BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00005504
         (1231 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P51132.1|UCRI2_TOBAC RecName: Full=Cytochrome b-c1 complex su...   422   e-116
ref|XP_002297879.1| predicted protein [Populus trichocarpa] gi|2...   419   e-114
ref|XP_002271311.1| PREDICTED: cytochrome b-c1 complex subunit R...   417   e-114
ref|XP_002276466.1| PREDICTED: cytochrome b-c1 complex subunit R...   416   e-114
ref|XP_002512673.1| ubiquinol-cytochrome C reductase iron-sulfur...   414   e-113

>sp|P51132.1|UCRI2_TOBAC RecName: Full=Cytochrome b-c1 complex subunit Rieske-2,
           mitochondrial; AltName: Full=Complex III subunit 5-2;
           AltName: Full=Rieske iron-sulfur protein 2; Short=RISP2;
           AltName: Full=Ubiquinol-cytochrome c reductase
           iron-sulfur subunit 2; Flags: Precursor
           gi|530052|gb|AAA20831.1| Rieske iron-sulfur protein
           [Nicotiana tabacum]
          Length = 272

 Score =  422 bits (1085), Expect = e-116
 Identities = 202/272 (74%), Positives = 237/272 (87%), Gaps = 1/272 (0%)
 Frame = +1

Query: 115 MLRIAGRRALFAS-WRQKQTATASTGLLSRSPINAEEEASSPHDYCSVSAFLSPIRSRGF 291
           MLRIAGRRA   S W  +  A +S+  +S +  ++++++SSP       A +    +RGF
Sbjct: 1   MLRIAGRRASSLSRWPVRSVAPSSSAFISANHFSSDDDSSSPRSISPSLASVFLHHTRGF 60

Query: 292 ASEALAPRPDLGMILDTPPTVAAVKNPTSKIMYDEHNHERFPPGDPSKRAFAYFVLTGGR 471
           +S +++   D+G++ D PPTVAA+KNPTSKI+YDEHNHER+PPGDPSKRAFAYFVLTGGR
Sbjct: 61  SSNSVSHAHDMGLVPDLPPTVAAIKNPTSKIVYDEHNHERYPPGDPSKRAFAYFVLTGGR 120

Query: 472 FVYASLIRLLVLKFVLSMSASKDVLAMASLEVDLTSIEAGSTVTVKWRGKPVFIRRRTEE 651
           FVYASL+RLL+LKFVLSMSASKDVLA+ASLEVDL+SIE G+TVTVKWRGKPVFIRRRTE+
Sbjct: 121 FVYASLVRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTED 180

Query: 652 DINLANSVDLAALRDPQPDSERVKNPEWLIVVGVCTHLGCIPLPNAGDFGGWFCPCHGSH 831
           DINLANSVDL +LRDPQ D+ERVK+PEWL+V+GVCTHLGCIPLPNAGDFGGWFCPCHGSH
Sbjct: 181 DINLANSVDLGSLRDPQQDAERVKSPEWLVVIGVCTHLGCIPLPNAGDFGGWFCPCHGSH 240

Query: 832 YDISGRIRKGPAPYNLEVPTYSFMEENKLLIG 927
           YDISGRIRKGPAPYNLEVPTYSF+EENKLLIG
Sbjct: 241 YDISGRIRKGPAPYNLEVPTYSFLEENKLLIG 272


>ref|XP_002297879.1| predicted protein [Populus trichocarpa] gi|222845137|gb|EEE82684.1|
           predicted protein [Populus trichocarpa]
          Length = 275

 Score =  419 bits (1076), Expect = e-114
 Identities = 212/276 (76%), Positives = 230/276 (83%), Gaps = 5/276 (1%)
 Frame = +1

Query: 115 MLRIAGRRALFASWRQKQTATASTGLLSRSPI----NAEEEASSPHDYCSVSAF-LSPIR 279
           MLR+AGRR     WR  Q+ T S   +SR+      +  + A+S     S   F   P  
Sbjct: 1   MLRVAGRRLSSLPWRSSQSQTTSA-FVSRNTAFVSDDGRDSAASSRPILSPYQFSFPPDL 59

Query: 280 SRGFASEALAPRPDLGMILDTPPTVAAVKNPTSKIMYDEHNHERFPPGDPSKRAFAYFVL 459
            RGF+S AL    D+G+I D PPTVAAVKNPTSKI+YDEHNHER+PPGDPSKRAFAYFVL
Sbjct: 60  IRGFSSGALTSGHDMGIISDLPPTVAAVKNPTSKIVYDEHNHERYPPGDPSKRAFAYFVL 119

