BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00005045
         (1083 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002519035.1| conserved hypothetical protein [Ricinus comm...   522   e-146
ref|XP_004146647.1| PREDICTED: mediator of RNA polymerase II tra...   510   e-142
ref|NP_001190676.1| sensitive to freezing 6 protein [Arabidopsis...   509   e-142
ref|NP_192401.5| sensitive to freezing 6 protein [Arabidopsis th...   509   e-142
ref|XP_002872718.1| hypothetical protein ARALYDRAFT_490126 [Arab...   508   e-141

>ref|XP_002519035.1| conserved hypothetical protein [Ricinus communis]
            gi|223541698|gb|EEF43246.1| conserved hypothetical
            protein [Ricinus communis]
          Length = 1255

 Score =  522 bits (1344), Expect = e-146
 Identities = 248/340 (72%), Positives = 279/340 (82%), Gaps = 1/340 (0%)
 Frame = -3

Query: 1018 SSATVFRIRLKQPPSNLLHKMSVPQLCRRFSSTAWCGKLNAIACASETCARIPSSKAHPP 839
            S ATVF IRLKQP SNL HKMSVP+LCR FS+ AWCGKLNAIACASETCARIPSS A+PP
Sbjct: 68   SPATVFCIRLKQPRSNLQHKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSNANPP 127

Query: 838  FWIPIHIVNPERPTECAVFNVIADSPRDSVQFIEWSPVSCPRALLVANFHGRITIWTQPS 659
            FWIPIHIV PERPTECAVFNVIADSPRDSVQFIEWSP SCPRALL+ANFHGRITIWTQPS
Sbjct: 128  FWIPIHIVIPERPTECAVFNVIADSPRDSVQFIEWSPTSCPRALLIANFHGRITIWTQPS 187

Query: 658  KGPAYLVRDTSCWQCEHEWRQDIAVVTKWLSGISPYRWVXXXXXXXXXXXSTFEEFFFSQ 479
            +GP  +VRD SCWQ EHEWRQDIAVVTKWLSG+SPYRW+           STFEE F SQ
Sbjct: 188  QGPVNMVRDASCWQREHEWRQDIAVVTKWLSGVSPYRWLSSKSSSSTNSKSTFEEKFLSQ 247

Query: 478  RPQTSARWPNFXXXXXXXXXXXVQLHWAQWPLSQSDLAPKWFSTSKGLLGAGPSGVIAAD 299
            + QTSARWPNF           VQLHW+QWP S+++  P+WF TSKGLLGAGPSG++AAD
Sbjct: 248  QSQTSARWPNFLCVCSVFSSGSVQLHWSQWPPSRTNATPEWFCTSKGLLGAGPSGIMAAD 307

Query: 298  AIITEAGTMHVAGVPIVNPSTVVVWEVTPGPGNGLQGTAMINTSDGVPPSLD-PRWTGYA 122
            AI+T++G MHVAGVPIVNPSTVVVWEVTPG G+G Q T   + S+GVPPSL+ P W+G+A
Sbjct: 308  AIVTDSGAMHVAGVPIVNPSTVVVWEVTPGLGHGFQATPKTSISNGVPPSLNPPNWSGFA 367

Query: 121  PLAAHLLSWQEYFGFKGEQGKKHMDLEPSETISLHCSPVS 2
            PLAA+L SWQEY   + +QG+KH D + S T+SLHCSPVS
Sbjct: 368  PLAAYLFSWQEYLISEAKQGRKHTDQDFSNTVSLHCSPVS 407


>ref|XP_004146647.1| PREDICTED: mediator of RNA polymerase II transcription subunit
            16-like [Cucumis sativus]
          Length = 1220

 Score =  510 bits (1314), Expect = e-142
 Identities = 245/338 (72%), Positives = 272/338 (80%), Gaps = 1/338 (0%)
 Frame = -3

