BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00005235
         (2435 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002308636.1| predicted protein [Populus trichocarpa] gi|2...   683   0.0  
ref|XP_002282419.1| PREDICTED: pentatricopeptide repeat-containi...   671   0.0  
ref|XP_002516618.1| pentatricopeptide repeat-containing protein,...   653   0.0  
ref|XP_004136469.1| PREDICTED: pentatricopeptide repeat-containi...   649   0.0  
ref|XP_003588687.1| Pentatricopeptide repeat-containing protein ...   634   e-179

>ref|XP_002308636.1| predicted protein [Populus trichocarpa] gi|222854612|gb|EEE92159.1|
            predicted protein [Populus trichocarpa]
          Length = 607

 Score =  683 bits (1763), Expect = 0.0
 Identities = 355/596 (59%), Positives = 432/596 (72%), Gaps = 2/596 (0%)
 Frame = +3

Query: 6    LNHLTENNLMLTVIFTRRNPTLLFSSRPFSDQSWLSIPGNPLIKWPTQPQHRLXXXXXXX 185
            +N      L+   + TR+ P     S   S +SWL++ GNPLIKWP  P           
Sbjct: 6    INFHKNTTLLYVFLTTRKPPHNRHFSAVSSAESWLAVQGNPLIKWPHNPNLAPSPSADQQ 65

Query: 186  XXXXXXXXXXXXXR-DCVTICNLLRDCNITTGPSLESALNQTGIEPGPSLLQMVFNHFDS 362
                         + D  T+CN+L+D  I  GPSL +AL++TGIEP   L+Q VF+HFDS
Sbjct: 66   NSSPTSNSNPNYHQNDFFTLCNILKDPKIQLGPSLRTALDRTGIEPELGLIQSVFDHFDS 125

Query: 363  SPKPLFTLFQWAEKQPSYCSSAPVFNLMIDHLGKSREFDSAWSLLLERLNDNGVHSMISS 542
            SPK L ++F WAEK+P + SSA +FN M++ LGK+REF SAW LLL+R+  N    ++SS
Sbjct: 126  SPKLLHSVFLWAEKKPGFQSSAALFNSMVNFLGKAREFGSAWCLLLDRIGGNEGGDLVSS 185

Query: 543  NTFAVLIRRYARAGMPFPAIRTFEFAQSLDPNCISVSNSDLFEILLDSLCKEGQVRVASG 722
            +TFA+LIRRY RAGM   AIRTFE+A SLD    S + + LFEILLDSLCKEG VRVA+ 
Sbjct: 186  DTFAILIRRYTRAGMSEAAIRTFEYASSLDLIHNSEAGTSLFEILLDSLCKEGHVRVATD 245

Query: 723  YVIRRKERDPEWVPSVRVYNILLNGWFRSRKLKHAERLWEEMRKENVVPTVVTYGTLVEG 902
            Y  R+ E+DP WVPSVR+YNILLNGWFRSRKLKHAERLW EM+K+NV P+VVTYGTLVEG
Sbjct: 246  YFDRKVEKDPCWVPSVRIYNILLNGWFRSRKLKHAERLWLEMKKKNVKPSVVTYGTLVEG 305

Query: 903  YCRMRRVERAIELVSEMRREGIEPNAVVFNPIVDALGEAGRFKEAMGMLERFSVLESGPT 1082
            Y RMRRVERAIELV EM+REGI+ NA+V+NPI+DAL EAGRFKE +GM+E F + E GPT
Sbjct: 306  YSRMRRVERAIELVDEMKREGIKSNAIVYNPIIDALAEAGRFKEVLGMMEHFFLCEEGPT 365

Query: 1083 VSTYNSLVKGFCKAKDLVGASKILKMMIGRGXXXXXXXXXXXXXXXAKFGKIEEGMNLYT 1262
            +STYNSLVKG+CKA DLVGASKILKMMI R                +K  KIEEGMNLYT
Sbjct: 366  ISTYNSLVKGYCKAGDLVGASKILKMMISREVFPTPTTYNYFFRHFSKCRKIEEGMNLYT 425