Query: 460 TGGRFVYASLIRLLVLKFVLSMSASKDVLAMASLEVDLTSIEAGSTVTVKWRGKPVFIRR 639
           TGGRFVYASLIRLLVLKFVLSMSASKDVLAMASLEVDL+SIE GSTVTVKWRGKPVFIRR
Sbjct: 120 TGGRFVYASLIRLLVLKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRR 179

Query: 640 RTEEDINLANSVDLAALRDPQPDSERVKNPEWLIVVGVCTHLGCIPLPNAGDFGGWFCPC 819
           RTE+DI LANSVDLA+LRDPQ D+ RVKNPEWL+VVGVCTHLGCIPLPNAGDFGGWFCPC
Sbjct: 180 RTEDDIKLANSVDLASLRDPQEDAARVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPC 239

Query: 820 HGSHYDISGRIRKGPAPYNLEVPTYSFMEENKLLIG 927
           HGSHYDISGRIRKGPAPYNLEVPTYSFMEENKLL+G
Sbjct: 240 HGSHYDISGRIRKGPAPYNLEVPTYSFMEENKLLVG 275


>ref|XP_002271311.1| PREDICTED: cytochrome b-c1 complex subunit Rieske-2, mitochondrial
           [Vitis vinifera] gi|296085532|emb|CBI29264.3| unnamed
           protein product [Vitis vinifera]
          Length = 272

 Score =  417 bits (1071), Expect = e-114
 Identities = 209/273 (76%), Positives = 232/273 (84%), Gaps = 2/273 (0%)
 Frame = +1

Query: 115 MLRIAGRRALFASWRQKQTATASTGLLSRSPINAEEEASSPHDYCSVSAFLSPIRS--RG 288
           MLR+AGRR    S     +A AS+ LLSR   +   + SS     S   F S  R   RG
Sbjct: 1   MLRVAGRRLSSLSRWSPSSAPASSALLSRIHSSNGGDGSS-RSISSPHLFNSEFRDLIRG 59

Query: 289 FASEALAPRPDLGMILDTPPTVAAVKNPTSKIMYDEHNHERFPPGDPSKRAFAYFVLTGG 468
           F+SE+LAP  DLGMI D PPTVAA+KNPTSKI+YD+HNHERFPPGDPSKRAFAYFVLTGG
Sbjct: 60  FSSESLAPSHDLGMISDLPPTVAALKNPTSKIVYDDHNHERFPPGDPSKRAFAYFVLTGG 119

Query: 469 RFVYASLIRLLVLKFVLSMSASKDVLAMASLEVDLTSIEAGSTVTVKWRGKPVFIRRRTE 648
           RF+YASLIRLLVLKFVLSMSASKDVLA+AS+EVDL+SIE GSTVTVKWRGKPVFIRRRTE
Sbjct: 120 RFIYASLIRLLVLKFVLSMSASKDVLALASIEVDLSSIEPGSTVTVKWRGKPVFIRRRTE 179

Query: 649 EDINLANSVDLAALRDPQPDSERVKNPEWLIVVGVCTHLGCIPLPNAGDFGGWFCPCHGS 828
           +DI LANSVD+ +LRDPQ D+ RVK+PEWLIV+GVCTHLGCIPLPNAGDFGGWFCPCHGS
Sbjct: 180 DDIKLANSVDVGSLRDPQEDAVRVKDPEWLIVIGVCTHLGCIPLPNAGDFGGWFCPCHGS 239

Query: 829 HYDISGRIRKGPAPYNLEVPTYSFMEENKLLIG 927
           HYD+SGRIRKGPAPYNLEVPTYSF+EENKL+IG
Sbjct: 240 HYDVSGRIRKGPAPYNLEVPTYSFLEENKLMIG 272


>ref|XP_002276466.1| PREDICTED: cytochrome b-c1 complex subunit Rieske, mitochondrial
           [Vitis vinifera]
          Length = 274

 Score =  416 bits (1070), Expect = e-114
 Identities = 209/278 (75%), Positives = 237/278 (85%), Gaps = 7/278 (2%)
 Frame = +1

