BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00005209
         (1410 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002302114.1| predicted protein [Populus trichocarpa] gi|2...   597   e-168
ref|XP_002275066.1| PREDICTED: uncharacterized protein At3g63140...   595   e-168
ref|XP_002306773.1| predicted protein [Populus trichocarpa] gi|2...   595   e-167
ref|XP_004140080.1| PREDICTED: chloroplast stem-loop binding pro...   585   e-165
gb|AEL98963.1| chloroplast stem-loop binding protein, partial [S...   584   e-164

>ref|XP_002302114.1| predicted protein [Populus trichocarpa] gi|222843840|gb|EEE81387.1|
            predicted protein [Populus trichocarpa]
          Length = 404

 Score =  597 bits (1539), Expect = e-168
 Identities = 287/336 (85%), Positives = 314/336 (93%), Gaps = 1/336 (0%)
 Frame = +2

Query: 239  SFTVNASA-EKKKVLIINTNSGGHAVIGFYFAKELLGSGHDVTVLTVGAESSDKMKKPPF 415
            SFTV ASA EKKKVLI+NTNSGGHAVIGFYFAKELLGSGH+VT+LTVG ESSDKMKKPPF
Sbjct: 67   SFTVKASAAEKKKVLIVNTNSGGHAVIGFYFAKELLGSGHEVTILTVGEESSDKMKKPPF 126

Query: 416  NRFSEIVSAGGGTVWGDPAEVGKVVEGKAFDVVLDNNGKDLDTVRPVVDWAKSAGVKQFL 595
            +RFSEIVSAGG TVWG+PAEVGKVVEG AFDVVLDNNGKDLD VRPVVDWAKSAGVKQFL
Sbjct: 127  SRFSEIVSAGGKTVWGNPAEVGKVVEGAAFDVVLDNNGKDLDAVRPVVDWAKSAGVKQFL 186

Query: 596  YISSAGIYKPSDEPPHVEGDIVKSDASHVAVEKYIAEVFSSWAVFRPQYMIGSGNNKDCE 775
            +ISSAGIYK +DEPPHVEGD+VK+DA HV VEKYIAE+FSSWA+FRPQYMIGSGNNKDCE
Sbjct: 187  FISSAGIYKATDEPPHVEGDVVKADAGHVGVEKYIAEIFSSWAIFRPQYMIGSGNNKDCE 246

Query: 776  EWFFDRIVRDRPVPIPGSGMQLTNISHVRDLSSMLTSAVEDPTAASSKIFNCVSDRAVTL 955
            EWFFDRIVR RPVPIPGSGMQLTNI+H RDLSSMLT AVE+P AAS +IFNCVSDRAVTL
Sbjct: 247  EWFFDRIVRKRPVPIPGSGMQLTNIAHARDLSSMLTLAVENPEAASGRIFNCVSDRAVTL 306

Query: 956  DGFARLCAQAAGHPLKLVHYDPKAIGFDAKKAFPFRNMHFYAEPRTAKEVLGWSSSTNLP 1135
            DG A+LCAQAAG P+++VHYDPK +G DAKKAFPFRNMHFYAEPR AKE+LGW  +TNLP
Sbjct: 307  DGMAKLCAQAAGLPVEIVHYDPKVVGIDAKKAFPFRNMHFYAEPRAAKEILGWQGTTNLP 366

Query: 1136 EDLKERFEEYVKIGRDKKPIKFELDDKILEALKVAV 1243
            EDLKERF++YVKIGRDKKP++FE+DDKILE+LKV V
Sbjct: 367  EDLKERFDDYVKIGRDKKPMQFEIDDKILESLKVPV 402


>ref|XP_002275066.1| PREDICTED: uncharacterized protein At3g63140, chloroplastic [Vitis
            vinifera] gi|147789789|emb|CAN73874.1| hypothetical
            protein VITISV_039540 [Vitis vinifera]
          Length = 397

 Score =  595 bits (1534), Expect = e-168
 Identities = 281/335 (83%), Positives = 311/335 (92%)
 Frame = +2

