BLASTX nr result
ID: Cimicifuga21_contig00005041
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cimicifuga21_contig00005041
(1893 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002279575.1| PREDICTED: ribosome biogenesis protein WDR12... 507 e-141
ref|XP_003524849.1| PREDICTED: ribosome biogenesis protein WDR12... 492 e-136
ref|XP_002324109.1| predicted protein [Populus trichocarpa] gi|2... 488 e-135
emb|CAN70824.1| hypothetical protein VITISV_042345 [Vitis vinifera] 485 e-134
ref|XP_003554839.1| PREDICTED: ribosome biogenesis protein WDR12... 477 e-132
>ref|XP_002279575.1| PREDICTED: ribosome biogenesis protein WDR12 homolog [Vitis vinifera]
gi|296082215|emb|CBI21220.3| unnamed protein product
[Vitis vinifera]
Length = 438
Score = 507 bits (1306), Expect = e-141
Identities = 233/317 (73%), Positives = 261/317 (82%)
Frame = -3
Query: 1405 LHDDWVSAVCGANPGFILTGCYDSLGRIWKADGFCTHILEGHKDAITSVSVVNPKGVEDN 1226
LHDDWVSAV G+NPGFILTGCYD LGR+WKA G CTHILEGH DAITSV ++PKG+E
Sbjct: 110 LHDDWVSAVDGSNPGFILTGCYDGLGRLWKAAGSCTHILEGHNDAITSVKFIDPKGLESV 169
Query: 1225 TSLHIATASKDRTLRLWKFDTEEPFNHPRKITAYKVLQGHTASVQSVVSHPSGDMVCSGS 1046
+ +ATASKDRTLRLWKFD E + P KI A+K+L GH ASVQSV P+G+MVCSGS
Sbjct: 170 NNSVVATASKDRTLRLWKFDAGERHDLPLKIRAFKILHGHNASVQSVAVQPTGNMVCSGS 229
Query: 1045 WDSTINFWRTNESDAEDDSISTKKRKTGTDAKESQLEGKPDLTFAGHTQCVSSVVWPEHE 866
WD TIN WRT+E D E D +S KKRK +A+ESQ EG+ T GHTQCVSSV+WP+HE
Sbjct: 230 WDCTINLWRTDEFDVEGDLVSVKKRKVNNEAEESQAEGEAVSTIVGHTQCVSSVIWPQHE 289
Query: 865 TIYSASWDHSIRRWDIEAGKDSLNVFTGKVLNCLDVGGEGSSLIAAGGSDPILRIWDPRN 686
TIYSASWDHS+RRWD+E GKDS N+F GK LNCLDVGGE S+LIAAGGSD LRIWDPR
Sbjct: 290 TIYSASWDHSVRRWDVETGKDSWNLFCGKALNCLDVGGESSALIAAGGSDTTLRIWDPRK 349
Query: 685 PGTLAPVFQFSSHTSWITACKWHGKSSVHILSASYDGKVMLWDLRTAWPVAVIDSHKDKV 506
PGTL PVFQFSSHTSWI+ACKWH KS H+LSASYDGKVMLWDLRTAWP+AVIDSH +KV
Sbjct: 350 PGTLTPVFQFSSHTSWISACKWHNKSWFHLLSASYDGKVMLWDLRTAWPLAVIDSHNNKV 409
Query: 505 MCADWWKDDCVVSGGQD 455
+CADWWK D VVSGG D
Sbjct: 410 LCADWWKGDSVVSGGAD 426
Score = 136 bits (343), Expect = 2e-29
Identities = 70/88 (79%), Positives = 78/88 (88%), Gaps = 1/88 (1%)
Frame = -2
Query: 1805 MELSGNVE-MSRQVQVRFVTKLQSPMKVLPTAIAIPSNLTRMGLSTIVNNLLKAGDSDWE 1629
ME+ G+VE SR+VQVRF TKLQSP K PT+IAIPSNLTRMGLS IVNNLLK+G+ DW+
Sbjct: 1 MEIDGDVEETSRRVQVRFTTKLQSPFKTPPTSIAIPSNLTRMGLSAIVNNLLKSGNPDWK 60
Query: 1628 PFPFDFLIDGELVRMSLEQFLLAKGISA 1545
