BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00005635
         (709 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAA33036.1| ribulose 1,5-bisphosphate carboxylase/oxygenase s...   265   9e-69
dbj|BAE46384.1| ribulose-1,5-bisphosphate carboxylase/oxygenase ...   265   9e-69
dbj|BAI53120.1| ribulose-1,5-bisphosphate carboxylase/oxygenase ...   265   9e-69
sp|Q04450.1|RBS2_MESCR RecName: Full=Ribulose bisphosphate carbo...   263   2e-68
emb|CAA31948.1| ribulose bisphosphate carboxylase [Arabidopsis t...   263   3e-68

>gb|AAA33036.1| ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit
           [Mesembryanthemum crystallinum]
          Length = 180

 Score =  265 bits (676), Expect = 9e-69
 Identities = 125/180 (69%), Positives = 145/180 (80%), Gaps = 1/180 (0%)
 Frame = +1

Query: 133 RATPAQASLVAPFNGLKSVSAFPVTRKANDITSITSNGGRVQCMKVXXXXXXXXXXXXXV 312
           R TPAQAS+VAPF GLKSVSAFPVT+K+NDITSI SNGGRVQCM+V              
Sbjct: 13  RTTPAQASMVAPFTGLKSVSAFPVTKKSNDITSIASNGGRVQCMQV-------------- 58

Query: 313 WKPVNNQKFETLSYLPPLGPEALIKEVEYLLRNGWVPCLEFD-LKGFVYRDHGSSPGYYD 489
           W P+  +KFETLSYLPPL  E+L+KEV+YLL NGWVPCLEF+   GFVYR+HG++PGYYD
Sbjct: 59  WPPLGKKKFETLSYLPPLSEESLMKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYD 118

Query: 490 GRYWTMWKLPMFGCNDATQVLKEVEECTKEYPEAFVRIIGFDNIRQTQNVSFIAYKPPSF 669
           GRYWTMWKLPMFGC D +QV+ E+EE  K YPEAF+RIIGFDN+RQ Q +SFIAYKP S+
Sbjct: 119 GRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCISFIAYKPASY 178


>dbj|BAE46384.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
           [Panax ginseng]
          Length = 183

 Score =  265 bits (676), Expect = 9e-69
 Identities = 127/180 (70%), Positives = 145/180 (80%), Gaps = 1/180 (0%)
 Frame = +1

Query: 130 NRATPAQASLVAPFNGLKSVSAFPVTRKANDITSITSNGGRVQCMKVXXXXXXXXXXXXX 309
           +RA PAQAS+VAPF GLKS +AFPVTRK NDITS+ SNGGRVQCMKV             
Sbjct: 15  SRAVPAQASMVAPFTGLKSTAAFPVTRKVNDITSLPSNGGRVQCMKV------------- 61

Query: 310 VWKPVNNQKFETLSYLPPLGPEALIKEVEYLLRNGWVPCLEFDLK-GFVYRDHGSSPGYY 486
            W P+  +KFETLSYLP L  E L KEV+YLLR+GWVPCLEF+L+ GFVYR+H  SPGYY
Sbjct: 62  -WPPLGLKKFETLSYLPQLTQEQLSKEVDYLLRSGWVPCLEFELEHGFVYREHHHSPGYY 120

Query: 487 DGRYWTMWKLPMFGCNDATQVLKEVEECTKEYPEAFVRIIGFDNIRQTQNVSFIAYKPPS 666
           DGRYWTMWKLPMFGC D++QVLKEVEEC KEYP A++RIIGFDN+RQ Q +SFIA+KPPS
Sbjct: 121 DGRYWTMWKLPMFGCTDSSQVLKEVEECKKEYPNAYIRIIGFDNVRQVQCISFIAFKPPS 180


>dbj|BAI53120.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
           [Eucalyptus globulus]
          Length = 179

 Score =  265 bits (676), Expect = 9e-69
 Identities = 128/181 (70%), Positives = 147/181 (81%), Gaps = 2/181 (1%)
 Frame = +1

Query: 133 RATPAQASLVAPFNGLKSVSAFPVTRKAN-DITSITSNGGRVQCMKVXXXXXXXXXXXXX 309
           RATPAQA++VAPF GLKS SAFPVTRK++ DITS++SNGGRVQCM+V             
Sbjct: 13  RATPAQATMVAPFTGLKSASAFPVTRKSSEDITSLSSNGGRVQCMQV------------- 59

