BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00004956
         (2124 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002273814.1| PREDICTED: DNA repair and recombination prot...   464   e-128
ref|XP_002275596.1| PREDICTED: DNA repair and recombination prot...   461   e-127
ref|XP_004170971.1| PREDICTED: SWI/SNF-related matrix-associated...   458   e-126
ref|XP_004150074.1| PREDICTED: SWI/SNF-related matrix-associated...   458   e-126
ref|XP_002884170.1| defective in RNA-directed DNA methylation 1 ...   417   e-114

>ref|XP_002273814.1| PREDICTED: DNA repair and recombination protein RAD54-like [Vitis
            vinifera]
          Length = 903

 Score =  464 bits (1193), Expect = e-128
 Identities = 269/588 (45%), Positives = 347/588 (59%), Gaps = 7/588 (1%)
 Frame = -1

Query: 1743 VHTESKYKRDKYLPDVIDYSDPFSVPNLNEELDRSIYGSVTKDIEDLRERRSQMLNPLLA 1564
            +H+E K KR K  P+V+DYSDPF++PNL E LD   +GSVTK+IE L  RR QML P   
Sbjct: 1    MHSEPKQKRQKAGPNVVDYSDPFAIPNLLEGLDAGRFGSVTKEIEALCARRMQMLQPYYV 60

Query: 1563 LYPKLASRRLDFSPPSNGKSKEVSHLISRPTXXXXXXXXXXXXDSPAVEDSKSVCKSSSE 1384
            +YP L+    D       + K+ S L++R              D   V+D          
Sbjct: 61   MYPSLSYMCTDLGKK---QGKKASKLVNREASHLAHEDVIDLEDDHVVDD---------- 107

Query: 1383 EMQGYGWNALSVNVCQESIGCMKLPNIDNNLQNHNNRQVVILDSDEEESAEQIGT----- 1219
                    AL+    +++     LP             VVI+DSD+E+  +Q  +     
Sbjct: 108  --------ALTATAVEDAT----LP-------------VVIIDSDDEDCGDQKVSHPPQE 142

Query: 1218 TQAPRYSLETLNFEVPQASQSQNPFNLDLDRGKGLAVLDANQTASTHYRAVLLKKPIDES 1039
            T  P +S + +    P                     L AN      Y   +  K ++E 
Sbjct: 143  TAWPSFSYQEVVLRKPSVG------------------LLANNPVVRDYVGSIAPK-VEEG 183

Query: 1038 PIKDSAGLDGGERKIVKEESKALNAETESKKDKGVYVGVQDD-DVNSKNSSQCDFDDGLG 862
             +  +  +   +   +    K+L A  E KK +G YVGV+DD + N  N      DDGL 
Sbjct: 184  SLMGATEIRKDKDVYIGVGEKSLVANLEMKKVQGEYVGVEDDMETNEGNLRAKTEDDGLA 243

Query: 861  DIWREMTVALECNKDAPGDVXXXXXXXXXECDHTYILKDDLGYVCRVCGVIKKSIETIFD 682
            D+W+E  +AL+ +KD   D          EC+H+++LKDD+G VCR+CGV+ KSIETI +
Sbjct: 244  DMWQEFDLALQSSKDVAVDPGEDEKESKEECEHSFVLKDDIGSVCRICGVVNKSIETIIE 303

Query: 681  YQWVKGSKTTRTYMPESRSMKEREESDAPPLSGVNGSHDLAAVDISLHPRHMKQMKEHQL 502
            YQ+ K  K +RTYM E R+ K+RE +D P        H+L   +I  HPRH  QMK HQ+
Sbjct: 304  YQYTK-VKRSRTYMYEPRNTKDREPTDDPSDGLGFSEHNLTVTEIHAHPRHSMQMKPHQV 362