Query: 1263 KIIESGYVPDRLTYHLLIKMLCEQERLELVVQVSKEMRARGYDLDLATSTMLVHLLGKLH 1442
            K+IESGY PDRLTYHLL+KMLCE+ERL+L VQ+SKEMRARG D+DLATSTM  HLL K+ 
Sbjct: 426  KMIESGYTPDRLTYHLLLKMLCEEERLDLAVQISKEMRARGCDMDLATSTMFTHLLCKMQ 485

Query: 1443 RFDEACMEFEDMIRRGIIPQYLTYRKLTEDLKKSGMAPMAQKLSALMSSLPHSTNLPGTY 1622
            RF+EA  EFEDM+RRGI+PQYLT+ +L ++ +K G+  +A++L  LMSS+ HS NLP TY
Sbjct: 486  RFEEAFAEFEDMLRRGIVPQYLTFHRLNDEFRKQGLTELARRLCKLMSSVSHSKNLPNTY 545

Query: 1623 REGGDGYREL-RSSIMKKAQAMSDILKTSNDPRELSNIRKSSQNSVTNANELIGDI 1787
                D  R   R SI++KA  MS+ILKT NDPREL   R SSQN  ++AN+LI DI
Sbjct: 546  NVDRDASRHARRKSILQKAGVMSEILKTCNDPRELVKHRSSSQNPESSANQLIEDI 601


>ref|XP_002282419.1| PREDICTED: pentatricopeptide repeat-containing protein At5g11310,
            mitochondrial [Vitis vinifera]
            gi|296081989|emb|CBI20994.3| unnamed protein product
            [Vitis vinifera]
          Length = 597

 Score =  671 bits (1730), Expect = 0.0
 Identities = 355/587 (60%), Positives = 423/587 (72%), Gaps = 1/587 (0%)
 Frame = +3

Query: 30   LMLTVIF-TRRNPTLLFSSRPFSDQSWLSIPGNPLIKWPTQPQHRLXXXXXXXXXXXXXX 206
            L LT +F T  NP L F   PF          + LI  P   +H                
Sbjct: 14   LSLTSLFHTNPNPNLNFQRPPF----------HKLINRPPSYRHWDLPIPTLKQSLNPNP 63

Query: 207  XXXXXXRDCVTICNLLRDCNITTGPSLESALNQTGIEPGPSLLQMVFNHFDSSPKPLFTL 386
                   D  TIC LL D  +++G  LE ALN+TGI+P   LLQ +F+HFD+SPKPLFTL
Sbjct: 64   NPNFSQSDFSTICALLTDPALSSGAPLEDALNRTGIKPCSGLLQAIFSHFDASPKPLFTL 123

Query: 387  FQWAEKQPSYCSSAPVFNLMIDHLGKSREFDSAWSLLLERLNDNGVHSMISSNTFAVLIR 566
            F+WA KQP + SS  +FN MID L KSR FDSAW L+L+R+       ++SSNTFAVLIR
Sbjct: 124  FRWAMKQPGFESSMTLFNSMIDVLAKSRAFDSAWLLVLDRIEGGEEPELVSSNTFAVLIR 183

Query: 567  RYARAGMPFPAIRTFEFAQSLDPNCISVSNSDLFEILLDSLCKEGQVRVASGYVIRRKER 746
            RYARAGM   AIRTFEFA SLD      S   LF+ILLDSLCKEG VRVAS Y  +++  
Sbjct: 184  RYARAGMTLSAIRTFEFAFSLDSIRDRDSEWSLFKILLDSLCKEGHVRVASEYFDQQRGL 243

Query: 747  DPEWVPSVRVYNILLNGWFRSRKLKHAERLWEEMRKENVVPTVVTYGTLVEGYCRMRRVE 926
            DP WVPS+RVYN+LLNGWFRSRKLK AE+LW  M++ENV PTVVTYGTLVEGYCRMRR E
Sbjct: 244  DPSWVPSIRVYNVLLNGWFRSRKLKRAEQLWRTMKRENVKPTVVTYGTLVEGYCRMRRSE 303