Query: 245  TVNASAEKKKVLIINTNSGGHAVIGFYFAKELLGSGHDVTVLTVGAESSDKMKKPPFNRF 424
            T+N  A+KKKVLI+NTNSGGHAVIGFYFAK+LLGSGH+VT++TVG E+SDKMKKPPF+RF
Sbjct: 63   TLNVKAQKKKVLIVNTNSGGHAVIGFYFAKQLLGSGHEVTIMTVGEENSDKMKKPPFSRF 122

Query: 425  SEIVSAGGGTVWGDPAEVGKVVEGKAFDVVLDNNGKDLDTVRPVVDWAKSAGVKQFLYIS 604
            SEI SAGG TVWGDPAEVGKVV G AFDVVLDNNGKD+DTVRPVVDWAKS+GV+QFL+IS
Sbjct: 123  SEITSAGGKTVWGDPAEVGKVVAGAAFDVVLDNNGKDIDTVRPVVDWAKSSGVEQFLFIS 182

Query: 605  SAGIYKPSDEPPHVEGDIVKSDASHVAVEKYIAEVFSSWAVFRPQYMIGSGNNKDCEEWF 784
            SAGIYKP+DEPPHVEGDIVK+DA HV VE YI+EVF SWA+FRPQYMIGSGNNKDCEEWF
Sbjct: 183  SAGIYKPTDEPPHVEGDIVKADAGHVGVETYISEVFGSWAIFRPQYMIGSGNNKDCEEWF 242

Query: 785  FDRIVRDRPVPIPGSGMQLTNISHVRDLSSMLTSAVEDPTAASSKIFNCVSDRAVTLDGF 964
            FDRIVRDRPVPIPGSGMQLTNI+HVRDLSSMLT AVE+P AAS  IFNCVSDRAVTLDG 
Sbjct: 243  FDRIVRDRPVPIPGSGMQLTNIAHVRDLSSMLTLAVENPAAASGNIFNCVSDRAVTLDGM 302

Query: 965  ARLCAQAAGHPLKLVHYDPKAIGFDAKKAFPFRNMHFYAEPRTAKEVLGWSSSTNLPEDL 1144
            A+LCAQAAG P+ +VHYDPKA+G DAKKAFPFRNMHFYAEPR AK++LGW   TNLPEDL
Sbjct: 303  AKLCAQAAGRPVNIVHYDPKAVGIDAKKAFPFRNMHFYAEPRAAKDILGWHGITNLPEDL 362

Query: 1145 KERFEEYVKIGRDKKPIKFELDDKILEALKVAVPV 1249
            KERF+EYVKIGRDKKP+KFE+DDKILE+LKV+V V
Sbjct: 363  KERFDEYVKIGRDKKPMKFEIDDKILESLKVSVAV 397


>ref|XP_002306773.1| predicted protein [Populus trichocarpa] gi|222856222|gb|EEE93769.1|
            predicted protein [Populus trichocarpa]
          Length = 377

 Score =  595 bits (1533), Expect = e-167
 Identities = 287/354 (81%), Positives = 319/354 (90%), Gaps = 10/354 (2%)
 Frame = +2

Query: 212  INPRIRSFP---------SFTVNASA-EKKKVLIINTNSGGHAVIGFYFAKELLGSGHDV 361
            I+P   ++P         SF V ASA EKKK+LI+NTNSGGHAVIGFYFAKELLGSGH+V
Sbjct: 22   ISPSFSAYPTCSRRLFASSFPVKASAAEKKKILIVNTNSGGHAVIGFYFAKELLGSGHEV 81

Query: 362  TVLTVGAESSDKMKKPPFNRFSEIVSAGGGTVWGDPAEVGKVVEGKAFDVVLDNNGKDLD 541
            ++LTVG ESSDKMKKPPF+RFSEIV AGG TVWG+PAEVGK VEG  FDVVLDNNGKDLD
Sbjct: 82   SILTVGEESSDKMKKPPFSRFSEIVGAGGKTVWGNPAEVGKAVEGATFDVVLDNNGKDLD 141