Query: 501  EGFNFLVRNLICDDPGGCILAHAPGSGKTFMIISFIQSFLAKLPHARPLVVLPKGILGTW 322
            EGFNFLV NL+ ++PGGCILAHAPGSGKTFMIISF+QSFLAK P ARPLVVLPKGIL TW
Sbjct: 363  EGFNFLVSNLVAENPGGCILAHAPGSGKTFMIISFMQSFLAKYPQARPLVVLPKGILATW 422

Query: 321  KREFIRWQIEDMPLYDFYSAKAESRKDQLDILKEWVENKGILFLGYKQFANIVCKSESND 142
            K+EF+ WQ+ED+PLYDFYS KA+SR  QL++LK+WV  K ILFLGYKQF++IVC   ++ 
Sbjct: 423  KKEFLTWQVEDIPLYDFYSVKADSRPQQLEVLKQWVAEKSILFLGYKQFSSIVCGDGASK 482

Query: 141  AA-ACQEILLKVPTILILDEGHTPRNEATDILHSLEKVQTPRKVVLSG 1
            A  ACQEILLK P ILILDEGHTPRNE TD+L+SL KVQTPRKVVLSG
Sbjct: 483  ATIACQEILLKAPQILILDEGHTPRNENTDVLYSLAKVQTPRKVVLSG 530


>ref|XP_002275596.1| PREDICTED: DNA repair and recombination protein RAD54-like [Vitis
            vinifera]
          Length = 944

 Score =  461 bits (1186), Expect = e-127
 Identities = 275/604 (45%), Positives = 349/604 (57%), Gaps = 8/604 (1%)
 Frame = -1

Query: 1788 YSDGKDTSSIPWLNGVHTESKYKRDKYLPDVIDYSDPFSVPNLNEELDRSIYGSVTKDIE 1609
            Y+  KD     +   +H+E K KR K   +V+DYSDPF++PNL E LD   +GS+TK+IE
Sbjct: 26   YNSTKDKRIRTFDENMHSEPKQKRQKAGSNVVDYSDPFAIPNLLEGLDAGKFGSMTKEIE 85

Query: 1608 DLRERRSQMLNPLLALYPKLASRRLDFSPPSNGKSKEVSHLISRPTXXXXXXXXXXXXDS 1429
             L  RR QML+P   +YP L+    D        SK+ S L++R              D 
Sbjct: 86   ALCARRMQMLHPYYVMYPSLSYMSTDLGKQP---SKKASKLVNRHASHLGHEDVIDLEDD 142

Query: 1428 PAVEDSKSVCKSSSEEMQGYGWNALSVNVCQESIGCMKLPNIDNNLQNHNNRQVVILDSD 1249
              V D  +                        ++    LP             VVI+DSD
Sbjct: 143  HIVYDVPTAT----------------------AVADAALP-------------VVIIDSD 167

Query: 1248 EEESAEQIGTTQA-----PRYSLETLNFEVPQASQ-SQNPFNLDLDRGKGLAVLDANQTA 1087
            +EES +Q  +        P +S + +    P     + NP   D          + + TA
Sbjct: 168  DEESGDQKVSHPPQEVAWPSFSYQEVILRKPSVGLLANNPVVRDYVESIAPKKEERSLTA 227

Query: 1086 STHYRAVLLKKPIDESPIKDSAGLDGGERKIVKEESKALNAETESKKDKGVYVGVQDDDV 907
            S+  R             KD  GL       +    ++L A  E K  KG YVGV+DD  
Sbjct: 228  SSEIR-------------KDKGGL------YIAVGERSLAANHEMKNVKGEYVGVEDDME 268

Query: 906  NSKNSSQCDF-DDGLGDIWREMTVALECNKDAPGDVXXXXXXXXXECDHTYILKDDLGYV 730
             S+ + Q    DD L D+W+E  +AL+ +KD   D          EC+H+++LKDD+G V
Sbjct: 269  ASEGNLQAKTKDDDLADMWQEFDLALQSSKDVAVDPEEDGKEGEEECEHSFVLKDDIGSV 328