Query: 1012 ATVFRIRLKQPPSNLLHKMSVPQLCRRFSSTAWCGKLNAIACASETCARIPSSKAHPPFW 833
            ATVFRI+LKQP SNL HKMSVP+LCR FS+ AWCGKLNAIACASETCARIPSS A+PPFW
Sbjct: 33   ATVFRIKLKQPRSNLQHKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSNANPPFW 92

Query: 832  IPIHIVNPERPTECAVFNVIADSPRDSVQFIEWSPVSCPRALLVANFHGRITIWTQPSKG 653
            IPIHIV PERPTECAVFNVIADSPRDSVQFIEWSP SCPRALL+ANFHGR TIWTQPS+G
Sbjct: 93   IPIHIVIPERPTECAVFNVIADSPRDSVQFIEWSPTSCPRALLIANFHGRTTIWTQPSRG 152

Query: 652  PAYLVRDTSCWQCEHEWRQDIAVVTKWLSGISPYRWVXXXXXXXXXXXSTFEEFFFSQRP 473
            PA LVRD SCWQ EHEWRQDIAVVTKWLSG+S YRW+             FEE F  Q+ 
Sbjct: 153  PANLVRDASCWQLEHEWRQDIAVVTKWLSGLSAYRWL-SSKSNSSNSKPNFEEKFLPQQS 211

Query: 472  QTSARWPNFXXXXXXXXXXXVQLHWAQWPLSQSDLAPKWFSTSKGLLGAGPSGVIAADAI 293
            QTSARWPNF           VQLHW+QWP SQ+   PKWF TSKGLLGAGPSG++AADAI
Sbjct: 212  QTSARWPNFLCVCSVFSSGSVQLHWSQWPPSQNSSPPKWFCTSKGLLGAGPSGIMAADAI 271

Query: 292  ITEAGTMHVAGVPIVNPSTVVVWEVTPGPGNGLQGTAMINTSDGVPPSLD-PRWTGYAPL 116
            IT++G MHVAGVPIVNPSTVVVWEVTPGPGNG Q T    T++GVP  L+ P W+G+APL
Sbjct: 272  ITDSGAMHVAGVPIVNPSTVVVWEVTPGPGNGFQATPKTTTNNGVPAPLNPPNWSGFAPL 331

Query: 115  AAHLLSWQEYFGFKGEQGKKHMDLEPSETISLHCSPVS 2
            AA+L SWQE+   + +QGKK  D + ++TI LHCSPVS
Sbjct: 332  AAYLFSWQEFLLSELKQGKKQTDQDVNDTIPLHCSPVS 369


>ref|NP_001190676.1| sensitive to freezing 6 protein [Arabidopsis thaliana]
            gi|332657042|gb|AEE82442.1| sensitive to freezing 6
            protein [Arabidopsis thaliana]
          Length = 1267

 Score =  509 bits (1311), Expect = e-142
 Identities = 243/340 (71%), Positives = 273/340 (80%), Gaps = 1/340 (0%)
 Frame = -3

Query: 1018 SSATVFRIRLKQPPSNLLHKMSVPQLCRRFSSTAWCGKLNAIACASETCARIPSSKAHPP 839
            S ATVF ++LKQP SNLLHKMSVP+LCR FS+ AWCGKLNAIACASETCARIPSSKA+ P
Sbjct: 83   SPATVFCVKLKQPNSNLLHKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSKANTP 142

Query: 838  FWIPIHIVNPERPTECAVFNVIADSPRDSVQFIEWSPVSCPRALLVANFHGRITIWTQPS 659
            FWIPIHI+ PERPTECAVFNV+ADSPRDSVQFIEWSP SCPRALL+ANFHGRITIWTQP+
Sbjct: 143  FWIPIHILIPERPTECAVFNVVADSPRDSVQFIEWSPTSCPRALLIANFHGRITIWTQPT 202

