BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00005091
         (729 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002311451.1| predicted protein [Populus trichocarpa] gi|2...   189   4e-46
ref|XP_002283616.1| PREDICTED: 30S ribosomal protein 3, chloropl...   187   2e-45
emb|CBI33662.3| unnamed protein product [Vitis vinifera]              187   2e-45
sp|P82412.1|RRP3_SPIOL RecName: Full=30S ribosomal protein 3, ch...   187   2e-45
ref|XP_004145640.1| PREDICTED: 30S ribosomal protein 3, chloropl...   186   4e-45

>ref|XP_002311451.1| predicted protein [Populus trichocarpa] gi|222851271|gb|EEE88818.1|
           predicted protein [Populus trichocarpa]
          Length = 189

 Score =  189 bits (481), Expect = 4e-46
 Identities = 106/187 (56%), Positives = 118/187 (63%), Gaps = 7/187 (3%)
 Frame = -1

Query: 699 MLSMATQPGTNATFT----PISYPPHKLYXXXXXXXXXXXXXXXSLQFSSLQRP---NTR 541
           MLSMA Q G N  FT    P   P  K +               S  F   +R    N R
Sbjct: 1   MLSMAFQSGVNNVFTYYSLPCRTPSCKTFKATISVNPKPNPIRSSTFFDRERRHVSRNQR 60

Query: 540 EVIFSXXXXXXXXXXXXXXXEISTVDSEPIQEIEKLGVVVKPMEKPRLVLKFIWMEKNIG 361
              F+                 +  +S PIQE EK  +VVK +EKPRLVLKF+WMEKNIG
Sbjct: 61  YTTFAVPEALAAETPADAPPSNAAGESIPIQETEKAELVVKQVEKPRLVLKFVWMEKNIG 120

Query: 360 LALDQVIPGHGSIPLSPYYFWPRKDAWEELKLKLESKPWISQKRMIILLNQATDIINLWQ 181
           LALDQVIPGHG++PLSPY+FWPRKDAWEELK  LESKPWISQK+MIILLNQATDIINLWQ
Sbjct: 121 LALDQVIPGHGTVPLSPYFFWPRKDAWEELKATLESKPWISQKKMIILLNQATDIINLWQ 180

Query: 180 QSGGNLT 160
           QSGGNLT
Sbjct: 181 QSGGNLT 187


>ref|XP_002283616.1| PREDICTED: 30S ribosomal protein 3, chloroplastic-like isoform 1
           [Vitis vinifera] gi|359488272|ref|XP_003633730.1|
           PREDICTED: 30S ribosomal protein 3, chloroplastic-like
           isoform 2 [Vitis vinifera]
          Length = 176

 Score =  187 bits (475), Expect = 2e-45
 Identities = 86/95 (90%), Positives = 93/95 (97%)
 Frame = -1

Query: 447 EIEKLGVVVKPMEKPRLVLKFIWMEKNIGLALDQVIPGHGSIPLSPYYFWPRKDAWEELK 268
           ++EKLGVVVKPMEKPRLVLKFIWMEKNIG+ALDQ IPGHG+IPLSPYYFWPRKDAWEE+K
Sbjct: 81  DVEKLGVVVKPMEKPRLVLKFIWMEKNIGVALDQAIPGHGTIPLSPYYFWPRKDAWEEIK 140

Query: 267 LKLESKPWISQKRMIILLNQATDIINLWQQSGGNL 163
           + LESKPWISQK+MIILLNQATDIINLWQQSGGNL
Sbjct: 141 VLLESKPWISQKQMIILLNQATDIINLWQQSGGNL 175


>emb|CBI33662.3| unnamed protein product [Vitis vinifera]
          Length = 175

 Score =  187 bits (475), Expect = 2e-45
 Identities = 86/95 (90%), Positives = 93/95 (97%)
 Frame = -1