Query: 729  CRVCGVIKKSIETIFDYQWVKGSKTTRTYMPESRSMKEREESDAPPLSGVNGSHDLAAVD 550
            CR+CGV+ KSIETI +YQ+ K  K +RTYM E R+ K+RE +D P        H L   +
Sbjct: 329  CRICGVVNKSIETIIEYQYSK-VKRSRTYMYEPRNTKDREPTDDPSDGLRFSEHSLIVTE 387

Query: 549  ISLHPRHMKQMKEHQLEGFNFLVRNLICDDPGGCILAHAPGSGKTFMIISFIQSFLAKLP 370
            I  HPRH  QMK HQ+EGFNFLV NL+ D+PGGCILAHAPGSGKTFMIISF+QSFLAK P
Sbjct: 388  IHAHPRHSMQMKPHQVEGFNFLVSNLVADNPGGCILAHAPGSGKTFMIISFMQSFLAKYP 447

Query: 369  HARPLVVLPKGILGTWKREFIRWQIEDMPLYDFYSAKAESRKDQLDILKEWVENKGILFL 190
             ARPLVVLPKGIL TWK+EF+ WQ+ED+PLYDFYS KA+SR  QL++LK+WV  K ILFL
Sbjct: 448  QARPLVVLPKGILATWKKEFLTWQVEDIPLYDFYSVKADSRPQQLEVLKQWVAEKSILFL 507

Query: 189  GYKQFANIVCKSESNDAA-ACQEILLKVPTILILDEGHTPRNEATDILHSLEKVQTPRKV 13
            GYKQF++IVC   ++ AA ACQEILLK P ILILDEGHTPRNE TD+L+SL KVQTPRKV
Sbjct: 508  GYKQFSSIVCGDGASKAAMACQEILLKAPQILILDEGHTPRNENTDVLYSLAKVQTPRKV 567

Query: 12   VLSG 1
            VLSG
Sbjct: 568  VLSG 571


>ref|XP_004170971.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
            regulator of chromatin subfamily A containing DEAD/H box
            1B-like [Cucumis sativus]
          Length = 903

 Score =  458 bits (1179), Expect = e-126
 Identities = 278/621 (44%), Positives = 360/621 (57%), Gaps = 10/621 (1%)
 Frame = -1

Query: 1833 STPELHPWRHKRMKIYSDGKDTSSIPWLNGVHTES-KYKRDKYLPDVIDYSDPFSVPNLN 1657
            +T  L+  +HKR+K+ SDGKD SS    +   + + +  +      VIDYSDPF+  NL 
Sbjct: 14   TTNGLYYGKHKRLKLSSDGKDLSSTATFSAKKSNTLRQNKMNNSAKVIDYSDPFATNNLI 73

Query: 1656 EELDRSIYGSVTKDIEDLRERRSQMLNPLLALYPKLASRRLDFSPPSNGKSKEVSHLISR 1477
            + LD   +GSVTK+I  L  R+ Q+L+P +A YP L+S   D      G+S+E    ++ 
Sbjct: 74   DGLDCGHFGSVTKEIGALVSRKMQVLSPYIAKYPALSSMLFDL-----GRSRECKEAMNN 128

Query: 1476 PTXXXXXXXXXXXXDSPAVEDSKSVCKSSSEEMQGYGWNALSVNVCQESIGCMKLPNIDN 1297
                          DS     S +V KS                         +LP    
Sbjct: 129  QASQLVHNLIDLEDDSAIDVRSNNVEKS-------------------------RLP---- 159

Query: 1296 NLQNHNNRQVVILDSDEEESAEQIGTTQAPRYSLETLNFEVPQASQSQNPFNLDLDRGKG 1117
                     ++I+DSDEE+S EQ                      +  +PF         
Sbjct: 160  ---------ILIIDSDEEDSKEQ----------------------RVIHPF--------- 179

Query: 1116 LAVLDANQTASTHYRAVLLKKPIDESPIKDSAGLDG----GERKIVKEESKALNAETESK 949
                          + V+L +P  +S  KD A +D       R    EE+  +       
Sbjct: 180  --------------QEVVLPRPPGQSLFKDIAIVDHRTSRDRRASNGEEATPIGESGTIN 225