Query: 927  RAIELVSEMRREGIEPNAVVFNPIVDALGEAGRFKEAMGMLERFSVLESGPTVSTYNSLV 1106
            +AIELV EMR +GIEPN +V+NPI+D+L EAGRFKEAMGM+ER  V E+GPT+STYNSLV
Sbjct: 304  KAIELVGEMRGKGIEPNVIVYNPIIDSLAEAGRFKEAMGMMERCLVSETGPTISTYNSLV 363

Query: 1107 KGFCKAKDLVGASKILKMMIGRGXXXXXXXXXXXXXXXAKFGKIEEGMNLYTKIIESGYV 1286
            KGFCKA DLVGASK+LKMMI RG               ++ GK EEGMNLYTK+IESG+ 
Sbjct: 364  KGFCKAGDLVGASKVLKMMISRGFDPTLTTYNYFFRYFSRCGKTEEGMNLYTKMIESGHT 423

Query: 1287 PDRLTYHLLIKMLCEQERLELVVQVSKEMRARGYDLDLATSTMLVHLLGKLHRFDEACME 1466
            PDRLTYHLLIKM+CE+ERL+L VQVSKEMRARG DLDLATSTMLVHLL K+HR +EA  E
Sbjct: 424  PDRLTYHLLIKMMCEEERLDLAVQVSKEMRARGCDLDLATSTMLVHLLCKMHRLEEAFAE 483

Query: 1467 FEDMIRRGIIPQYLTYRKLTEDLKKSGMAPMAQKLSALMSSLPHSTNLPGTYREGGDGYR 1646
            FEDMIRRGI+PQYLT+ ++   L+K G+  MA+KL  +M+S+PHS+ LP TY   GD  R
Sbjct: 484  FEDMIRRGIVPQYLTFERMNNALRKRGLTEMARKLCDMMASVPHSSKLPNTYSGDGDASR 543

Query: 1647 ELRSSIMKKAQAMSDILKTSNDPRELSNIRKSSQNSVTNANELIGDI 1787
              ++SI+++A+AMSDILKT NDPREL   R S +N+V  A++LI DI
Sbjct: 544  ARKTSIIQRAEAMSDILKTCNDPRELVKRRSSFENTVLVADQLIEDI 590


>ref|XP_002516618.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223544438|gb|EEF45959.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 577

 Score =  653 bits (1685), Expect = 0.0
 Identities = 336/521 (64%), Positives = 406/521 (77%), Gaps = 1/521 (0%)
 Frame = +3

Query: 228  DCVTICNLLRDCNITTGPSLESALNQTGIEPGPSLLQMVFNHFDSSPKPLFTLFQWAEKQ 407
            D  T+CNLL D N+     LE+AL+QTGI+P  SLL  VF+HF+SSPK L +LF WA+KQ
Sbjct: 60   DFSTLCNLLSDPNLKP---LETALDQTGIKPETSLLNAVFDHFNSSPKLLHSLFVWADKQ 116

Query: 408  PSYCSSAPVFNLMIDHLGKSREFDSAWSLLLERLNDNGVHSMISSNTFAVLIRRYARAGM 587
            P + SS  +FN +I+ LGK +EFDSAW L+L+R        ++SS+TFA+LIRRY RAGM
Sbjct: 117  PEFESSTTLFNSVINALGKMKEFDSAWCLVLDRTG------LVSSDTFAILIRRYTRAGM 170

Query: 588  PFPAIRTFEFAQSLDPNCISVSNSDLFEILLDSLCKEGQVRVASGYVIRRKERDPEWVPS 767
            P  AIRTFE+A SLD  C   +   L EILLDSLCKEG VRVA  Y   RK+ D  W+P 
Sbjct: 171  PQSAIRTFEYAISLDFIC-DYNCDALLEILLDSLCKEGHVRVAKEYFDSRKQLDSCWIPH 229