Query: 658  KGPAYLVRDTSCWQCEHEWRQDIAVVTKWLSGISPYRWVXXXXXXXXXXXSTFEEFFFSQ 479
            +G A LV D + WQCEHEWRQDIAVVTKWL+G SPYRW+           STFEE F SQ
Sbjct: 203  QGSANLVHDATSWQCEHEWRQDIAVVTKWLTGASPYRWLSSKPSSGTNAKSTFEEKFLSQ 262

Query: 478  RPQTSARWPNFXXXXXXXXXXXVQLHWAQWPLSQSDLAPKWFSTSKGLLGAGPSGVIAAD 299
              ++SARWPNF           VQ+HW+QWP +Q   APKWFST KGLLGAGPSG++AAD
Sbjct: 263  SSESSARWPNFLCVCSVFSSGSVQIHWSQWPSNQGSTAPKWFSTKKGLLGAGPSGIMAAD 322

Query: 298  AIITEAGTMHVAGVPIVNPSTVVVWEVTPGPGNGLQGTAMINTSDGVPPSL-DPRWTGYA 122
            AIIT++G MHVAGVPIVNPST+VVWEVTPGPGNGLQ T  I+T   VPPSL    WTG+A
Sbjct: 323  AIITDSGAMHVAGVPIVNPSTIVVWEVTPGPGNGLQATPKISTGSRVPPSLSSSSWTGFA 382

Query: 121  PLAAHLLSWQEYFGFKGEQGKKHMDLEPSETISLHCSPVS 2
            PLAA+L SWQEY   + +QGKK  D + S+ ISL CSPVS
Sbjct: 383  PLAAYLFSWQEYLISEIKQGKKPSDQDSSDAISLSCSPVS 422


>ref|NP_192401.5| sensitive to freezing 6 protein [Arabidopsis thaliana]
            gi|395406812|sp|F4JGZ1.1|MED16_ARATH RecName:
            Full=Mediator of RNA polymerase II transcription subunit
            16; AltName: Full=Protein SENSITIVE TO FREEZING 6
            gi|332657041|gb|AEE82441.1| sensitive to freezing 6
            protein [Arabidopsis thaliana]
          Length = 1278

 Score =  509 bits (1311), Expect = e-142
 Identities = 243/340 (71%), Positives = 273/340 (80%), Gaps = 1/340 (0%)
 Frame = -3

Query: 1018 SSATVFRIRLKQPPSNLLHKMSVPQLCRRFSSTAWCGKLNAIACASETCARIPSSKAHPP 839
            S ATVF ++LKQP SNLLHKMSVP+LCR FS+ AWCGKLNAIACASETCARIPSSKA+ P
Sbjct: 83   SPATVFCVKLKQPNSNLLHKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSKANTP 142

Query: 838  FWIPIHIVNPERPTECAVFNVIADSPRDSVQFIEWSPVSCPRALLVANFHGRITIWTQPS 659
            FWIPIHI+ PERPTECAVFNV+ADSPRDSVQFIEWSP SCPRALL+ANFHGRITIWTQP+
Sbjct: 143  FWIPIHILIPERPTECAVFNVVADSPRDSVQFIEWSPTSCPRALLIANFHGRITIWTQPT 202

Query: 658  KGPAYLVRDTSCWQCEHEWRQDIAVVTKWLSGISPYRWVXXXXXXXXXXXSTFEEFFFSQ 479
            +G A LV D + WQCEHEWRQDIAVVTKWL+G SPYRW+           STFEE F SQ
Sbjct: 203  QGSANLVHDATSWQCEHEWRQDIAVVTKWLTGASPYRWLSSKPSSGTNAKSTFEEKFLSQ 262

Query: 478  RPQTSARWPNFXXXXXXXXXXXVQLHWAQWPLSQSDLAPKWFSTSKGLLGAGPSGVIAAD 299
              ++SARWPNF           VQ+HW+QWP +Q   APKWFST KGLLGAGPSG++AAD
Sbjct: 263  SSESSARWPNFLCVCSVFSSGSVQIHWSQWPSNQGSTAPKWFSTKKGLLGAGPSGIMAAD 322