Query: 948  KDKGVYVGVQDDDVNSKNSSQCDFDDGLGDIWREMTVALECNKDAPGDVXXXXXXXXXE- 772
            KDKGVY+GV++D+      +  + DDGLGDIW +M +ALEC+KD    V         E 
Sbjct: 226  KDKGVYIGVEEDEDEVSGQANSE-DDGLGDIWNDMQMALECSKDLDAAVDSSSNQPTTED 284

Query: 771  --CDHTYILKDDLGYVCRVCGVIKKSIETIFDYQWVKGSKTTRTYMPESRSMKEREESDA 598
              C+H+++LKDDLGYVCR+CGVI + IETIF++Q+ KG K+TRTY+ ESR+       D+
Sbjct: 285  VDCEHSFLLKDDLGYVCRICGVIDRGIETIFEFQYNKGKKSTRTYISESRN------KDS 338

Query: 597  PPLSGVNGSHD-LAAVDISLHPRHMKQMKEHQLEGFNFLVRNLICDDPGGCILAHAPGSG 421
              + GV  S D L   +IS HPRHMKQMK HQ+EGFNFL+ NL+ D+PGGCILAHAPGSG
Sbjct: 339  GNIVGVKISEDDLTVTEISAHPRHMKQMKPHQIEGFNFLISNLVSDNPGGCILAHAPGSG 398

Query: 420  KTFMIISFIQSFLAKLPHARPLVVLPKGILGTWKREFIRWQIEDMPLYDFYSAKAESRKD 241
            KTFMIISF+QSFLAK P ARPLVVLPKGIL TWK+EF  WQ+ED+PLYDFYS KA++R  
Sbjct: 399  KTFMIISFMQSFLAKYPQARPLVVLPKGILATWKKEFQIWQVEDIPLYDFYSVKADNRAQ 458

Query: 240  QLDILKEWVENKGILFLGYKQFANIVCKSESNDAA-ACQEILLKVPTILILDEGHTPRNE 64
            QL +L +WVE+K ILFLGYKQF+ IVC  E++ A+ ACQ ILL+VPTILILDEGHTPRNE
Sbjct: 459  QLTVLNQWVEHKSILFLGYKQFSTIVCDVETSAASTACQNILLQVPTILILDEGHTPRNE 518

Query: 63   ATDILHSLEKVQTPRKVVLSG 1
             TD L +L KV+TPRKVVLSG
Sbjct: 519  NTDTLQTLAKVRTPRKVVLSG 539


>ref|XP_004150074.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
            regulator of chromatin subfamily A containing DEAD/H box
            1B-like [Cucumis sativus]
          Length = 903

 Score =  458 bits (1179), Expect = e-126
 Identities = 278/621 (44%), Positives = 360/621 (57%), Gaps = 10/621 (1%)
 Frame = -1

Query: 1833 STPELHPWRHKRMKIYSDGKDTSSIPWLNGVHTES-KYKRDKYLPDVIDYSDPFSVPNLN 1657
            +T  L+  +HKR+K+ SDGKD SS    +   + + +  +      VIDYSDPF+  NL 
Sbjct: 14   TTNGLYYGKHKRLKLSSDGKDLSSTATFSAKKSNTLRQNKMNNSAKVIDYSDPFATNNLI 73

Query: 1656 EELDRSIYGSVTKDIEDLRERRSQMLNPLLALYPKLASRRLDFSPPSNGKSKEVSHLISR 1477
            + LD   +GSVTK+I  L  R+ Q+L+P +A YP L+S   D      G+S+E    ++ 
Sbjct: 74   DGLDCGHFGSVTKEIGALVSRKMQVLSPYIAKYPALSSMLFDL-----GRSRECKEAMNN 128