Query: 542  TVRPVVDWAKSAGVKQFLYISSAGIYKPSDEPPHVEGDIVKSDASHVAVEKYIAEVFSSW 721
            TVRPVVDWAKSAGVKQFL+ISSAGIYKP+DEPPHVEGD+VK+DA HV VEKYIAE+FSSW
Sbjct: 142  TVRPVVDWAKSAGVKQFLFISSAGIYKPTDEPPHVEGDVVKADAGHVGVEKYIAEIFSSW 201

Query: 722  AVFRPQYMIGSGNNKDCEEWFFDRIVRDRPVPIPGSGMQLTNISHVRDLSSMLTSAVEDP 901
            A+FRPQYMIGSGNNKDCEEWFFDRIVR RPVPIPGSGMQLTNI+HVRDLSSMLT AVE+P
Sbjct: 202  AIFRPQYMIGSGNNKDCEEWFFDRIVRKRPVPIPGSGMQLTNIAHVRDLSSMLTLAVENP 261

Query: 902  TAASSKIFNCVSDRAVTLDGFARLCAQAAGHPLKLVHYDPKAIGFDAKKAFPFRNMHFYA 1081
             AAS  IFNCVSDRAVTLDG A+LCAQAAG P++++HYDPKA+G DAKKAFPFRNMHFYA
Sbjct: 262  EAASGNIFNCVSDRAVTLDGMAKLCAQAAGLPVEIMHYDPKAVGIDAKKAFPFRNMHFYA 321

Query: 1082 EPRTAKEVLGWSSSTNLPEDLKERFEEYVKIGRDKKPIKFELDDKILEALKVAV 1243
            EPR AK++LGW  +TNLPEDLKERF+EYVKIGRDKKP++FE+DDKILE+LKV V
Sbjct: 322  EPRAAKDILGWQGTTNLPEDLKERFDEYVKIGRDKKPMQFEIDDKILESLKVPV 375


>ref|XP_004140080.1| PREDICTED: chloroplast stem-loop binding protein of 41 kDa a,
            chloroplastic-like [Cucumis sativus]
          Length = 409

 Score =  585 bits (1509), Expect = e-165
 Identities = 282/336 (83%), Positives = 307/336 (91%), Gaps = 1/336 (0%)
 Frame = +2

Query: 239  SFTVNASAE-KKKVLIINTNSGGHAVIGFYFAKELLGSGHDVTVLTVGAESSDKMKKPPF 415
            SF+V AS+  KKKVLI+NTNSGGHAVIGFYFAK+LLGSGH+VT+LTVG +SSDKM KPPF
Sbjct: 72   SFSVRASSSPKKKVLIVNTNSGGHAVIGFYFAKQLLGSGHEVTILTVGEQSSDKMNKPPF 131

Query: 416  NRFSEIVSAGGGTVWGDPAEVGKVVEGKAFDVVLDNNGKDLDTVRPVVDWAKSAGVKQFL 595
            NRFSEIVS GG TVWGDPAE+GKVVEG +FDVVLDNNGKD+DTVRPV+DWAKS+GVKQFL
Sbjct: 132  NRFSEIVSGGGKTVWGDPAEIGKVVEGASFDVVLDNNGKDIDTVRPVIDWAKSSGVKQFL 191

Query: 596  YISSAGIYKPSDEPPHVEGDIVKSDASHVAVEKYIAEVFSSWAVFRPQYMIGSGNNKDCE 775
            +ISSAGIYK +DEPPHVEGD VK+DA HV VEKYIAEVFSSWAVFRPQYMIGSGNNKDCE
Sbjct: 192  FISSAGIYKTTDEPPHVEGDPVKADAGHVGVEKYIAEVFSSWAVFRPQYMIGSGNNKDCE 251