Query: 115 MLRIAGRR--ALFAS---WRQKQTATASTGLLSRSPINAEEEASSPHDYCSVSAFLSPIR 279
           MLR+A RR  +L +S   WR  Q A+A   +++ +PIN +E+   P  +    +F S   
Sbjct: 1   MLRVASRRLSSLTSSSSLWRPNQVASA---VVTSNPINPDEQPK-PTRFSDSFSFASQFH 56

Query: 280 S--RGFASEALAPRPDLGMILDTPPTVAAVKNPTSKIMYDEHNHERFPPGDPSKRAFAYF 453
              RGFASE+L PR + G+I D PPTVAAVKNPT KI+YDEHNHER+PPGDPSKRAFAYF
Sbjct: 57  LPFRGFASESLTPRNESGVIPDAPPTVAAVKNPTPKIVYDEHNHERYPPGDPSKRAFAYF 116

Query: 454 VLTGGRFVYASLIRLLVLKFVLSMSASKDVLAMASLEVDLTSIEAGSTVTVKWRGKPVFI 633
           VLTGGRFVYASLIRLL+LKFVLSMSASKDVLAMAS+EVDL+ IE+G+TVT+KWRGKPVFI
Sbjct: 117 VLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASVEVDLSGIESGNTVTIKWRGKPVFI 176

Query: 634 RRRTEEDINLANSVDLAALRDPQPDSERVKNPEWLIVVGVCTHLGCIPLPNAGDFGGWFC 813
           RRRTEEDI  ANSVDLA+LRDPQ DSERVKNPEWLIVVGVCTHLGCIPLPNAGDFGGWFC
Sbjct: 177 RRRTEEDIKSANSVDLASLRDPQEDSERVKNPEWLIVVGVCTHLGCIPLPNAGDFGGWFC 236

Query: 814 PCHGSHYDISGRIRKGPAPYNLEVPTYSFMEENKLLIG 927
           PCHGSHYD+SGRIRKGPAPYNLEVPTYSF++ENKLL+G
Sbjct: 237 PCHGSHYDVSGRIRKGPAPYNLEVPTYSFLDENKLLVG 274


>ref|XP_002512673.1| ubiquinol-cytochrome C reductase iron-sulfur subunit, putative
           [Ricinus communis] gi|223548634|gb|EEF50125.1|
           ubiquinol-cytochrome C reductase iron-sulfur subunit,
           putative [Ricinus communis]
          Length = 264

 Score =  414 bits (1064), Expect = e-113
 Identities = 211/271 (77%), Positives = 230/271 (84%)
 Frame = +1

Query: 115 MLRIAGRRALFASWRQKQTATASTGLLSRSPINAEEEASSPHDYCSVSAFLSPIRSRGFA 294
           MLR+AGRR L + WR  Q AT+     +  P  +     SP  +       SP   RGF+
Sbjct: 1   MLRVAGRR-LSSQWRTSQ-ATSVFPHQNVLPHPSFRSILSPSRFS-----FSPDLIRGFS 53

Query: 295 SEALAPRPDLGMILDTPPTVAAVKNPTSKIMYDEHNHERFPPGDPSKRAFAYFVLTGGRF 474
           SEALAP  DLGMI D P TVAAVKNPTSKI+YDEHNHERFPPGDPSKRAFAYFVLTGGRF
Sbjct: 54  SEALAPGHDLGMISDLPATVAAVKNPTSKIVYDEHNHERFPPGDPSKRAFAYFVLTGGRF 113

Query: 475 VYASLIRLLVLKFVLSMSASKDVLAMASLEVDLTSIEAGSTVTVKWRGKPVFIRRRTEED 654
           VYASLIRLLVLK VLSMSASKDVLA+ASLEVDL+SIE G+TVTVKWRGKPVFIRRRTEED
Sbjct: 114 VYASLIRLLVLKLVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEED 173

Query: 655 INLANSVDLAALRDPQPDSERVKNPEWLIVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHY 834
           INLANSVD+A+LRDPQ D+ RVKNPEWL+V+GVCTHLGCIPLPNAGDFGGWFCPCHGSHY
Sbjct: 174 INLANSVDVASLRDPQEDATRVKNPEWLVVIGVCTHLGCIPLPNAGDFGGWFCPCHGSHY 233

Query: 835 DISGRIRKGPAPYNLEVPTYSFMEENKLLIG 927
           DISGRIRKGPAP+NLEVPTYSF+E+NKLLIG
Sbjct: 234 DISGRIRKGPAPFNLEVPTYSFLEDNKLLIG 264