Query: 1476 PTXXXXXXXXXXXXDSPAVEDSKSVCKSSSEEMQGYGWNALSVNVCQESIGCMKLPNIDN 1297
                          DS     S +V KS                         +LP    
Sbjct: 129  QASQLVHNLIDLEDDSAIDVRSNNVEKS-------------------------RLP---- 159

Query: 1296 NLQNHNNRQVVILDSDEEESAEQIGTTQAPRYSLETLNFEVPQASQSQNPFNLDLDRGKG 1117
                     ++I+DSDEE+S EQ                      +  +PF         
Sbjct: 160  ---------ILIIDSDEEDSKEQ----------------------RVIHPF--------- 179

Query: 1116 LAVLDANQTASTHYRAVLLKKPIDESPIKDSAGLDG----GERKIVKEESKALNAETESK 949
                          + V+L +P  +S  KD A +D       R    EE+  +       
Sbjct: 180  --------------QEVVLPRPPGQSLFKDIAIVDHRTSQDRRASNGEEATPIGESGTIN 225

Query: 948  KDKGVYVGVQDDDVNSKNSSQCDFDDGLGDIWREMTVALECNKDAPGDVXXXXXXXXXE- 772
            KDKGVY+GV++D+      +  + DDGLGDIW +M +ALEC+KD    V         E 
Sbjct: 226  KDKGVYIGVEEDEDEVSGQANSE-DDGLGDIWNDMQMALECSKDLDAAVDSSSNQPTTED 284

Query: 771  --CDHTYILKDDLGYVCRVCGVIKKSIETIFDYQWVKGSKTTRTYMPESRSMKEREESDA 598
              C+H+++LKDDLGYVCR+CGVI + IETIF++Q+ KG K+TRTY+ ESR+       D+
Sbjct: 285  VDCEHSFLLKDDLGYVCRICGVIDRGIETIFEFQYNKGKKSTRTYISESRN------KDS 338

Query: 597  PPLSGVNGSHD-LAAVDISLHPRHMKQMKEHQLEGFNFLVRNLICDDPGGCILAHAPGSG 421
              + GV  S D L   +IS HPRHMKQMK HQ+EGFNFL+ NL+ D+PGGCILAHAPGSG
Sbjct: 339  GNIVGVKISEDDLTVTEISAHPRHMKQMKPHQIEGFNFLISNLVSDNPGGCILAHAPGSG 398

Query: 420  KTFMIISFIQSFLAKLPHARPLVVLPKGILGTWKREFIRWQIEDMPLYDFYSAKAESRKD 241
            KTFMIISF+QSFLAK P ARPLVVLPKGIL TWK+EF  WQ+ED+PLYDFYS KA++R  
Sbjct: 399  KTFMIISFMQSFLAKYPQARPLVVLPKGILATWKKEFQIWQVEDIPLYDFYSVKADNRAQ 458

Query: 240  QLDILKEWVENKGILFLGYKQFANIVCKSESNDAA-ACQEILLKVPTILILDEGHTPRNE 64
            QL +L +WVE+K ILFLGYKQF+ IVC  E++ A+ ACQ ILL+VPTILILDEGHTPRNE
Sbjct: 459  QLTVLNQWVEHKSILFLGYKQFSTIVCDVETSAASTACQNILLQVPTILILDEGHTPRNE 518

Query: 63   ATDILHSLEKVQTPRKVVLSG 1
             TD L +L KV+TPRKVVLSG
Sbjct: 519  NTDTLQTLAKVRTPRKVVLSG 539


>ref|XP_002884170.1| defective in RNA-directed DNA methylation 1 [Arabidopsis lyrata
            subsp. lyrata] gi|297330010|gb|EFH60429.1| defective in
            RNA-directed DNA methylation 1 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 815

 Score =  417 bits (1073), Expect = e-114
 Identities = 246/595 (41%), Positives = 347/595 (58%), Gaps = 12/595 (2%)
 Frame = -1