Query: 776  EWFFDRIVRDRPVPIPGSGMQLTNISHVRDLSSMLTSAVEDPTAASSKIFNCVSDRAVTL 955
            EWFFDRIVRDRP+PIPGSGMQLTNI+HVRDLSSMLT AVE P  A S IFNCVS RAVTL
Sbjct: 252  EWFFDRIVRDRPIPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSNIFNCVSGRAVTL 311

Query: 956  DGFARLCAQAAGHPLKLVHYDPKAIGFDAKKAFPFRNMHFYAEPRTAKEVLGWSSSTNLP 1135
            DG A+LCAQAAG P+ +VHYDPKA+G DAKKAFPFRNMHFYAEPR A+E+LGW  +TNLP
Sbjct: 312  DGMAKLCAQAAGRPVNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQEILGWEGTTNLP 371

Query: 1136 EDLKERFEEYVKIGRDKKPIKFELDDKILEALKVAV 1243
            EDLKERFEEYVKIGRDKK IKFELDDKILE+L V V
Sbjct: 372  EDLKERFEEYVKIGRDKKAIKFELDDKILESLNVPV 407


>gb|AEL98963.1| chloroplast stem-loop binding protein, partial [Silene latifolia]
          Length = 384

 Score =  584 bits (1505), Expect = e-164
 Identities = 282/333 (84%), Positives = 310/333 (93%), Gaps = 1/333 (0%)
 Frame = +2

Query: 239  SFTVNASA-EKKKVLIINTNSGGHAVIGFYFAKELLGSGHDVTVLTVGAESSDKMKKPPF 415
            SF++NAS   KKKVLI+NT+SGGHAVIGFYFAKELLGSGH VTV TVG ESSDKMKKPPF
Sbjct: 48   SFSINASTGSKKKVLIVNTSSGGHAVIGFYFAKELLGSGHQVTVFTVGDESSDKMKKPPF 107

Query: 416  NRFSEIVSAGGGTVWGDPAEVGKVVEGKAFDVVLDNNGKDLDTVRPVVDWAKSAGVKQFL 595
            NRFSEI SAGG TVWG+PAEVGKVV  ++FDVVLDNNGKDL+TVRPVVDWAKS+GV+QFL
Sbjct: 108  NRFSEITSAGGKTVWGNPAEVGKVVGEESFDVVLDNNGKDLETVRPVVDWAKSSGVEQFL 167

Query: 596  YISSAGIYKPSDEPPHVEGDIVKSDASHVAVEKYIAEVFSSWAVFRPQYMIGSGNNKDCE 775
            +ISSAGIYKP+DEPPHVEGD+VK+DASHVAVE+YI++ FSSWA FRPQYMIGSGNNKDCE
Sbjct: 168  FISSAGIYKPTDEPPHVEGDVVKADASHVAVEEYISQTFSSWASFRPQYMIGSGNNKDCE 227

Query: 776  EWFFDRIVRDRPVPIPGSGMQLTNISHVRDLSSMLTSAVEDPTAASSKIFNCVSDRAVTL 955
            EWFFDRIVRDRP+PIPGSGMQLTNISHV+DLSSMLT AVE+P +AS  IFNCVSDRAVTL
Sbjct: 228  EWFFDRIVRDRPIPIPGSGMQLTNISHVKDLSSMLTLAVENPASASGNIFNCVSDRAVTL 287

Query: 956  DGFARLCAQAAGHPLKLVHYDPKAIGFDAKKAFPFRNMHFYAEPRTAKEVLGWSSSTNLP 1135
            DG A+LCAQAAG P+K+VHYDPKAIG DAKKAFPFRNMHFYAEPR AKE+LGW +ST LP
Sbjct: 288  DGMAKLCAQAAGLPVKIVHYDPKAIGIDAKKAFPFRNMHFYAEPRAAKEILGWKASTYLP 347

Query: 1136 EDLKERFEEYVKIGRDKKPIKFELDDKILEALK 1234
            +DLKER+EEYVKIGRDKK IKFELDDKILEALK
Sbjct: 348  DDLKERYEEYVKIGRDKKDIKFELDDKILEALK 380