P PFDFLIDGELVRMSLEQFL+AKGISA
Sbjct: 61 PEPFDFLIDGELVRMSLEQFLIAKGISA 88
>ref|XP_003524849.1| PREDICTED: ribosome biogenesis protein WDR12 homolog [Glycine max]
Length = 427
Score = 492 bits (1266), Expect = e-136
Identities = 222/317 (70%), Positives = 263/317 (82%)
Frame = -3
Query: 1405 LHDDWVSAVCGANPGFILTGCYDSLGRIWKADGFCTHILEGHKDAITSVSVVNPKGVEDN 1226
LHDDWVSAV G++ F LTGCYD LGR+WK G CTHIL+GH DA+TSVS++NPKG E
Sbjct: 103 LHDDWVSAVDGSSSRFFLTGCYDGLGRVWKGAGLCTHILDGHSDAVTSVSIINPKGAETV 162
Query: 1225 TSLHIATASKDRTLRLWKFDTEEPFNHPRKITAYKVLQGHTASVQSVVSHPSGDMVCSGS 1046
T +ATASKDRTLRLWK +TE+P NHP ++ AYK+L+GH +SVQSV SG+MVCSGS
Sbjct: 163 T---VATASKDRTLRLWKLNTEDPVNHPMRVRAYKILRGHKSSVQSVAVQTSGEMVCSGS 219
Query: 1045 WDSTINFWRTNESDAEDDSISTKKRKTGTDAKESQLEGKPDLTFAGHTQCVSSVVWPEHE 866
WD TIN W+TN+ +AEDD +S KKRK G +ESQLEG+ T GHTQCVSSVVWP+ E
Sbjct: 220 WDCTINLWQTNDFNAEDDQVS-KKRKVGGQVEESQLEGEAFTTLVGHTQCVSSVVWPQRE 278
Query: 865 TIYSASWDHSIRRWDIEAGKDSLNVFTGKVLNCLDVGGEGSSLIAAGGSDPILRIWDPRN 686
IYSASWDHSIR+WD+E GK+ ++F GKVLNCLD+GGEGS+LIAAGGSDP+LRIWDPR
Sbjct: 279 LIYSASWDHSIRKWDVEIGKNLTDIFCGKVLNCLDIGGEGSALIAAGGSDPVLRIWDPRK 338
Query: 685 PGTLAPVFQFSSHTSWITACKWHGKSSVHILSASYDGKVMLWDLRTAWPVAVIDSHKDKV 506
PGT APVFQF+SHTSW++ACKWH +S H+LSASYDGKVMLWDLRTAWP++VI+SH DKV
Sbjct: 339 PGTSAPVFQFASHTSWVSACKWHDQSWFHLLSASYDGKVMLWDLRTAWPLSVIESHSDKV 398
Query: 505 MCADWWKDDCVVSGGQD 455
+ ADWWK D V+SGG D
Sbjct: 399 LSADWWKSDSVISGGAD 415
Score = 103 bits (256), Expect = 2e-19
Identities = 53/78 (67%), Positives = 65/78 (83%)
Frame = -2
Query: 1778 SRQVQVRFVTKLQSPMKVLPTAIAIPSNLTRMGLSTIVNNLLKAGDSDWEPFPFDFLIDG 1599
+R++QVRFVTKL P K+ TAIAIP++LTR GLS++VN LL++ D+ P PFDFLIDG
Sbjct: 7 ARRIQVRFVTKLSEPYKIPTTAIAIPADLTRFGLSSLVNALLESNDA---PEPFDFLIDG 63
Query: 1598 ELVRMSLEQFLLAKGISA 1545
E +RMSLEQFLLAKGISA
Sbjct: 64 EFIRMSLEQFLLAKGISA 81
>ref|XP_002324109.1| predicted protein [Populus trichocarpa] gi|222867111|gb|EEF04242.1|
predicted protein [Populus trichocarpa]
Length = 433
Score = 488 bits (1255), Expect = e-135
Identities = 226/317 (71%), Positives = 257/317 (81%)
Frame = -3
Query: 1405 LHDDWVSAVCGANPGFILTGCYDSLGRIWKADGFCTHILEGHKDAITSVSVVNPKGVEDN 1226
LHDDWVSAV G+ P FILTGCYD+LGR+WKA G CTHILEGH AITSVSVVN +G +
Sbjct: 108 LHDDWVSAVDGSCPRFILTGCYDNLGRVWKAAGECTHILEGHGGAITSVSVVNSEGTD-- 165
Query: 1225 TSLHIATASKDRTLRLWKFDTEEPFNHPRKITAYKVLQGHTASVQSVVSHPSGDMVCSGS 1046
S+ +ATASKD TLRLWKFDTEE + P KI A+K+L+GH A VQSV + SG M+CSGS
