLP+  R++  +  I  GL  ++ +      
Sbjct: 103 KLLVIDEILGDTQPSDVVLETSPFWVRIYNLPFNCRSDTEVRAIAGGLGPVLEV------ 156

Query: 512 PTNPDEY------RVQTRIQVGHPLPQGKQWKNEIGEPQFIKFVYDNLPPQFCTYCFILG 673
             + D++      RV+  + +  PL + ++ + + G    I + Y+ L P FC  C +LG
Sbjct: 157 --DIDDFGLERFCRVKVELNIFKPLRRRQRIRRKDGAVASIDYKYERL-PHFCFRCGVLG 213

Query: 674 HRSTNCAKRIEKE 712
           H   +C   + +E
Sbjct: 214 HGDKDCNAEVPEE 226



 Score = 22.7 bits (47), Expect(2) = 1e-06
 Identities = 14/55 (25%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
 Frame = +3

Query: 177 SQSVSVGAL---MTK-WKLYHTLEIIPIEPDRFLLKFKNQSNILRILKVDTWMLD 329
           +++V++ AL   MT+ W L   + +  I+ + F+ +F +  +  +IL    W+ D
Sbjct: 47  TRAVNLDALKRVMTQIWSLNSNMVVRAIDSNSFIFQFFHWKDKAKILDGRPWLFD 101


>gb|AAX95129.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group] gi|62733115|gb|AAX95232.1|
            retrotransposon protein, putative, unclassified [Oryza
            sativa Japonica Group]
          Length = 1324

 Score = 60.5 bits (145), Expect = 2e-06
 Identities = 27/57 (47%), Positives = 38/57 (66%)
 Frame = +3

Query: 2031 QFIMKIISWNCRGCGNPSTVRQIIFLIKKENPDIFFLSETKISAEKMALLNVQFGYP 2201
            ++ MKII+WNCRG GN  TVR ++ L K+++PDI FLS TK+   K+     + G P
Sbjct: 445  KYPMKIIAWNCRGLGNGPTVRGLLNLQKEDDPDILFLSNTKMDTNKLQCFRWKLGMP 501


>gb|ABA91837.2| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1301

 Score = 60.5 bits (145), Expect = 2e-06
 Identities = 27/57 (47%), Positives = 38/57 (66%)
 Frame = +3

Query: 2031 QFIMKIISWNCRGCGNPSTVRQIIFLIKKENPDIFFLSETKISAEKMALLNVQFGYP 2201
            ++ MKII+WNCRG GN  TVR ++ L K+++PDI FLS TK+   K+     + G P
Sbjct: 422  KYPMKIIAWNCRGLGNGPTVRGLLNLQKEDDPDILFLSNTKMDTNKLQCFRWKLGMP 478


>gb|AAB84339.1| putative Ta11-like non-LTR retroelement protein [Arabidopsis
           thaliana]
          Length = 418

 Score = 43.1 bits (100), Expect(2) = 3e-06
 Identities = 27/97 (27%), Positives = 44/97 (45%)
 Frame = +2

Query: 401 IWFRFENLPYTSRTEDHLLEIMSGLCTMINLSPKLSTPTNPDEYRVQTRIQVGHPLPQGK 580
           +W R  N+P    T+D + +I S +  ++ +   L      D  RVQ  I V +PL   K
Sbjct: 122 VWMRLRNIPVNYYTQDTIKKIASCVGKVLKVELDLEKSQAQDYIRVQVIIDVRNPLRNFK 181

Query: 581 QWKNEIGEPQFIKFVYDNLPPQFCTYCFILGHRSTNC 691
           + +   GE   + F Y+ +  + C  C  L H   +C
Sbjct: 182 EIQLPTGEIVSVTFDYERIRKR-CFLCQRLTHEKGDC 217



 Score = 36.6 bits (83), Expect(2) = 3e-06
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = +3

Query: 213 WKLYHTLEIIPIEPDRFLLKFKNQSNILRILKVDTWMLDGSCYSSRNYLQ 362
           W+LY  +  + +  +RF   FK++ ++L ILK   W  D  C     +++
Sbjct: 61  WRLYSRVRGVALSQERFQFFFKSEDDLLEILKTGVWTQDEWCVVMERWIE 110