Query: 1749 NGVHTESKYKRDKYLPDVIDYSDPFSVPNLNEELDRSIYGSVTKDIEDLRERRSQMLNPL 1570
            +G+ ++S+ KR K    VIDYS+PF++ N+ E LD   +GSVTK+++++ + R  ++   
Sbjct: 79   DGLCSDSEAKRLKSSSKVIDYSNPFAISNMLEALDGGKFGSVTKELQEIADMRMDLIKRC 138

Query: 1569 LALYPKLASRRLDFSPPSNGKSKEVSHLISRPTXXXXXXXXXXXXDSPAVEDSKSVCKSS 1390
            + LYP LA                                          ED K++    
Sbjct: 139  IWLYPSLAYTEF--------------------------------------EDEKTMLSLD 160

Query: 1389 SEEM-QGYGWNALSVNVCQESIGCMKLPNIDNNLQNHNNR--------QVVILDSDEEES 1237
            ++++ +G               G + L + D++  + +N+        ++V+LDSD+E++
Sbjct: 161  NQQVVEG---------------GVINLDDDDDDDDDVSNKAICVVPSSEIVVLDSDDEDN 205

Query: 1236 AEQIGTTQ--APRYSLETLNFEVPQASQSQNPFNLDLDRGKGLAVLDANQTASTHYRAVL 1063
              Q  T Q  +    L+    +V   +       +DL R K +                +
Sbjct: 206  ERQRSTYQFQSTLVQLQKNQGDVTPVTPQFTFEEVDLGRSKEMM-------------PSV 252

Query: 1062 LKKPIDESPIKDSAGLDGGERKIVKEESKALNAETESKKDKGVYVGVQDDDVNSKNSSQC 883
            +K  ++    +D         K++  E+   N       +KGVYVGV+DDD+++++ +  
Sbjct: 253  IKAIVEGQTSRD---------KVIAIENGVAN-------EKGVYVGVEDDDIDNESEAA- 295

Query: 882  DFDDGLGDIWREMTVALECNKDAPGDVXXXXXXXXXE-CDHTYILKDDLGYVCRVCGVIK 706
              D+ LG+IW EM +++EC+KD   +          E C+H++ILKDD+GYVCRVCGVI+
Sbjct: 296  --DEDLGNIWNEMAMSIECSKDIAWETSHKQKADVVEDCEHSFILKDDMGYVCRVCGVIE 353

Query: 705  KSIETIFDYQWVKGSKTTRTYMPESRSMKEREESDAPPLSGVNGSHDLAAVDISLHPRHM 526
            KSI  I D Q+ K  + TRTY  E+R+ K   ESDA       G   L    ++ HP H 
Sbjct: 354  KSILEIIDVQFTKAKRNTRTYASETRN-KRFGESDAELKFSEEG---LMIGGLAAHPTHA 409

Query: 525  KQMKEHQLEGFNFLVRNLICDDPGGCILAHAPGSGKTFMIISFIQSFLAKLPHARPLVVL 346
             +MK HQ+EGF FL  NL+ DDPGGCI+AHAPGSGKTFMIISF+QSFLAK P A+PLVVL
Sbjct: 410  DKMKPHQIEGFQFLCSNLVADDPGGCIMAHAPGSGKTFMIISFMQSFLAKYPQAKPLVVL 469

Query: 345  PKGILGTWKREFIRWQIEDMPLYDFYSAKAESRKDQLDILKEWVENKGILFLGYKQFANI 166
            PKGIL TWK+EF+RWQ+ED+PL DFYSA+AE+R  QL IL++W+E K ILFLGYKQF+ I
Sbjct: 470  PKGILSTWKKEFLRWQVEDIPLLDFYSARAENRAQQLAILRKWMEKKSILFLGYKQFSTI 529

Query: 165  VCKSESNDAAACQEILLKVPTILILDEGHTPRNEATDILHSLEKVQTPRKVVLSG 1
            VC   S D+ +CQEILLKVP+ILILDEGHTPRNE T++L SL +VQTPRKVVLSG
Sbjct: 530  VCDDTSTDSLSCQEILLKVPSILILDEGHTPRNEDTNVLQSLAQVQTPRKVVLSG 584