Query: 298  AIITEAGTMHVAGVPIVNPSTVVVWEVTPGPGNGLQGTAMINTSDGVPPSL-DPRWTGYA 122
            AIIT++G MHVAGVPIVNPST+VVWEVTPGPGNGLQ T  I+T   VPPSL    WTG+A
Sbjct: 323  AIITDSGAMHVAGVPIVNPSTIVVWEVTPGPGNGLQATPKISTGSRVPPSLSSSSWTGFA 382

Query: 121  PLAAHLLSWQEYFGFKGEQGKKHMDLEPSETISLHCSPVS 2
            PLAA+L SWQEY   + +QGKK  D + S+ ISL CSPVS
Sbjct: 383  PLAAYLFSWQEYLISEIKQGKKPSDQDSSDAISLSCSPVS 422


>ref|XP_002872718.1| hypothetical protein ARALYDRAFT_490126 [Arabidopsis lyrata subsp.
            lyrata] gi|297318555|gb|EFH48977.1| hypothetical protein
            ARALYDRAFT_490126 [Arabidopsis lyrata subsp. lyrata]
          Length = 1219

 Score =  508 bits (1308), Expect = e-141
 Identities = 243/340 (71%), Positives = 274/340 (80%), Gaps = 1/340 (0%)
 Frame = -3

Query: 1018 SSATVFRIRLKQPPSNLLHKMSVPQLCRRFSSTAWCGKLNAIACASETCARIPSSKAHPP 839
            S ATVF ++LKQP S+LLHKMSVP+LCR FS+ AWCGKLNAIACASETCARIPSSKA+ P
Sbjct: 71   SPATVFCVKLKQPNSDLLHKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSKANTP 130

Query: 838  FWIPIHIVNPERPTECAVFNVIADSPRDSVQFIEWSPVSCPRALLVANFHGRITIWTQPS 659
            FWIPIHI+ PERPTECAVFNV+ADSPRDSVQFIEWSP+SCPRALL+ANFHGRITIWTQP+
Sbjct: 131  FWIPIHILIPERPTECAVFNVVADSPRDSVQFIEWSPISCPRALLIANFHGRITIWTQPT 190

Query: 658  KGPAYLVRDTSCWQCEHEWRQDIAVVTKWLSGISPYRWVXXXXXXXXXXXSTFEEFFFSQ 479
            +G A LV D + WQCEHEWRQDIAVVTKWL+G SPYRW+           STFEE F SQ
Sbjct: 191  QGSANLVHDATSWQCEHEWRQDIAVVTKWLAGASPYRWLSSKPSSGTNAKSTFEEKFLSQ 250

Query: 478  RPQTSARWPNFXXXXXXXXXXXVQLHWAQWPLSQSDLAPKWFSTSKGLLGAGPSGVIAAD 299
              ++SARWPNF           VQLHW+QWP +Q   APKWFST KGLLGAGPSG++AAD
Sbjct: 251  SSESSARWPNFLCVCSVFSSGSVQLHWSQWPSNQGCTAPKWFSTKKGLLGAGPSGIMAAD 310

Query: 298  AIITEAGTMHVAGVPIVNPSTVVVWEVTPGPGNGLQGTAMINTSDGVPPSL-DPRWTGYA 122
            AIIT++G MHVAGVPIVNPST+VVWEVTPGPGNGLQ T  I+T   VPPSL    WTG+A
Sbjct: 311  AIITDSGAMHVAGVPIVNPSTIVVWEVTPGPGNGLQATPKISTGSRVPPSLSSSSWTGFA 370

Query: 121  PLAAHLLSWQEYFGFKGEQGKKHMDLEPSETISLHCSPVS 2
            PLAA+L SWQEY   + +QGKK  D + S+ ISL CSPVS
Sbjct: 371  PLAAYLFSWQEYLISEIKQGKKPTDQDSSDAISLSCSPVS 410