Sbjct: 166 -SVTVATASKDETLRLWKFDTEEHLDQPSKIRAFKILRGHNAPVQSVAAEASGSMICSGS 224
Query: 1045 WDSTINFWRTNESDAEDDSISTKKRKTGTDAKESQLEGKPDLTFAGHTQCVSSVVWPEHE 866
WD TIN WRTNESD E D +S KKRK A ESQLEG T GHTQCVSSV WPE
Sbjct: 225 WDCTINLWRTNESDTESDLVSIKKRKVKNKAGESQLEGGALSTLVGHTQCVSSVYWPEPN 284
Query: 865 TIYSASWDHSIRRWDIEAGKDSLNVFTGKVLNCLDVGGEGSSLIAAGGSDPILRIWDPRN 686
TIYSASWDHS+RRWD+E GKD N+F GK L+CL VGGEGS+LIAAGGSDPILR+WDPR
Sbjct: 285 TIYSASWDHSVRRWDVEMGKDLSNIFCGKALHCLHVGGEGSALIAAGGSDPILRVWDPRK 344
Query: 685 PGTLAPVFQFSSHTSWITACKWHGKSSVHILSASYDGKVMLWDLRTAWPVAVIDSHKDKV 506
PGT AP++QFSSH SWI+ACKWH +S H+LSASYDGK+MLWDLRTAWP+A+IDSH+DKV
Sbjct: 345 PGTSAPIYQFSSHNSWISACKWHSESLFHLLSASYDGKLMLWDLRTAWPLAIIDSHEDKV 404
Query: 505 MCADWWKDDCVVSGGQD 455
+CADWWK D V+SGG D
Sbjct: 405 LCADWWKGDSVISGGVD 421
Score = 123 bits (309), Expect = 1e-25
Identities = 63/87 (72%), Positives = 75/87 (86%)
Frame = -2
Query: 1805 MELSGNVEMSRQVQVRFVTKLQSPMKVLPTAIAIPSNLTRMGLSTIVNNLLKAGDSDWEP 1626
M++ +VE R+VQVRF+TKL+ P KV T+IAIP+NLTR+GLSTIVN+LLKAGD +WE
Sbjct: 1 MDMDSDVE-ERRVQVRFITKLKPPFKVPNTSIAIPANLTRLGLSTIVNSLLKAGDDEWES 59
Query: 1625 FPFDFLIDGELVRMSLEQFLLAKGISA 1545
PFDFLIDGELVR+ LEQFLLAKGISA
Sbjct: 60 QPFDFLIDGELVRLPLEQFLLAKGISA 86
>emb|CAN70824.1| hypothetical protein VITISV_042345 [Vitis vinifera]
Length = 427
Score = 485 bits (1249), Expect = e-134
Identities = 229/317 (72%), Positives = 253/317 (79%)
Frame = -3
Query: 1405 LHDDWVSAVCGANPGFILTGCYDSLGRIWKADGFCTHILEGHKDAITSVSVVNPKGVEDN 1226
LHDDWVSAV G+NPGFILTGCYD LGR+WKA G CTHILEGH DAITSV ++PK V
Sbjct: 110 LHDDWVSAVDGSNPGFILTGCYDGLGRLWKAAGSCTHILEGHNDAITSVKFIDPKVV--- 166
Query: 1225 TSLHIATASKDRTLRLWKFDTEEPFNHPRKITAYKVLQGHTASVQSVVSHPSGDMVCSGS 1046
ATASKDRTLRLWK P KI A+K+L GH ASVQSV P+G+MVCSGS
Sbjct: 167 -----ATASKDRTLRLWKGSA---MIFPLKIRAFKILHGHNASVQSVAVQPTGNMVCSGS 218
Query: 1045 WDSTINFWRTNESDAEDDSISTKKRKTGTDAKESQLEGKPDLTFAGHTQCVSSVVWPEHE 866
WD TIN WRT+E D E D +S KKRK +A+ESQ EG+ T GHTQCVSSV+WP+HE
Sbjct: 219 WDCTINLWRTDEFDVEGDLVSVKKRKVNNEAEESQAEGEAVSTIVGHTQCVSSVIWPQHE 278
Query: 865 TIYSASWDHSIRRWDIEAGKDSLNVFTGKVLNCLDVGGEGSSLIAAGGSDPILRIWDPRN 686
TIYSASWDHS+RRWD+E GKDS N+F GK LNCLDVGGE S+LIAAGGSD LRIWDPR
Sbjct: 279 TIYSASWDHSVRRWDVETGKDSWNLFCGKALNCLDVGGESSALIAAGGSDTTLRIWDPRK 338
Query: 685 PGTLAPVFQFSSHTSWITACKWHGKSSVHILSASYDGKVMLWDLRTAWPVAVIDSHKDKV 506
PGTL PVFQFSSHTSWI+ACKWH KS H+LSASYDGKVMLWDLRTAWP+AVIDSH +KV