Query: 310 VWKPVNNQKFETLSYLPPLGPEALIKEVEYLLRNGWVPCLEFDLK-GFVYRDHGSSPGYY 486
            W P+  +KFETLSYLPPL PE+L KEV+YLLR+GWVPCLEF+L+ GFVYR+H SSPGYY
Sbjct: 60  -WPPIGKKKFETLSYLPPLSPESLAKEVDYLLRSGWVPCLEFELEHGFVYREHHSSPGYY 118

Query: 487 DGRYWTMWKLPMFGCNDATQVLKEVEECTKEYPEAFVRIIGFDNIRQTQNVSFIAYKPPS 666
           DGRYWTMWKLPMFGC D+ QVLKE+EE  K YP AF+RIIGFDN RQ Q +SFIAYKPP 
Sbjct: 119 DGRYWTMWKLPMFGCTDSAQVLKELEEAKKAYPTAFIRIIGFDNKRQVQCISFIAYKPPG 178

Query: 667 F 669
           F
Sbjct: 179 F 179


>sp|Q04450.1|RBS2_MESCR RecName: Full=Ribulose bisphosphate carboxylase small chain 2,
           chloroplastic; Short=RuBisCO small subunit 2; Flags:
           Precursor gi|304444|gb|AAA03694.1|
           ribulose-1,5-bisphosphate carboxylase/oxygenase small
           subunit [Mesembryanthemum crystallinum]
          Length = 180

 Score =  263 bits (673), Expect = 2e-68
 Identities = 125/180 (69%), Positives = 144/180 (80%), Gaps = 1/180 (0%)
 Frame = +1

Query: 133 RATPAQASLVAPFNGLKSVSAFPVTRKANDITSITSNGGRVQCMKVXXXXXXXXXXXXXV 312
           R TPAQAS+VAPF GLKSVSAFPVT+K+NDITSI SNGGRVQCM+V              
Sbjct: 13  RTTPAQASMVAPFTGLKSVSAFPVTKKSNDITSIASNGGRVQCMQV-------------- 58

Query: 313 WKPVNNQKFETLSYLPPLGPEALIKEVEYLLRNGWVPCLEFD-LKGFVYRDHGSSPGYYD 489
           W P+  +KFETLSYLPPL  E+L+KEV+YLL NGWVPCLEF+   GFVYR+HG++PGYYD
Sbjct: 59  WPPLGKKKFETLSYLPPLSEESLMKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYD 118

Query: 490 GRYWTMWKLPMFGCNDATQVLKEVEECTKEYPEAFVRIIGFDNIRQTQNVSFIAYKPPSF 669
           GRYWTMWKLPMFGC D +QV+ E+EE  K YPEAF RIIGFDN+RQ Q +SFIAYKP S+
Sbjct: 119 GRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFTRIIGFDNVRQVQCISFIAYKPASY 178


>emb|CAA31948.1| ribulose bisphosphate carboxylase [Arabidopsis thaliana]
          Length = 182

 Score =  263 bits (672), Expect = 3e-68
 Identities = 125/181 (69%), Positives = 146/181 (80%), Gaps = 2/181 (1%)
 Frame = +1

Query: 136 ATPAQASLVAPFNGLKSVSAFPVTRKAN-DITSITSNGGRVQCMKVXXXXXXXXXXXXXV 312
           A+PAQA++VAPFNGLKS +AFP TRKAN DITSITSNGGRV CM++             V
Sbjct: 13  ASPAQATMVAPFNGLKSSAAFPATRKANNDITSITSNGGRVNCMQMQ------------V 60

Query: 313 WKPVNNQKFETLSYLPPLGPEALIKEVEYLLRNGWVPCLEFDLK-GFVYRDHGSSPGYYD 489
           W P+  +KFETLSYLP L    L KEV+YL+RN W+PC+EF+L+ GFVYR+HG+SPGYYD
Sbjct: 61  WPPIGKKKFETLSYLPDLTDSELAKEVDYLIRNKWIPCVEFELEHGFVYREHGNSPGYYD 120

Query: 490 GRYWTMWKLPMFGCNDATQVLKEVEECTKEYPEAFVRIIGFDNIRQTQNVSFIAYKPPSF 669
           GRYWTMWKLP+FGC D+ QVLKEVEEC KEYP AF+RIIGFDN RQ Q +SF+AYKPPSF
Sbjct: 121 GRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPNAFIRIIGFDNTRQVQCISFVAYKPPSF 180

Query: 670 T 672
           T
Sbjct: 181 T 181