Query: 768  VRVYNILLNGWFRSRKLKHAERLWEEMRKENVVPTVVTYGTLVEGYCRMRRVERAIELVS 947
            VR+YNI+LNGWFRSRKLKHAERLW EM+K NV P+VVTYGTLVEGYCRMRRVERAIELV 
Sbjct: 230  VRIYNIMLNGWFRSRKLKHAERLWLEMKKNNVSPSVVTYGTLVEGYCRMRRVERAIELVD 289

Query: 948  EMRREGIEPNAVVFNPIVDALGEAGRFKEAMGMLERFSVLESGPTVSTYNSLVKGFCKAK 1127
             MR+EGIEPNA+V+NPI+DAL E GRFKE  GM+E F   ESGPT+STYNSLVKG+CKAK
Sbjct: 290  VMRKEGIEPNALVYNPIIDALAEEGRFKEVSGMMEYFLQSESGPTISTYNSLVKGYCKAK 349

Query: 1128 DLVGASKILKMMIGRGXXXXXXXXXXXXXXXAKFGKIEEGMNLYTKIIESGYVPDRLTYH 1307
            D VGASK+LKMMI RG               +KFG IEEGMNLYTK+IESGY PDRLT+H
Sbjct: 350  DPVGASKVLKMMISRGFVPTPTTYNYFFRHFSKFGMIEEGMNLYTKMIESGYTPDRLTFH 409

Query: 1308 LLIKMLCEQERLELVVQVSKEMRARGYDLDLATSTMLVHLLGKLHRFDEACMEFEDMIRR 1487
            LL+KMLCE+ERL+L VQ+SKEMR+RG D+DLATSTML+HL  ++HRF+EA MEFEDMI++
Sbjct: 410  LLLKMLCEEERLDLAVQISKEMRSRGCDMDLATSTMLIHLFCRMHRFEEAFMEFEDMIQK 469

Query: 1488 GIIPQYLTYRKLTEDLKKSGMAPMAQKLSALMSSLPHSTNLPGTYREGGDGYREL-RSSI 1664
            GI+PQYLT+++L ++L+K GM   A+KLS +MSS+PHSTNLP TY   GD  R   RSSI
Sbjct: 470  GIVPQYLTFQRLNDELRKRGMVERARKLSDMMSSVPHSTNLPNTYSVEGDALRRARRSSI 529

Query: 1665 MKKAQAMSDILKTSNDPRELSNIRKSSQNSVTNANELIGDI 1787
            ++KA+AMS ILKT NDPREL  ++ SSQN +T+A +LI +I
Sbjct: 530  LQKAEAMSKILKTCNDPRELVKLKSSSQNPITSAIQLIENI 570


>ref|XP_004136469.1| PREDICTED: pentatricopeptide repeat-containing protein At5g11310,
            mitochondrial-like [Cucumis sativus]
            gi|449503560|ref|XP_004162063.1| PREDICTED:
            pentatricopeptide repeat-containing protein At5g11310,
            mitochondrial-like [Cucumis sativus]
          Length = 615

 Score =  649 bits (1675), Expect = 0.0
 Identities = 342/585 (58%), Positives = 416/585 (71%), Gaps = 8/585 (1%)
 Frame = +3

Query: 57   RNPTLLFSSRPFSDQSWLSIPGNPLIKWPTQPQH-------RLXXXXXXXXXXXXXXXXX 215
            R   L FSS   S  SWLS PG PL+KWP+ P                            
Sbjct: 26   RFSALQFSS--LSPHSWLSTPGKPLVKWPSLPDQPANPLPSNSAVISNPNSAIDVKFEAS 83

Query: 216  XXXRDCVTICNLLRDCNITTGPSLESALNQTGIEPGPSLLQMVFNHFDSSPKPLFTLFQW 395
                D  TI ++L D ++  G +LE AL++TGI P  SLL+ VF+HFDSSPK L +LF W
Sbjct: 84   YSPNDLSTISSILSDRSVRPGAALEDALDRTGIVPSSSLLEAVFDHFDSSPKFLHSLFLW 143