Sbjct: 339 PGTLTPVFQFSSHTSWISACKWHNKSWFHLLSASYDGKVMLWDLRTAWPLAVIDSHNNKV 398
Query: 505 MCADWWKDDCVVSGGQD 455
+CADWWK D VVSGG D
Sbjct: 399 LCADWWKGDSVVSGGAD 415
Score = 136 bits (343), Expect = 2e-29
Identities = 70/88 (79%), Positives = 78/88 (88%), Gaps = 1/88 (1%)
Frame = -2
Query: 1805 MELSGNVE-MSRQVQVRFVTKLQSPMKVLPTAIAIPSNLTRMGLSTIVNNLLKAGDSDWE 1629
ME+ G+VE SR+VQVRF TKLQSP K PT+IAIPSNLTRMGLS IVNNLLK+G+ DW+
Sbjct: 1 MEIDGDVEETSRRVQVRFTTKLQSPFKTPPTSIAIPSNLTRMGLSAIVNNLLKSGNPDWK 60
Query: 1628 PFPFDFLIDGELVRMSLEQFLLAKGISA 1545
P PFDFLIDGELVRMSLEQFL+AKGISA
Sbjct: 61 PEPFDFLIDGELVRMSLEQFLIAKGISA 88
>ref|XP_003554839.1| PREDICTED: ribosome biogenesis protein WDR12 homolog [Glycine max]
Length = 435
Score = 477 bits (1228), Expect = e-132
Identities = 216/317 (68%), Positives = 259/317 (81%)
Frame = -3
Query: 1405 LHDDWVSAVCGANPGFILTGCYDSLGRIWKADGFCTHILEGHKDAITSVSVVNPKGVEDN 1226
LHDDWVSAV G++ F LTGCYD LGR+WK G CTHILEGH DA+TSVS++NPKG E
Sbjct: 111 LHDDWVSAVDGSSSRFFLTGCYDGLGRVWKGAGLCTHILEGHSDAVTSVSIINPKGEETI 170
Query: 1225 TSLHIATASKDRTLRLWKFDTEEPFNHPRKITAYKVLQGHTASVQSVVSHPSGDMVCSGS 1046
T +ATASKDRTLRLWK + E P N+P ++ AYK+ +GH +SV V + SG+MVCS S
Sbjct: 171 T---VATASKDRTLRLWKLNAEGPVNNPMRVRAYKIFRGHKSSVNCVAAQTSGEMVCSAS 227
Query: 1045 WDSTINFWRTNESDAEDDSISTKKRKTGTDAKESQLEGKPDLTFAGHTQCVSSVVWPEHE 866
WD TIN W+TN+ +AEDD +S KKRK G +ESQLEG+ T GHTQCVS+VVWP+ E
Sbjct: 228 WDCTINLWQTNDFNAEDDLVS-KKRKIGAQVEESQLEGEAFTTLVGHTQCVSAVVWPQQE 286
Query: 865 TIYSASWDHSIRRWDIEAGKDSLNVFTGKVLNCLDVGGEGSSLIAAGGSDPILRIWDPRN 686
+IYSASWDHSIR+WD+E GK+ ++F GKVLNCLD+GGEGS+LIAAGGSDP++RIWDPR
Sbjct: 287 SIYSASWDHSIRKWDVETGKNLTDLFCGKVLNCLDIGGEGSALIAAGGSDPVIRIWDPRK 346
Query: 685 PGTLAPVFQFSSHTSWITACKWHGKSSVHILSASYDGKVMLWDLRTAWPVAVIDSHKDKV 506
PGT APVFQFSSHTSWI+ACKWH +S H+LSASYDGKVMLWDLRTAWP++VI+SH DKV
Sbjct: 347 PGTSAPVFQFSSHTSWISACKWHDQSWFHLLSASYDGKVMLWDLRTAWPLSVIESHSDKV 406
Query: 505 MCADWWKDDCVVSGGQD 455
+ ADWWK + V+SGG D
Sbjct: 407 LSADWWKSNSVISGGAD 423
Score = 105 bits (261), Expect = 5e-20
Identities = 54/78 (69%), Positives = 65/78 (83%)
Frame = -2
Query: 1778 SRQVQVRFVTKLQSPMKVLPTAIAIPSNLTRMGLSTIVNNLLKAGDSDWEPFPFDFLIDG 1599
+R++QVRFVTKL P KV TAIAIP++L R GLS++VN LL++ D+D + PFDFLIDG
Sbjct: 12 ARRIQVRFVTKLGEPYKVPTTAIAIPADLARFGLSSLVNALLQSNDADHQLEPFDFLIDG 71
Query: 1598 ELVRMSLEQFLLAKGISA 1545
E VRMSLEQFLLAKGISA
Sbjct: 72 EFVRMSLEQFLLAKGISA 89