Query: 447 EIEKLGVVVKPMEKPRLVLKFIWMEKNIGLALDQVIPGHGSIPLSPYYFWPRKDAWEELK 268
           ++EKLGVVVKPMEKPRLVLKFIWMEKNIG+ALDQ IPGHG+IPLSPYYFWPRKDAWEE+K
Sbjct: 80  DVEKLGVVVKPMEKPRLVLKFIWMEKNIGVALDQAIPGHGTIPLSPYYFWPRKDAWEEIK 139

Query: 267 LKLESKPWISQKRMIILLNQATDIINLWQQSGGNL 163
           + LESKPWISQK+MIILLNQATDIINLWQQSGGNL
Sbjct: 140 VLLESKPWISQKQMIILLNQATDIINLWQQSGGNL 174


>sp|P82412.1|RRP3_SPIOL RecName: Full=30S ribosomal protein 3, chloroplastic; AltName:
           Full=Plastid-specific 30S ribosomal protein 3;
           Short=PSRP-3; Flags: Precursor
           gi|7578871|gb|AAF64163.1|AF239218_1 plastid-specific
           ribosomal protein 3 precursor [Spinacia oleracea]
          Length = 179

 Score =  187 bits (474), Expect = 2e-45
 Identities = 102/181 (56%), Positives = 116/181 (64%), Gaps = 2/181 (1%)
 Frame = -1

Query: 699 MLSMATQPGTNATFTPISY--PPHKLYXXXXXXXXXXXXXXXSLQFSSLQRPNTREVIFS 526
           MLSMA QP  NA   P  Y  P   L                S  FS L++ N   +  +
Sbjct: 1   MLSMAVQPNINAIAKPSIYQSPKLSLKPFKTPAFANPKPFFSSPSFSQLKKKNNWSLFVA 60

Query: 525 XXXXXXXXXXXXXXXEISTVDSEPIQEIEKLGVVVKPMEKPRLVLKFIWMEKNIGLALDQ 346
                              +D + +   EKL V+VKPM+KPRLVLKFIWMEKNIGLALDQ
Sbjct: 61  PETISDVAIMGNEVD----IDDDLLVNKEKLKVLVKPMDKPRLVLKFIWMEKNIGLALDQ 116

Query: 345 VIPGHGSIPLSPYYFWPRKDAWEELKLKLESKPWISQKRMIILLNQATDIINLWQQSGGN 166
            IPGHG++PLSPYYFWPRKDAWEELK+ LE+KPWISQK+MIILLNQATDIINLWQQSGGN
Sbjct: 117 TIPGHGTVPLSPYYFWPRKDAWEELKVLLENKPWISQKQMIILLNQATDIINLWQQSGGN 176

Query: 165 L 163
           L
Sbjct: 177 L 177


>ref|XP_004145640.1| PREDICTED: 30S ribosomal protein 3, chloroplastic-like [Cucumis
           sativus] gi|449484535|ref|XP_004156909.1| PREDICTED: 30S
           ribosomal protein 3, chloroplastic-like [Cucumis
           sativus]
          Length = 192

 Score =  186 bits (472), Expect = 4e-45
 Identities = 88/100 (88%), Positives = 95/100 (95%)
 Frame = -1

Query: 462 SEPIQEIEKLGVVVKPMEKPRLVLKFIWMEKNIGLALDQVIPGHGSIPLSPYYFWPRKDA 283
           S P++E  KLGVVVKPMEKPRLVLKFIWMEKNIG+ALDQ+IPGHG+IPLSPYYFWPRKDA
Sbjct: 94  SSPVKE--KLGVVVKPMEKPRLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDA 151

Query: 282 WEELKLKLESKPWISQKRMIILLNQATDIINLWQQSGGNL 163
           WEELK+ LESKPWISQK+MIILLNQATDIINLWQQ GGNL
Sbjct: 152 WEELKVLLESKPWISQKQMIILLNQATDIINLWQQGGGNL 191