Query: 396  AEKQPSYCSSAPVFNLMIDHLGKSREFDSAWSLLLERLNDNGVHSMISSNTFAVLIRRYA 575
            A K+  +  SA +FN +I+ L KSREFDSAWSL+  RL       ++S   F +LIRRYA
Sbjct: 144  AAKKSGFRPSAALFNRLINVLAKSREFDSAWSLITSRLRGGEESFLVSVEVFVILIRRYA 203

Query: 576  RAGMPFPAIRTFEFAQSLDPNCISVSNSD-LFEILLDSLCKEGQVRVASGYVIRRKERDP 752
            RAGM  PAIRT+EFA +L+   IS + S+ LFEILLDSLCKEG VRVAS Y  R++E   
Sbjct: 204  RAGMVQPAIRTYEFACNLET--ISGTGSEGLFEILLDSLCKEGHVRVASEYFNRKREMGS 261

Query: 753  EWVPSVRVYNILLNGWFRSRKLKHAERLWEEMRKENVVPTVVTYGTLVEGYCRMRRVERA 932
             + PS+R YNIL+NGWFRSRKLKHA+RLW EM+K  + PTVVTYGTL+EGYCRMR VE A
Sbjct: 262  SFEPSIRAYNILINGWFRSRKLKHAQRLWFEMKKNKISPTVVTYGTLIEGYCRMRSVEIA 321

Query: 933  IELVSEMRREGIEPNAVVFNPIVDALGEAGRFKEAMGMLERFSVLESGPTVSTYNSLVKG 1112
            IELV EMRREGIEPNA+V+NPIVDALGEAGRFKEA+GM+ERF VLE GPT+STYNSLVKG
Sbjct: 322  IELVDEMRREGIEPNAIVYNPIVDALGEAGRFKEALGMMERFMVLEQGPTISTYNSLVKG 381

Query: 1113 FCKAKDLVGASKILKMMIGRGXXXXXXXXXXXXXXXAKFGKIEEGMNLYTKIIESGYVPD 1292
            +CKA DL GASKILKMMIGRG               +K+GKIEE M+LY K+IESGY PD
Sbjct: 382  YCKAGDLSGASKILKMMIGRGFTPTPTTYNYFFRFFSKYGKIEESMSLYNKMIESGYAPD 441

Query: 1293 RLTYHLLIKMLCEQERLELVVQVSKEMRARGYDLDLATSTMLVHLLGKLHRFDEACMEFE 1472
            +LTYHLL+KMLCE+ERL L VQV  EM+ARG+D+DLATSTML+HLL K+H+F+EA  EFE
Sbjct: 442  KLTYHLLLKMLCEEERLNLAVQVCNEMKARGFDMDLATSTMLMHLLCKMHKFEEAFAEFE 501

Query: 1473 DMIRRGIIPQYLTYRKLTEDLKKSGMAPMAQKLSALMSSLPHSTNLPGTYREGGDGYREL 1652
             MI RGI+PQYLT+ +L ++  K G+  MA KL  +MSS+PHS  LP TY +  D  R  
Sbjct: 502  HMIHRGIVPQYLTFCRLHDEFMKRGLTKMASKLQEMMSSVPHSEKLPDTYNQTPDSIRAR 561

Query: 1653 RSSIMKKAQAMSDILKTSNDPRELSNIRKSSQNSVTNANELIGDI 1787
            R+SIM+KA+AMS++LK   DPREL   R  S+++V +AN+LI DI
Sbjct: 562  RTSIMRKAEAMSEMLKVCKDPRELVKRRSPSEDAVFSANKLIDDI 606


>ref|XP_003588687.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
            gi|355477735|gb|AES58938.1| Pentatricopeptide
            repeat-containing protein [Medicago truncatula]
          Length = 587

 Score =  634 bits (1636), Expect = e-179
 Identities = 330/567 (58%), Positives = 412/567 (72%), Gaps = 4/567 (0%)
 Frame = +3

Query: 84   RPFSDQSWLSIPGNPLIKWPTQPQHR--LXXXXXXXXXXXXXXXXXXXXRDCVTICNLLR 257
            RPFS  SWLS PGNPLI WP+ P     +                     D   I  L  
Sbjct: 24   RPFS--SWLSQPGNPLINWPSLPSKPTPIPTLNPNPNSKPESSQPTFSPNDFTLISTLFT 81

Query: 258  DCNITTGPSLESALNQTGIEPGPSLLQMVFNHFDSSPKPLFTLFQWAEKQPSYCSSAPVF 437
            + +I+ G SL + L QTGI+P P LL  VF+HF SSPK L +L+ WA  QP +   + +F
Sbjct: 82   NPSISPGSSLLTNLTQTGIKPTPPLLHAVFDHFASSPKLLHSLYLWALNQPGFKPDSSLF 141

Query: 438  NLMIDHLGKSREFDSAWSLLLERL--NDNGVHSMISSNTFAVLIRRYARAGMPFPAIRTF 611
            + +I+ L K +EFD AWSL+L+R+  +D+    ++S  TFA++IRRYARAGM   AIRTF
Sbjct: 142  DSVINALAKMKEFDDAWSLVLDRIRRDDDDDEKLVSVGTFAIIIRRYARAGMHKAAIRTF 201

Query: 612  EFAQSLDPNCISVSNSDLFEILLDSLCKEGQVRVASGYVIRRKERDPEWVPSVRVYNILL 791
            EFA+       SVS   LFEIL+DSLCKEG  R AS Y++RRKE D  WVPS+RVYNI+L
Sbjct: 202  EFAKDKKSIVDSVSEMSLFEILIDSLCKEGSAREASEYLLRRKETDLGWVPSIRVYNIML 261

Query: 792  NGWFRSRKLKHAERLWEEMRKENVVPTVVTYGTLVEGYCRMRRVERAIELVSEMRREGIE 971
            NGWFR+RKLKHAERLWEEM+ ENV P+VVTYGTLVEGYCRMRRVE+A+E+V EM +EGI+
Sbjct: 262  NGWFRARKLKHAERLWEEMKNENVRPSVVTYGTLVEGYCRMRRVEKALEMVGEMTKEGIK 321

Query: 972  PNAVVFNPIVDALGEAGRFKEAMGMLERFSVLESGPTVSTYNSLVKGFCKAKDLVGASKI 1151
            PNA+V+NPI+DAL EAGRFKEA+GM+ERF VL+ GPT+STYNSLVKGFCKA D+ GASKI
Sbjct: 322  PNAIVYNPIIDALAEAGRFKEALGMMERFHVLQIGPTLSTYNSLVKGFCKAGDIEGASKI 381

Query: 1152 LKMMIGRGXXXXXXXXXXXXXXXAKFGKIEEGMNLYTKIIESGYVPDRLTYHLLIKMLCE 1331
            LK MI RG               ++ GK++EGMNLYTK+IESG+ PDRLTYHL++KMLCE
Sbjct: 382  LKKMISRGFLPIPTTYNYFFRYFSRCGKVDEGMNLYTKMIESGHNPDRLTYHLVLKMLCE 441

Query: 1332 QERLELVVQVSKEMRARGYDLDLATSTMLVHLLGKLHRFDEACMEFEDMIRRGIIPQYLT 1511
            +E+LEL VQVS EMR +GYD+DLATSTML HLL K+H+ +EA  EFEDMIRRGIIPQYLT
Sbjct: 442  EEKLELAVQVSMEMRHKGYDMDLATSTMLTHLLCKMHKLEEAFAEFEDMIRRGIIPQYLT 501

Query: 1512 YRKLTEDLKKSGMAPMAQKLSALMSSLPHSTNLPGTYREGGDGYRELRSSIMKKAQAMSD 1691
            ++KL  +LKK GM  MA+KL  LMSS+P+S  LP TY E  D     R SI++KA+A+S+
Sbjct: 502  FQKLNVELKKQGMNEMARKLCHLMSSVPYSDKLPNTYGEVRDDAHARRKSIIQKAKAVSE 561

Query: 1692 ILKTSNDPRELSNIRKSSQNSVTNANE 1772
            +LK   DP+EL   R SS+++V++ N+
Sbjct: 562  LLK---DPKELDKFRSSSEDAVSSLNK 585